Strain Fitness in Sphingobium sp. HT1-2 around GFF2743

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,768,463	+		GFF2741	0.87	+0.1
2,768,465	+		GFF2741	0.87	+0.8
2,768,465	+		GFF2741	0.87	+0.3
2,768,471	-		GFF2741	0.89	-0.4
2,768,481	-				-0.1
2,768,508	-				-2.6
2,768,529	-				-0.4
2,768,538	-				-1.5
2,768,553	+				-0.2
2,768,561	-				+1.2
2,768,565	+				+0.1
2,768,566	-				-0.1
2,768,570	+				-0.2
2,768,570	+				-0.5
2,768,578	-				-0.6
2,768,578	-				-0.8
2,768,578	-				+0.5
2,768,578	-				+0.9
2,768,578	-				-1.4
2,768,578	-				+1.6
2,768,584	-				-1.5
2,768,596	+				-0.1
2,768,611	-				+0.6
2,768,706	+				-0.0
2,768,706	+				-1.6
2,768,706	+				-0.3
2,768,706	+				-0.3
2,768,714	-				-0.4
2,768,714	-				-2.5
2,768,714	-				-1.0
2,768,714	-				-1.8
2,768,714	-				-1.2
2,768,714	-				+0.7
2,768,714	-				-1.2
2,768,714	-				-0.4
2,768,729	+				+0.7
2,768,737	-				-0.2
2,768,778	-				-0.1
2,768,803	-				-0.2
2,768,803	-				+0.1
2,768,805	+				-0.5
2,768,805	+				-0.4
2,768,805	+				-0.2
2,768,813	-				-0.7
2,768,813	-				-0.4
2,768,829	+				+0.1
2,768,829	+				-0.8
2,768,857	+				-1.7
2,768,872	+		GFF2742	0.10	+0.3
2,768,872	+		GFF2742	0.10	+0.2
2,768,872	+		GFF2742	0.10	+0.1
2,768,904	+		GFF2742	0.16	+0.1
2,768,928	+		GFF2742	0.21	-1.4
2,768,929	+		GFF2742	0.21	-1.4
2,768,929	+		GFF2742	0.21	-0.3
2,768,929	+		GFF2742	0.21	+1.2
2,768,932	-		GFF2742	0.22	+0.3
2,768,977	+		GFF2742	0.31	+0.4
2,768,981	+		GFF2742	0.32	-0.9
2,768,985	-		GFF2742	0.33	-0.9
2,768,993	-		GFF2742	0.34	+0.4
2,769,063	+		GFF2742	0.48	-0.7
2,769,071	-		GFF2742	0.50	-1.2
2,769,108	+		GFF2742	0.57	+0.9
2,769,116	-		GFF2742	0.59	-0.1
2,769,121	-		GFF2742	0.60	+1.6
2,769,158	-		GFF2742	0.67	-0.2
2,769,158	-		GFF2742	0.67	+0.0
2,769,169	-		GFF2742	0.69	-0.9
2,769,169	-		GFF2742	0.69	+0.8
2,769,177	-		GFF2742	0.71	+0.5
2,769,194	+		GFF2742	0.74	-0.1
2,769,201	+		GFF2742	0.76	+0.4
2,769,201	+		GFF2742	0.76	+0.4
2,769,201	+		GFF2742	0.76	+0.9
2,769,202	-		GFF2742	0.76	+0.0
2,769,204	-		GFF2742	0.76	-1.5
2,769,206	+		GFF2742	0.77	-1.5
2,769,209	-		GFF2742	0.77	-0.2
2,769,209	-		GFF2742	0.77	-0.1
2,769,209	-		GFF2742	0.77	-1.7
2,769,209	-		GFF2742	0.77	+0.0
2,769,209	-		GFF2742	0.77	-2.3
2,769,211	+		GFF2742	0.78	-2.2
2,769,220	-		GFF2742	0.79	-1.2
2,769,245	-		GFF2742	0.84	-1.2
2,769,260	+		GFF2742	0.87	-1.9
2,769,273	+				+0.2
2,769,278	-				-1.2
2,769,278	-				+0.2
2,769,278	-				+0.1
2,769,281	+				-0.5
2,769,281	-				-1.5
2,769,314	-				+0.2
2,769,317	+				-0.0
2,769,332	+				+1.0
2,769,356	-				-0.9
2,769,367	+				+1.0
2,769,367	+				-2.2
2,769,367	+				-0.2
2,769,393	+				-1.3
2,769,393	+				+0.9
2,769,401	-				-2.6
2,769,401	-				-0.2
2,769,434	-				+0.5
2,769,445	+				-0.7
2,769,453	-				-0.7
2,769,461	-				-0.6
2,769,467	+				+1.2
2,769,470	-				-1.1
2,769,475	-				-0.1
2,769,475	-				+0.2
2,769,488	+				+0.2
2,769,501	-		GFF2743	0.14	-0.4
2,769,504	+		GFF2743	0.15	-2.2
2,769,509	+		GFF2743	0.17	+0.1
2,769,516	+		GFF2743	0.19	-0.3
2,769,535	+		GFF2743	0.26	+0.8
2,769,542	-		GFF2743	0.28	+0.4
2,769,552	-		GFF2743	0.32	-1.8
2,769,552	-		GFF2743	0.32	-0.9
2,769,563	+		GFF2743	0.35	-1.2
2,769,568	+		GFF2743	0.37	+0.9
2,769,571	-		GFF2743	0.38	-0.9
2,769,571	-		GFF2743	0.38	+0.4
2,769,576	-		GFF2743	0.40	+0.6
2,769,597	-		GFF2743	0.47	+0.9
2,769,597	-		GFF2743	0.47	-1.5
2,769,597	-		GFF2743	0.47	-0.1
2,769,602	-		GFF2743	0.49	+0.2
2,769,602	-		GFF2743	0.49	+0.7
2,769,630	-		GFF2743	0.58	-0.5
2,769,630	-		GFF2743	0.58	-0.6
2,769,672	+		GFF2743	0.73	-0.2
2,769,672	+		GFF2743	0.73	-0.4
2,769,680	-		GFF2743	0.76	+0.4
2,769,699	-		GFF2743	0.82	-0.3
2,769,723	+				-2.5
2,769,744	+				-2.6
2,769,769	-				-1.9
2,769,769	-				-0.5
2,769,879	-				-1.8
2,769,882	+				-0.8
2,769,882	+				+0.6
2,769,887	-				+1.1
2,769,892	+				+0.3
2,769,927	-				-0.6
2,769,945	-		GFF2744	0.12	-0.9
2,769,950	+		GFF2744	0.13	-0.6
2,769,950	+		GFF2744	0.13	-0.1
2,769,951	+		GFF2744	0.13	+1.6
2,769,960	+		GFF2744	0.15	-0.7
2,769,968	-		GFF2744	0.17	-0.9
2,769,976	+		GFF2744	0.18	-1.1
2,769,976	-		GFF2744	0.18	-0.4
2,769,993	+		GFF2744	0.22	-0.8
2,769,997	+		GFF2744	0.22	-0.6
2,769,999	+		GFF2744	0.23	+1.2
2,770,004	+		GFF2744	0.24	-1.5
2,770,004	+		GFF2744	0.24	+0.6
2,770,009	+		GFF2744	0.25	-1.9
2,770,012	-		GFF2744	0.26	+1.5
2,770,012	-		GFF2744	0.26	-0.7
2,770,012	-		GFF2744	0.26	-1.9
2,770,014	+		GFF2744	0.26	-0.5
2,770,026	+		GFF2744	0.28	-0.4
2,770,042	+		GFF2744	0.32	+0.2
2,770,042	+		GFF2744	0.32	+0.3
2,770,042	+		GFF2744	0.32	-0.9
2,770,057	+		GFF2744	0.35	-0.4
2,770,063	+		GFF2744	0.36	-1.5
2,770,068	+		GFF2744	0.37	-1.1
2,770,076	+		GFF2744	0.38	+0.2
2,770,077	+		GFF2744	0.39	+0.2
2,770,078	+		GFF2744	0.39	-0.5
2,770,078	+		GFF2744	0.39	-0.4
2,770,083	+		GFF2744	0.40	-0.3
2,770,086	-		GFF2744	0.40	-0.0
2,770,086	-		GFF2744	0.40	-0.9
2,770,086	-		GFF2744	0.40	+1.0
2,770,092	+		GFF2744	0.42	-1.0
2,770,094	+		GFF2744	0.42	+0.2
2,770,095	+		GFF2744	0.42	-1.3
2,770,105	-		GFF2744	0.44	-1.2
2,770,120	+		GFF2744	0.47	+1.1
2,770,120	-		GFF2744	0.47	+0.9
2,770,124	+		GFF2744	0.48	-1.9
2,770,155	+		GFF2744	0.54	-0.6
2,770,163	-		GFF2744	0.56	+0.7
2,770,163	-		GFF2744	0.56	+0.8
2,770,191	+		GFF2744	0.61	+0.2
2,770,191	+		GFF2744	0.61	-0.0
2,770,193	+		GFF2744	0.62	-1.4
2,770,198	+		GFF2744	0.63	-0.4
2,770,198	+		GFF2744	0.63	-0.5
2,770,198	+		GFF2744	0.63	-0.6
2,770,198	+		GFF2744	0.63	+0.9
2,770,198	+		GFF2744	0.63	+0.6
2,770,198	+		GFF2744	0.63	+0.3
2,770,199	-		GFF2744	0.63	-0.5
2,770,199	-		GFF2744	0.63	-1.1
2,770,206	-		GFF2744	0.64	+0.7
2,770,206	-		GFF2744	0.64	-0.2
2,770,206	-		GFF2744	0.64	+0.3
2,770,206	-		GFF2744	0.64	+0.7
2,770,206	-		GFF2744	0.64	-0.4
2,770,214	-		GFF2744	0.66	-3.0
2,770,216	-		GFF2744	0.66	-2.2
2,770,216	-		GFF2744	0.66	-0.9
2,770,222	-		GFF2744	0.68	+0.2
2,770,222	-		GFF2744	0.68	+1.6
2,770,241	-		GFF2744	0.71	+0.1
2,770,288	+		GFF2744	0.81	-1.1
2,770,288	+		GFF2744	0.81	-1.2
2,770,289	-		GFF2744	0.81	-0.6
2,770,296	-		GFF2744	0.83	+0.7
2,770,296	-		GFF2744	0.83	-1.8
2,770,296	-		GFF2744	0.83	+1.1
2,770,301	-		GFF2744	0.84	-1.4
2,770,302	+		GFF2744	0.84	-1.1
2,770,313	+		GFF2744	0.86	+0.4
2,770,313	+		GFF2744	0.86	-0.2
2,770,321	-		GFF2744	0.88	+0.0
2,770,321	-		GFF2744	0.88	-0.7
2,770,326	-		GFF2744	0.89	+0.2
2,770,357	-				-0.4
2,770,365	-				-0.3
2,770,371	-				-0.4
2,770,407	+				-1.5
2,770,407	+				-1.2
2,770,407	+				+0.3
2,770,415	-				-0.7
2,770,415	-				-0.5
2,770,415	-				+0.0
2,770,432	+				-0.2
2,770,437	+				-1.2
2,770,445	-				-0.5
2,770,445	-				-1.1
2,770,447	+				-0.2
2,770,447	+				+0.9
2,770,447	+				-0.7
2,770,447	+				+0.1
2,770,447	+				-0.2
2,770,447	+				-2.0
2,770,465	-				+0.2
2,770,465	-				-1.9
2,770,465	-				-0.3
2,770,465	-				-0.6
2,770,507	+		GFF2745	0.14	+0.4
2,770,507	+		GFF2745	0.14	-0.2
2,770,515	-		GFF2745	0.15	+0.9
2,770,528	-		GFF2745	0.17	-0.9
2,770,542	+		GFF2745	0.19	-0.4
2,770,560	+		GFF2745	0.21	-0.1
2,770,560	+		GFF2745	0.21	+1.4
2,770,577	+		GFF2745	0.23	-0.8
2,770,577	+		GFF2745	0.23	-0.6
2,770,577	+		GFF2745	0.23	+1.4
2,770,577	+		GFF2745	0.23	-0.9
2,770,577	+		GFF2745	0.23	+0.3
2,770,577	+		GFF2745	0.23	-2.2
2,770,585	-		GFF2745	0.24	-1.3
2,770,585	-		GFF2745	0.24	-2.2
2,770,585	-		GFF2745	0.24	-1.3
2,770,585	-		GFF2745	0.24	+0.5
2,770,585	-		GFF2745	0.24	-1.0
2,770,601	+		GFF2745	0.26	-2.1
2,770,601	+		GFF2745	0.26	-0.9
2,770,601	+		GFF2745	0.26	+0.7
2,770,601	+		GFF2745	0.26	+0.0
2,770,613	+		GFF2745	0.28	-1.0
2,770,613	+		GFF2745	0.28	-0.8
2,770,613	+		GFF2745	0.28	+0.9
2,770,614	+		GFF2745	0.28	-1.6
2,770,614	+		GFF2745	0.28	+0.1
2,770,617	-		GFF2745	0.29	-0.1
2,770,619	+		GFF2745	0.29	-0.0
2,770,621	-		GFF2745	0.29	+0.7
2,770,638	+		GFF2745	0.31	-0.9
2,770,646	-		GFF2745	0.33	-1.1
2,770,646	-		GFF2745	0.33	+0.2
2,770,658	+		GFF2745	0.34	+0.3
2,770,658	+		GFF2745	0.34	-0.2
2,770,666	-		GFF2745	0.35	-1.6
2,770,666	-		GFF2745	0.35	+1.4
2,770,666	-		GFF2745	0.35	-1.3
2,770,666	-		GFF2745	0.35	+0.9
2,770,679	+		GFF2745	0.37	-0.5
2,770,701	-		GFF2745	0.40	+1.6
2,770,701	-		GFF2745	0.40	+1.2
2,770,711	-		GFF2745	0.41	-2.7
2,770,733	-		GFF2745	0.44	+1.2