Strain Fitness in Sphingobium sp. HT1-2 around GFF2740

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,765,766	-		GFF2738	0.59	+0.4
2,765,814	-		GFF2738	0.64	+1.0
2,766,046	-		GFF2738	0.89	-0.8
2,766,088	-				-0.2
2,766,110	-				-0.5
2,766,130	+				+0.1
2,766,138	-				-1.2
2,766,138	-				-0.5
2,766,138	-				+1.0
2,766,179	+				-0.4
2,766,189	+				-1.4
2,766,197	-				-2.1
2,766,201	+				-0.2
2,766,209	-				-0.4
2,766,209	-				-0.1
2,766,209	-				-0.3
2,766,212	+				+0.8
2,766,220	-				+1.2
2,766,291	-				+0.5
2,766,296	-				+0.2
2,766,334	+				-1.0
2,766,334	+				+0.6
2,766,342	-				+0.2
2,766,342	-				-0.1
2,766,342	-				-0.4
2,766,399	-		GFF2739	0.18	-2.1
2,766,420	-		GFF2739	0.23	-1.4
2,766,420	-		GFF2739	0.23	-0.8
2,766,458	+		GFF2739	0.33	+0.3
2,766,471	-		GFF2739	0.36	+0.4
2,766,516	-		GFF2739	0.47	+0.6
2,766,521	+		GFF2739	0.48	-1.8
2,766,529	-		GFF2739	0.50	+1.2
2,766,546	-		GFF2739	0.54	+0.1
2,766,556	-		GFF2739	0.56	-0.3
2,766,590	+		GFF2739	0.64	+0.6
2,766,604	-		GFF2739	0.68	-0.8
2,766,615	+		GFF2739	0.71	-0.4
2,766,615	+		GFF2739	0.71	+0.6
2,766,623	-		GFF2739	0.72	+0.3
2,766,623	-		GFF2739	0.72	+0.1
2,766,623	-		GFF2739	0.72	+0.6
2,766,661	+		GFF2739	0.82	-2.0
2,766,686	-		GFF2739	0.88	+0.0
2,766,713	+				+1.2
2,766,715	+				+0.5
2,766,715	+				-1.1
2,766,772	+				+0.4
2,766,774	-				-1.9
2,766,780	-				+0.3
2,766,782	-				-1.1
2,766,782	-				+0.6
2,766,782	-				-0.9
2,766,784	+				-0.1
2,766,789	+				+0.0
2,766,840	-				-0.3
2,766,872	+				-0.6
2,766,885	+		GFF2740	0.10	-0.9
2,766,905	+		GFF2740	0.12	-0.1
2,766,927	+		GFF2740	0.13	-1.0
2,766,927	+		GFF2740	0.13	-1.2
2,766,927	+		GFF2740	0.13	-0.9
2,766,932	+		GFF2740	0.14	+1.1
2,766,932	+		GFF2740	0.14	-0.9
2,766,932	+		GFF2740	0.14	-1.6
2,766,932	+		GFF2740	0.14	+0.1
2,766,935	-		GFF2740	0.14	+0.5
2,766,940	-		GFF2740	0.14	-2.7
2,766,941	+		GFF2740	0.14	-0.8
2,766,946	+		GFF2740	0.15	+0.6
2,766,954	-		GFF2740	0.15	-0.6
2,766,966	+		GFF2740	0.16	+0.1
2,767,005	-		GFF2740	0.19	+0.0
2,767,005	-		GFF2740	0.19	-0.4
2,767,017	+		GFF2740	0.20	-1.7
2,767,060	-		GFF2740	0.23	-2.4
2,767,061	-		GFF2740	0.24	+0.2
2,767,096	+		GFF2740	0.26	+0.4
2,767,104	-		GFF2740	0.27	+0.1
2,767,112	+		GFF2740	0.27	-0.1
2,767,118	+		GFF2740	0.28	-0.1
2,767,140	+		GFF2740	0.30	+0.5
2,767,147	-		GFF2740	0.30	-1.2
2,767,148	-		GFF2740	0.30	-1.1
2,767,179	+		GFF2740	0.33	+0.6
2,767,179	+		GFF2740	0.33	-0.4
2,767,184	+		GFF2740	0.33	-0.3
2,767,184	+		GFF2740	0.33	+0.3
2,767,184	+		GFF2740	0.33	-0.3
2,767,187	-		GFF2740	0.33	-0.2
2,767,189	+		GFF2740	0.33	-0.6
2,767,189	+		GFF2740	0.33	+0.0
2,767,189	+		GFF2740	0.33	-1.6
2,767,189	+		GFF2740	0.33	+0.1
2,767,189	+		GFF2740	0.33	-0.1
2,767,189	+		GFF2740	0.33	-1.2
2,767,189	+		GFF2740	0.33	+0.4
2,767,189	+		GFF2740	0.33	-3.6
2,767,189	+		GFF2740	0.33	-0.9
2,767,192	-		GFF2740	0.34	-3.6
2,767,197	-		GFF2740	0.34	-0.1
2,767,197	-		GFF2740	0.34	+0.7
2,767,197	-		GFF2740	0.34	-1.9
2,767,197	-		GFF2740	0.34	+0.7
2,767,197	-		GFF2740	0.34	-1.4
2,767,197	-		GFF2740	0.34	+0.6
2,767,197	-		GFF2740	0.34	+0.3
2,767,202	+		GFF2740	0.34	-0.6
2,767,202	+		GFF2740	0.34	+0.2
2,767,208	+		GFF2740	0.35	+0.2
2,767,210	-		GFF2740	0.35	+0.3
2,767,210	-		GFF2740	0.35	-0.1
2,767,210	-		GFF2740	0.35	+1.0
2,767,210	-		GFF2740	0.35	-1.0
2,767,210	-		GFF2740	0.35	-1.1
2,767,210	-		GFF2740	0.35	-0.1
2,767,210	-		GFF2740	0.35	+0.2
2,767,210	-		GFF2740	0.35	-1.2
2,767,210	-		GFF2740	0.35	+0.8
2,767,210	-		GFF2740	0.35	+0.4
2,767,220	-		GFF2740	0.36	+0.1
2,767,222	-		GFF2740	0.36	+0.2
2,767,250	+		GFF2740	0.38	+0.6
2,767,256	+		GFF2740	0.38	+0.3
2,767,258	-		GFF2740	0.39	-0.2
2,767,263	-		GFF2740	0.39	-2.0
2,767,264	-		GFF2740	0.39	+0.6
2,767,272	-		GFF2740	0.40	+0.3
2,767,281	+		GFF2740	0.40	-0.4
2,767,304	-		GFF2740	0.42	+0.8
2,767,306	+		GFF2740	0.42	-1.2
2,767,400	+		GFF2740	0.49	-1.7
2,767,403	-		GFF2740	0.50	+0.5
2,767,408	-		GFF2740	0.50	-0.4
2,767,408	-		GFF2740	0.50	-0.6
2,767,418	-		GFF2740	0.51	+0.9
2,767,418	-		GFF2740	0.51	-1.9
2,767,418	-		GFF2740	0.51	-1.3
2,767,443	-		GFF2740	0.53	-0.1
2,767,453	+		GFF2740	0.53	-0.1
2,767,463	+		GFF2740	0.54	-1.2
2,767,466	-		GFF2740	0.54	-0.4
2,767,477	+		GFF2740	0.55	-0.3
2,767,487	+		GFF2740	0.56	-1.9
2,767,511	+		GFF2740	0.58	+0.4
2,767,525	-		GFF2740	0.59	-0.3
2,767,527	-		GFF2740	0.59	-1.9
2,767,527	-		GFF2740	0.59	+1.7
2,767,527	-		GFF2740	0.59	-0.1
2,767,538	+		GFF2740	0.60	-0.0
2,767,538	-		GFF2740	0.60	-0.2
2,767,548	-		GFF2740	0.61	+1.0
2,767,554	-		GFF2740	0.61	+0.1
2,767,578	+		GFF2740	0.63	-0.2
2,767,578	+		GFF2740	0.63	+0.8
2,767,578	+		GFF2740	0.63	-0.4
2,767,578	+		GFF2740	0.63	-2.2
2,767,578	+		GFF2740	0.63	-0.4
2,767,586	-		GFF2740	0.64	+1.0
2,767,591	-		GFF2740	0.64	-1.5
2,767,597	+		GFF2740	0.64	-0.6
2,767,621	-		GFF2740	0.66	+0.2
2,767,622	-		GFF2740	0.66	-2.7
2,767,626	+		GFF2740	0.67	-1.1
2,767,636	-		GFF2740	0.67	-0.2
2,767,674	+		GFF2740	0.70	-0.4
2,767,691	-		GFF2740	0.72	+0.2
2,767,692	-		GFF2740	0.72	-0.1
2,767,702	-		GFF2740	0.72	+0.1
2,767,711	-		GFF2740	0.73	+0.9
2,767,711	-		GFF2740	0.73	+0.6
2,767,720	+		GFF2740	0.74	-2.2
2,767,741	+		GFF2740	0.75	-0.3
2,767,745	-		GFF2740	0.76	-0.4
2,767,750	-		GFF2740	0.76	-2.5
2,767,751	-		GFF2740	0.76	-0.4
2,767,754	-		GFF2740	0.76	+0.3
2,767,758	-		GFF2740	0.77	-0.1
2,767,792	+		GFF2740	0.79	-0.9
2,767,792	+		GFF2740	0.79	-0.1
2,767,792	+		GFF2740	0.79	-1.5
2,767,798	+		GFF2740	0.80	+1.2
2,767,800	-		GFF2740	0.80	-1.7
2,767,800	-		GFF2740	0.80	-1.7
2,767,806	-		GFF2740	0.80	+0.9
2,767,806	-		GFF2740	0.80	-0.1
2,767,812	-		GFF2740	0.81	-0.0
2,767,813	-		GFF2740	0.81	+0.3
2,767,835	-		GFF2740	0.83	+0.6
2,767,842	+		GFF2740	0.83	-0.5
2,767,842	+		GFF2740	0.83	-2.0
2,767,843	-		GFF2740	0.83	-1.0
2,767,844	+		GFF2740	0.83	-1.1
2,767,844	+		GFF2740	0.83	+0.3
2,767,844	+		GFF2740	0.83	+0.2
2,767,844	+		GFF2740	0.83	-0.9
2,767,844	+		GFF2740	0.83	-0.8
2,767,844	+		GFF2740	0.83	+0.1
2,767,844	+		GFF2740	0.83	+0.6
2,767,844	+		GFF2740	0.83	-2.1
2,767,850	-		GFF2740	0.84	+0.3
2,767,850	-		GFF2740	0.84	-1.5
2,767,850	-		GFF2740	0.84	-2.6
2,767,850	-		GFF2740	0.84	-1.1
2,767,850	-		GFF2740	0.84	+1.0
2,767,850	-		GFF2740	0.84	-0.4
2,767,850	-		GFF2740	0.84	-0.7
2,767,852	-		GFF2740	0.84	-1.8
2,767,852	-		GFF2740	0.84	+1.0
2,767,852	-		GFF2740	0.84	-0.7
2,767,852	-		GFF2740	0.84	+0.8
2,767,852	-		GFF2740	0.84	-0.5
2,767,852	-		GFF2740	0.84	-0.8
2,767,852	-		GFF2740	0.84	-0.7
2,767,852	-		GFF2740	0.84	+0.2
2,767,852	-		GFF2740	0.84	-0.4
2,767,852	-		GFF2740	0.84	-0.2
2,767,852	-		GFF2740	0.84	+0.2
2,767,852	-		GFF2740	0.84	-1.3
2,767,852	-		GFF2740	0.84	-1.5
2,767,852	-		GFF2740	0.84	+0.5
2,767,852	-		GFF2740	0.84	+0.3
2,767,852	-		GFF2740	0.84	-0.3
2,767,862	-		GFF2740	0.85	-0.6
2,767,876	+		GFF2740	0.86	-1.9
2,767,876	+		GFF2740	0.86	-2.6
2,767,876	+		GFF2740	0.86	-0.1
2,767,876	+		GFF2740	0.86	-0.2
2,767,876	+		GFF2740	0.86	-1.8
2,767,884	-		GFF2740	0.86	-1.4
2,767,886	+		GFF2740	0.86	+0.5
2,767,936	+				+0.6
2,767,938	-				+0.5
2,767,942	+				-1.9
2,767,947	+				+0.4
2,767,972	+				-0.6
2,767,972	+				-0.4
2,767,972	+				-0.3
2,767,973	+				+1.4
2,767,980	-				+0.6
2,767,995	-				+0.0
2,767,995	-				-1.4
2,767,995	-				+0.5
2,767,995	-				+0.2
2,767,995	-				+0.3
2,768,023	+				+0.4
2,768,028	+				-0.3
2,768,036	-				-0.8
2,768,036	-				+1.5
2,768,036	-				-0.0
2,768,036	-				-1.1
2,768,037	+				-0.6
2,768,037	+				-1.4
2,768,037	+				-1.2
2,768,042	+				-1.9
2,768,045	-				+0.2
2,768,045	-				-0.4
2,768,045	-				-1.5
2,768,045	-				+0.2
2,768,046	-				-0.3
2,768,047	+				-0.2
2,768,048	+				-0.2
2,768,049	+				+0.5
2,768,050	-				+0.2
2,768,055	-				-2.4
2,768,081	+				-1.8
2,768,094	-				-0.1
2,768,165	-		GFF2741	0.20	-0.8
2,768,188	+		GFF2741	0.25	-2.6
2,768,190	+		GFF2741	0.25	+0.7
2,768,190	+		GFF2741	0.25	-0.4
2,768,190	+		GFF2741	0.25	+0.1
2,768,190	+		GFF2741	0.25	-1.2
2,768,190	+		GFF2741	0.25	-1.2
2,768,190	+		GFF2741	0.25	-1.4
2,768,190	+		GFF2741	0.25	-0.5
2,768,198	-		GFF2741	0.27	-0.4
2,768,198	-		GFF2741	0.27	+0.5
2,768,198	-		GFF2741	0.27	+0.5
2,768,198	-		GFF2741	0.27	-0.5
2,768,198	-		GFF2741	0.27	-0.2
2,768,208	+		GFF2741	0.29	-0.1
2,768,208	+		GFF2741	0.29	+0.5
2,768,208	+		GFF2741	0.29	+1.9
2,768,208	+		GFF2741	0.29	-2.4
2,768,208	+		GFF2741	0.29	-1.2
2,768,208	-		GFF2741	0.29	+0.3
2,768,216	-		GFF2741	0.31	+0.6
2,768,216	-		GFF2741	0.31	+1.7
2,768,216	-		GFF2741	0.31	-1.0
2,768,216	-		GFF2741	0.31	+0.6
2,768,216	-		GFF2741	0.31	-2.0
2,768,218	+		GFF2741	0.32	+0.0
2,768,218	+		GFF2741	0.32	-1.6
2,768,226	-		GFF2741	0.33	-1.0
2,768,226	-		GFF2741	0.33	-0.7
2,768,268	+		GFF2741	0.43	+0.9
2,768,276	-		GFF2741	0.45	-0.5
2,768,276	-		GFF2741	0.45	-0.1
2,768,278	+		GFF2741	0.45	-1.8
2,768,278	+		GFF2741	0.45	-0.7
2,768,278	+		GFF2741	0.45	+0.1
2,768,278	+		GFF2741	0.45	+1.1
2,768,286	-		GFF2741	0.47	-0.4
2,768,286	-		GFF2741	0.47	+0.7
2,768,286	-		GFF2741	0.47	-1.4
2,768,286	-		GFF2741	0.47	-0.6
2,768,296	-		GFF2741	0.49	-0.9
2,768,296	-		GFF2741	0.49	-0.6
2,768,298	+		GFF2741	0.50	+0.9
2,768,322	-		GFF2741	0.55	-0.5
2,768,337	+		GFF2741	0.58	-0.2
2,768,345	-		GFF2741	0.60	-0.5
2,768,398	+		GFF2741	0.72	+0.2
2,768,404	-		GFF2741	0.73	+0.6
2,768,408	+		GFF2741	0.74	-0.8
2,768,413	+		GFF2741	0.75	+0.1
2,768,416	+		GFF2741	0.76	+2.1
2,768,455	+		GFF2741	0.85	-0.5
2,768,463	+		GFF2741	0.87	+0.1
2,768,465	+		GFF2741	0.87	+0.8
2,768,465	+		GFF2741	0.87	+0.3
2,768,471	-		GFF2741	0.89	-0.4
2,768,481	-				-0.1
2,768,508	-				-2.6
2,768,529	-				-0.4
2,768,538	-				-1.5
2,768,553	+				-0.2
2,768,561	-				+1.2
2,768,565	+				+0.1
2,768,566	-				-0.1
2,768,570	+				-0.2
2,768,570	+				-0.5
2,768,578	-				-0.6
2,768,578	-				-0.8
2,768,578	-				+0.5
2,768,578	-				+0.9
2,768,578	-				-1.4
2,768,578	-				+1.6
2,768,584	-				-1.5
2,768,596	+				-0.1
2,768,611	-				+0.6
2,768,706	+				-0.0
2,768,706	+				-1.6
2,768,706	+				-0.3
2,768,706	+				-0.3
2,768,714	-				-0.4
2,768,714	-				-2.5
2,768,714	-				-1.0
2,768,714	-				-1.8
2,768,714	-				-1.2
2,768,714	-				+0.7
2,768,714	-				-1.2
2,768,714	-				-0.4
2,768,729	+				+0.7
2,768,737	-				-0.2
2,768,778	-				-0.1
2,768,803	-				-0.2
2,768,803	-				+0.1
2,768,805	+				-0.5
2,768,805	+				-0.4
2,768,805	+				-0.2
2,768,813	-				-0.7
2,768,813	-				-0.4
2,768,829	+				+0.1
2,768,829	+				-0.8
2,768,857	+				-1.7
2,768,872	+		GFF2742	0.10	+0.3
2,768,872	+		GFF2742	0.10	+0.2
2,768,872	+		GFF2742	0.10	+0.1
2,768,904	+		GFF2742	0.16	+0.1
2,768,928	+		GFF2742	0.21	-1.4
2,768,929	+		GFF2742	0.21	-1.4
2,768,929	+		GFF2742	0.21	-0.3
2,768,929	+		GFF2742	0.21	+1.2
2,768,932	-		GFF2742	0.22	+0.3
2,768,977	+		GFF2742	0.31	+0.4
2,768,981	+		GFF2742	0.32	-0.9
2,768,985	-		GFF2742	0.33	-0.9
2,768,993	-		GFF2742	0.34	+0.4