Strain Fitness in Sphingobium sp. HT1-2 around GFF2738

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,764,239	-		GFF2737	0.31	-0.4
2,764,276	+		GFF2737	0.34	+0.7
2,764,290	-		GFF2737	0.35	-0.1
2,764,292	+		GFF2737	0.35	+0.3
2,764,292	+		GFF2737	0.35	+0.1
2,764,292	-		GFF2737	0.35	-0.5
2,764,292	-		GFF2737	0.35	+0.4
2,764,292	-		GFF2737	0.35	-0.2
2,764,297	+		GFF2737	0.35	+0.1
2,764,300	-		GFF2737	0.36	+0.4
2,764,300	-		GFF2737	0.36	+0.7
2,764,300	-		GFF2737	0.36	-1.7
2,764,305	-		GFF2737	0.36	+0.0
2,764,347	-		GFF2737	0.39	-0.9
2,764,352	-		GFF2737	0.39	+0.1
2,764,352	-		GFF2737	0.39	+1.2
2,764,363	-		GFF2737	0.40	+0.6
2,764,367	-		GFF2737	0.40	+0.3
2,764,461	-		GFF2737	0.47	+0.4
2,764,471	-		GFF2737	0.47	-1.9
2,764,503	-		GFF2737	0.50	-1.2
2,764,531	+		GFF2737	0.52	-1.2
2,764,531	+		GFF2737	0.52	-2.0
2,764,536	+		GFF2737	0.52	-1.3
2,764,555	+		GFF2737	0.53	-1.8
2,764,577	+		GFF2737	0.55	-1.5
2,764,617	-		GFF2737	0.58	-0.5
2,764,634	+		GFF2737	0.59	+0.3
2,764,644	-		GFF2737	0.59	-0.4
2,764,660	+		GFF2737	0.60	+0.5
2,764,660	+		GFF2737	0.60	+0.8
2,764,668	-		GFF2737	0.61	+1.5
2,764,710	+		GFF2737	0.64	+0.7
2,764,711	+		GFF2737	0.64	-1.2
2,764,718	-		GFF2737	0.65	+0.7
2,764,733	+		GFF2737	0.66	+0.0
2,764,734	-		GFF2737	0.66	-0.9
2,764,758	-		GFF2737	0.67	+0.1
2,764,812	+		GFF2737	0.71	-0.5
2,764,814	+		GFF2737	0.71	-1.1
2,764,819	-		GFF2737	0.72	+0.8
2,764,842	+		GFF2737	0.73	+1.2
2,764,850	-		GFF2737	0.74	+0.6
2,764,887	-		GFF2737	0.76	+1.2
2,764,921	-		GFF2737	0.79	-0.3
2,764,921	-		GFF2737	0.79	-1.4
2,764,921	-		GFF2737	0.79	+1.3
2,764,921	-		GFF2737	0.79	-0.9
2,764,923	+		GFF2737	0.79	+0.7
2,764,965	+		GFF2737	0.82	-0.6
2,764,973	-		GFF2737	0.82	+0.1
2,765,035	+		GFF2737	0.86	-0.8
2,765,035	+		GFF2737	0.86	-1.6
2,765,043	-		GFF2737	0.87	-1.9
2,765,043	-		GFF2737	0.87	-0.5
2,765,043	-		GFF2737	0.87	+1.7
2,765,096	-				-2.4
2,765,106	-				-0.1
2,765,134	-				+0.3
2,765,167	-				-2.5
2,765,203	-				+1.1
2,765,210	+				-1.8
2,765,213	-				-1.2
2,765,218	-				-1.8
2,765,224	+				-0.6
2,765,232	-				+0.9
2,765,232	-				-0.1
2,765,232	-				-0.4
2,765,232	-				+0.6
2,765,232	-				+0.5
2,765,232	-				-0.4
2,765,241	-				-1.9
2,765,260	-				+0.1
2,765,341	+		GFF2738	0.12	+0.4
2,765,349	-		GFF2738	0.13	+0.3
2,765,361	-		GFF2738	0.15	-1.8
2,765,389	+		GFF2738	0.18	+0.9
2,765,397	-		GFF2738	0.19	+1.1
2,765,433	+		GFF2738	0.22	-1.5
2,765,441	-		GFF2738	0.23	-0.5
2,765,443	+		GFF2738	0.24	-1.4
2,765,563	-		GFF2738	0.37	+1.0
2,765,577	+		GFF2738	0.38	+0.4
2,765,577	+		GFF2738	0.38	-1.6
2,765,585	-		GFF2738	0.39	+0.2
2,765,585	-		GFF2738	0.39	+0.2
2,765,585	-		GFF2738	0.39	+1.3
2,765,585	-		GFF2738	0.39	-1.2
2,765,585	-		GFF2738	0.39	-0.5
2,765,653	+		GFF2738	0.46	-0.4
2,765,653	+		GFF2738	0.46	-0.5
2,765,653	+		GFF2738	0.46	-0.4
2,765,653	+		GFF2738	0.46	+0.7
2,765,653	+		GFF2738	0.46	-1.2
2,765,653	+		GFF2738	0.46	-1.9
2,765,653	+		GFF2738	0.46	-0.9
2,765,653	+		GFF2738	0.46	-0.9
2,765,653	+		GFF2738	0.46	-1.3
2,765,655	+		GFF2738	0.47	+0.3
2,765,655	+		GFF2738	0.47	-3.0
2,765,661	-		GFF2738	0.47	-1.7
2,765,661	-		GFF2738	0.47	+0.2
2,765,661	-		GFF2738	0.47	+0.0
2,765,661	-		GFF2738	0.47	+0.6
2,765,661	-		GFF2738	0.47	-1.2
2,765,661	-		GFF2738	0.47	+0.5
2,765,661	-		GFF2738	0.47	-1.8
2,765,661	-		GFF2738	0.47	-0.4
2,765,661	-		GFF2738	0.47	-1.6
2,765,661	-		GFF2738	0.47	-1.6
2,765,661	-		GFF2738	0.47	+0.1
2,765,661	-		GFF2738	0.47	+0.7
2,765,661	-		GFF2738	0.47	+0.1
2,765,661	-		GFF2738	0.47	-0.5
2,765,661	-		GFF2738	0.47	+0.8
2,765,661	-		GFF2738	0.47	-1.6
2,765,661	-		GFF2738	0.47	-1.5
2,765,661	-		GFF2738	0.47	+1.5
2,765,661	-		GFF2738	0.47	-0.8
2,765,663	-		GFF2738	0.47	+0.3
2,765,663	-		GFF2738	0.47	-0.5
2,765,663	-		GFF2738	0.47	-0.5
2,765,703	+		GFF2738	0.52	-0.5
2,765,766	-		GFF2738	0.59	+0.4
2,765,814	-		GFF2738	0.64	+1.0
2,766,046	-		GFF2738	0.89	-0.8
2,766,088	-				-0.2
2,766,110	-				-0.5
2,766,130	+				+0.1
2,766,138	-				-1.2
2,766,138	-				-0.5
2,766,138	-				+1.0
2,766,179	+				-0.4
2,766,189	+				-1.4
2,766,197	-				-2.1
2,766,201	+				-0.2
2,766,209	-				-0.4
2,766,209	-				-0.1
2,766,209	-				-0.3
2,766,212	+				+0.8
2,766,220	-				+1.2
2,766,291	-				+0.5
2,766,296	-				+0.2
2,766,334	+				-1.0
2,766,334	+				+0.6
2,766,342	-				+0.2
2,766,342	-				-0.1
2,766,342	-				-0.4
2,766,399	-		GFF2739	0.18	-2.1
2,766,420	-		GFF2739	0.23	-1.4
2,766,420	-		GFF2739	0.23	-0.8
2,766,458	+		GFF2739	0.33	+0.3
2,766,471	-		GFF2739	0.36	+0.4
2,766,516	-		GFF2739	0.47	+0.6
2,766,521	+		GFF2739	0.48	-1.8
2,766,529	-		GFF2739	0.50	+1.2
2,766,546	-		GFF2739	0.54	+0.1
2,766,556	-		GFF2739	0.56	-0.3
2,766,590	+		GFF2739	0.64	+0.6
2,766,604	-		GFF2739	0.68	-0.8
2,766,615	+		GFF2739	0.71	-0.4
2,766,615	+		GFF2739	0.71	+0.6
2,766,623	-		GFF2739	0.72	+0.3
2,766,623	-		GFF2739	0.72	+0.1
2,766,623	-		GFF2739	0.72	+0.6
2,766,661	+		GFF2739	0.82	-2.0
2,766,686	-		GFF2739	0.88	+0.0
2,766,713	+				+1.2
2,766,715	+				+0.5
2,766,715	+				-1.1
2,766,772	+				+0.4
2,766,774	-				-1.9
2,766,780	-				+0.3
2,766,782	-				-1.1
2,766,782	-				+0.6
2,766,782	-				-0.9
2,766,784	+				-0.1
2,766,789	+				+0.0
2,766,840	-				-0.3
2,766,872	+				-0.6
2,766,885	+		GFF2740	0.10	-0.9
2,766,905	+		GFF2740	0.12	-0.1
2,766,927	+		GFF2740	0.13	-1.0
2,766,927	+		GFF2740	0.13	-1.2
2,766,927	+		GFF2740	0.13	-0.9
2,766,932	+		GFF2740	0.14	+1.1
2,766,932	+		GFF2740	0.14	-0.9
2,766,932	+		GFF2740	0.14	-1.6
2,766,932	+		GFF2740	0.14	+0.1
2,766,935	-		GFF2740	0.14	+0.5
2,766,940	-		GFF2740	0.14	-2.7
2,766,941	+		GFF2740	0.14	-0.8
2,766,946	+		GFF2740	0.15	+0.6
2,766,954	-		GFF2740	0.15	-0.6
2,766,966	+		GFF2740	0.16	+0.1
2,767,005	-		GFF2740	0.19	+0.0
2,767,005	-		GFF2740	0.19	-0.4
2,767,017	+		GFF2740	0.20	-1.7
2,767,060	-		GFF2740	0.23	-2.4
2,767,061	-		GFF2740	0.24	+0.2
2,767,096	+		GFF2740	0.26	+0.4
2,767,104	-		GFF2740	0.27	+0.1
2,767,112	+		GFF2740	0.27	-0.1
2,767,118	+		GFF2740	0.28	-0.1
2,767,140	+		GFF2740	0.30	+0.5