Strain Fitness in Sphingobium sp. HT1-2 around GFF2708

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,726,745	+				+0.5
2,726,774	+				-1.2
2,726,786	-				-0.7
2,726,786	-				+1.3
2,726,796	-				-0.3
2,726,796	-				+1.2
2,726,796	-				-0.4
2,726,844	+				-0.0
2,726,856	+				-0.4
2,726,882	-				-0.1
2,726,884	+				-0.1
2,726,909	+				+0.2
2,726,945	-		GFF2707	0.11	-0.9
2,726,960	-		GFF2707	0.13	+0.8
2,727,022	-		GFF2707	0.20	-1.2
2,727,039	+		GFF2707	0.22	+1.0
2,727,039	+		GFF2707	0.22	-0.3
2,727,044	+		GFF2707	0.22	-1.1
2,727,044	+		GFF2707	0.22	+0.0
2,727,047	-		GFF2707	0.23	-1.3
2,727,047	-		GFF2707	0.23	-1.3
2,727,049	+		GFF2707	0.23	-1.0
2,727,052	-		GFF2707	0.23	-0.7
2,727,052	-		GFF2707	0.23	+1.0
2,727,052	-		GFF2707	0.23	-0.0
2,727,062	-		GFF2707	0.24	+0.3
2,727,064	+		GFF2707	0.25	-0.2
2,727,064	+		GFF2707	0.25	-0.0
2,727,072	-		GFF2707	0.26	-0.9
2,727,079	+		GFF2707	0.26	-1.7
2,727,087	+		GFF2707	0.27	-0.8
2,727,113	+		GFF2707	0.30	+0.1
2,727,147	+		GFF2707	0.34	-1.2
2,727,159	-		GFF2707	0.35	+1.1
2,727,187	+		GFF2707	0.39	-0.9
2,727,187	+		GFF2707	0.39	-1.2
2,727,188	+		GFF2707	0.39	-1.1
2,727,192	-		GFF2707	0.39	-0.8
2,727,195	-		GFF2707	0.40	+0.2
2,727,205	+		GFF2707	0.41	-0.3
2,727,223	+		GFF2707	0.43	-0.3
2,727,238	+		GFF2707	0.44	+0.2
2,727,268	+		GFF2707	0.48	+1.3
2,727,287	+		GFF2707	0.50	-0.9
2,727,295	-		GFF2707	0.51	-1.7
2,727,317	+		GFF2707	0.53	-0.2
2,727,318	+		GFF2707	0.54	-0.1
2,727,326	-		GFF2707	0.54	+0.3
2,727,326	-		GFF2707	0.54	+1.6
2,727,328	-		GFF2707	0.55	+1.0
2,727,409	+		GFF2707	0.64	-1.2
2,727,409	+		GFF2707	0.64	-1.6
2,727,409	+		GFF2707	0.64	+0.3
2,727,409	+		GFF2707	0.64	-0.1
2,727,409	+		GFF2707	0.64	+0.5
2,727,409	+		GFF2707	0.64	-0.6
2,727,409	+		GFF2707	0.64	+0.8
2,727,409	+		GFF2707	0.64	-2.4
2,727,409	+		GFF2707	0.64	-0.5
2,727,409	+		GFF2707	0.64	+0.4
2,727,409	+		GFF2707	0.64	+0.5
2,727,409	+		GFF2707	0.64	-0.1
2,727,409	+		GFF2707	0.64	-0.9
2,727,409	+		GFF2707	0.64	+0.4
2,727,417	-		GFF2707	0.65	+0.1
2,727,417	-		GFF2707	0.65	-0.9
2,727,417	-		GFF2707	0.65	-1.6
2,727,417	-		GFF2707	0.65	+0.6
2,727,417	-		GFF2707	0.65	+1.0
2,727,417	-		GFF2707	0.65	-1.2
2,727,417	-		GFF2707	0.65	-0.3
2,727,417	-		GFF2707	0.65	-0.0
2,727,417	-		GFF2707	0.65	-0.4
2,727,417	-		GFF2707	0.65	+1.5
2,727,417	-		GFF2707	0.65	+0.1
2,727,417	-		GFF2707	0.65	+0.2
2,727,417	-		GFF2707	0.65	+0.2
2,727,417	-		GFF2707	0.65	+0.6
2,727,417	-		GFF2707	0.65	-0.2
2,727,424	+		GFF2707	0.66	+0.5
2,727,424	+		GFF2707	0.66	+0.6
2,727,434	+		GFF2707	0.67	-0.8
2,727,442	-		GFF2707	0.68	+0.4
2,727,466	+		GFF2707	0.70	-1.1
2,727,474	-		GFF2707	0.71	+1.0
2,727,474	-		GFF2707	0.71	+1.2
2,727,474	-		GFF2707	0.71	-1.7
2,727,474	-		GFF2707	0.71	+0.3
2,727,507	-		GFF2707	0.75	-0.9
2,727,515	-		GFF2707	0.76	-0.9
2,727,517	+		GFF2707	0.76	-2.1
2,727,526	-		GFF2707	0.77	+0.3
2,727,547	-		GFF2707	0.79	-0.2
2,727,577	+		GFF2707	0.83	+1.1
2,727,577	+		GFF2707	0.83	-2.0
2,727,582	+		GFF2707	0.83	-0.3
2,727,582	+		GFF2707	0.83	-1.6
2,727,585	-		GFF2707	0.84	-0.9
2,727,590	-		GFF2707	0.84	-0.2
2,727,590	-		GFF2707	0.84	+0.1
2,727,597	+		GFF2707	0.85	-2.4
2,727,600	-		GFF2707	0.85	+0.1
2,727,602	+		GFF2707	0.86	-1.5
2,727,615	+		GFF2707	0.87	+0.1
2,727,625	+		GFF2707	0.88	+0.8
2,727,645	-				+0.4
2,727,658	+				-0.7
2,727,666	+				+0.8
2,727,666	+				-1.5
2,727,738	+				+0.8
2,727,748	+				-0.1
2,727,751	-				-1.2
2,727,751	-				-2.3
2,727,756	-				+0.1
2,727,780	+				+0.9
2,727,788	-				+1.1
2,727,788	-				-0.5
2,727,788	-				-0.9
2,727,788	-				+1.5
2,727,788	-				-0.2
2,727,814	-				+0.3
2,727,814	-				-0.7
2,727,824	-				+0.4
2,727,854	-				-1.3
2,727,889	+		GFF2708	0.11	-0.9
2,727,889	+		GFF2708	0.11	-1.5
2,727,889	+		GFF2708	0.11	+0.2
2,727,889	+		GFF2708	0.11	-0.0
2,727,889	+		GFF2708	0.11	-2.0
2,727,890	+		GFF2708	0.11	+0.9
2,727,890	+		GFF2708	0.11	+0.4
2,727,897	-		GFF2708	0.12	-0.3
2,727,897	-		GFF2708	0.12	-0.8
2,727,897	-		GFF2708	0.12	+1.1
2,727,898	-		GFF2708	0.12	+0.5
2,727,903	-		GFF2708	0.12	-0.8
2,727,904	-		GFF2708	0.12	-0.4
2,727,939	-		GFF2708	0.15	-1.8
2,727,958	+		GFF2708	0.16	+0.9
2,727,981	-		GFF2708	0.18	-0.0
2,728,006	+		GFF2708	0.19	+0.4
2,728,021	+		GFF2708	0.20	+1.0
2,728,030	+		GFF2708	0.21	-0.2
2,728,051	+		GFF2708	0.22	+0.1
2,728,051	+		GFF2708	0.22	+0.9
2,728,059	-		GFF2708	0.23	-0.1
2,728,059	-		GFF2708	0.23	+1.2
2,728,059	-		GFF2708	0.23	-0.7
2,728,059	-		GFF2708	0.23	-0.9
2,728,059	-		GFF2708	0.23	-0.7
2,728,059	-		GFF2708	0.23	+1.3
2,728,061	+		GFF2708	0.23	-0.2
2,728,061	+		GFF2708	0.23	-1.4
2,728,069	-		GFF2708	0.24	+0.9
2,728,069	-		GFF2708	0.24	-2.6
2,728,082	+		GFF2708	0.24	+0.5
2,728,084	-		GFF2708	0.25	-0.0
2,728,084	-		GFF2708	0.25	+0.2
2,728,109	-		GFF2708	0.26	+0.1
2,728,113	+		GFF2708	0.27	-0.6
2,728,121	-		GFF2708	0.27	+0.7
2,728,134	+		GFF2708	0.28	+0.2
2,728,162	+		GFF2708	0.30	-1.6
2,728,170	-		GFF2708	0.30	+0.9
2,728,199	+		GFF2708	0.32	+0.4
2,728,199	+		GFF2708	0.32	+0.4
2,728,207	-		GFF2708	0.33	+0.2
2,728,207	-		GFF2708	0.33	+0.7
2,728,207	-		GFF2708	0.33	-1.0
2,728,276	-		GFF2708	0.38	+0.2
2,728,278	-		GFF2708	0.38	-0.8
2,728,278	-		GFF2708	0.38	-0.4
2,728,294	-		GFF2708	0.39	-0.9
2,728,304	-		GFF2708	0.40	+0.3
2,728,309	+		GFF2708	0.40	-1.6
2,728,314	+		GFF2708	0.40	-1.4
2,728,317	-		GFF2708	0.40	-1.1
2,728,322	-		GFF2708	0.41	-0.9
2,728,322	-		GFF2708	0.41	+0.5
2,728,322	-		GFF2708	0.41	+0.4
2,728,327	-		GFF2708	0.41	-0.3
2,728,333	-		GFF2708	0.42	-0.7
2,728,345	+		GFF2708	0.42	-0.8
2,728,347	+		GFF2708	0.42	-0.6
2,728,356	-		GFF2708	0.43	-2.6
2,728,361	-		GFF2708	0.43	-0.7
2,728,372	-		GFF2708	0.44	-0.9
2,728,382	+		GFF2708	0.45	-1.0
2,728,382	-		GFF2708	0.45	-1.1
2,728,394	+		GFF2708	0.46	+0.2
2,728,394	+		GFF2708	0.46	-0.0
2,728,402	-		GFF2708	0.46	-0.6
2,728,402	-		GFF2708	0.46	-2.2
2,728,417	-		GFF2708	0.47	-1.3
2,728,469	-		GFF2708	0.51	-0.6
2,728,482	+		GFF2708	0.52	-1.8
2,728,490	-		GFF2708	0.52	+0.5
2,728,505	+		GFF2708	0.53	+0.4
2,728,507	+		GFF2708	0.53	-1.2
2,728,518	+		GFF2708	0.54	-1.2
2,728,564	+		GFF2708	0.57	+0.2
2,728,578	+		GFF2708	0.58	-0.4
2,728,578	+		GFF2708	0.58	-0.4
2,728,583	+		GFF2708	0.59	-1.1
2,728,583	+		GFF2708	0.59	-0.6
2,728,583	+		GFF2708	0.59	+0.2
2,728,583	+		GFF2708	0.59	-0.4
2,728,583	+		GFF2708	0.59	+1.2
2,728,583	+		GFF2708	0.59	-1.3
2,728,583	+		GFF2708	0.59	-0.8
2,728,583	+		GFF2708	0.59	-0.3
2,728,583	+		GFF2708	0.59	+0.2
2,728,583	+		GFF2708	0.59	-0.6
2,728,583	+		GFF2708	0.59	-0.3
2,728,583	+		GFF2708	0.59	-1.4
2,728,583	+		GFF2708	0.59	-0.6
2,728,583	+		GFF2708	0.59	-0.4
2,728,583	+		GFF2708	0.59	+0.3
2,728,583	+		GFF2708	0.59	+0.2
2,728,583	+		GFF2708	0.59	-0.6
2,728,583	+		GFF2708	0.59	-1.9
2,728,583	+		GFF2708	0.59	-0.9
2,728,583	+		GFF2708	0.59	+0.4
2,728,583	+		GFF2708	0.59	-1.1
2,728,591	-		GFF2708	0.59	-0.0
2,728,591	-		GFF2708	0.59	-1.7
2,728,591	-		GFF2708	0.59	+0.0
2,728,591	-		GFF2708	0.59	-0.4
2,728,591	-		GFF2708	0.59	-0.6
2,728,591	-		GFF2708	0.59	-2.2
2,728,591	-		GFF2708	0.59	+0.0
2,728,591	-		GFF2708	0.59	-3.0
2,728,591	-		GFF2708	0.59	+1.0
2,728,591	-		GFF2708	0.59	+0.1
2,728,591	-		GFF2708	0.59	+0.5
2,728,591	-		GFF2708	0.59	-2.2
2,728,591	-		GFF2708	0.59	-0.0
2,728,591	-		GFF2708	0.59	-0.1
2,728,591	-		GFF2708	0.59	+0.0
2,728,591	-		GFF2708	0.59	+0.9
2,728,591	-		GFF2708	0.59	-0.2
2,728,591	-		GFF2708	0.59	+0.9
2,728,591	-		GFF2708	0.59	+0.2
2,728,591	-		GFF2708	0.59	+0.9
2,728,591	-		GFF2708	0.59	-1.2
2,728,591	-		GFF2708	0.59	-1.2
2,728,591	-		GFF2708	0.59	-0.2
2,728,601	-		GFF2708	0.60	-0.4
2,728,606	+		GFF2708	0.60	+1.1
2,728,621	-		GFF2708	0.61	-0.2
2,728,621	-		GFF2708	0.61	+0.7
2,728,678	+		GFF2708	0.65	+1.2
2,728,686	-		GFF2708	0.66	-0.3
2,728,724	-		GFF2708	0.68	-1.0
2,728,729	-		GFF2708	0.69	+0.6
2,728,752	+		GFF2708	0.70	+1.9
2,728,767	+		GFF2708	0.71	-0.9
2,728,772	+		GFF2708	0.71	-1.7
2,728,772	+		GFF2708	0.71	-0.2
2,728,780	-		GFF2708	0.72	-0.5
2,728,782	+		GFF2708	0.72	+0.0
2,728,782	+		GFF2708	0.72	+0.2
2,728,782	+		GFF2708	0.72	+0.6
2,728,782	+		GFF2708	0.72	+0.5
2,728,782	+		GFF2708	0.72	+1.0
2,728,782	+		GFF2708	0.72	+0.1
2,728,782	+		GFF2708	0.72	-0.6
2,728,785	-		GFF2708	0.72	+0.7
2,728,790	-		GFF2708	0.73	-0.4
2,728,790	-		GFF2708	0.73	-0.7
2,728,790	-		GFF2708	0.73	+1.0
2,728,790	-		GFF2708	0.73	-0.4
2,728,790	-		GFF2708	0.73	+0.8
2,728,790	-		GFF2708	0.73	-0.3
2,728,790	-		GFF2708	0.73	+1.7
2,728,805	-		GFF2708	0.74	-0.6
2,728,806	+		GFF2708	0.74	-0.3
2,728,806	+		GFF2708	0.74	-0.4
2,728,819	+		GFF2708	0.75	-0.6
2,728,819	+		GFF2708	0.75	+0.6
2,728,822	-		GFF2708	0.75	-1.7
2,728,824	+		GFF2708	0.75	+0.4
2,728,826	+		GFF2708	0.75	-0.1
2,728,827	-		GFF2708	0.75	-0.2
2,728,827	-		GFF2708	0.75	+0.8
2,728,832	-		GFF2708	0.76	+0.9
2,728,906	-		GFF2708	0.81	-0.7
2,728,963	+		GFF2708	0.84	-2.7
2,728,963	+		GFF2708	0.84	+0.0
2,728,963	+		GFF2708	0.84	+0.1
2,728,963	+		GFF2708	0.84	+0.7
2,728,963	+		GFF2708	0.84	+0.8
2,728,971	-		GFF2708	0.85	+0.4
2,728,971	-		GFF2708	0.85	+1.3
2,728,988	+		GFF2708	0.86	-0.4
2,728,996	-		GFF2708	0.87	+0.2
2,729,008	-		GFF2708	0.88	+0.4
2,729,014	+		GFF2708	0.88	+0.2
2,729,022	+		GFF2708	0.88	+0.8
2,729,022	-		GFF2708	0.88	-0.4
2,729,096	-				-1.1
2,729,122	+				+1.9
2,729,172	+				-0.2
2,729,180	+				-0.3
2,729,183	-				+0.4
2,729,199	+				-1.1
2,729,207	+				-0.2
2,729,207	+				-2.0
2,729,207	-				+1.5
2,729,207	-				-1.6
2,729,207	-				-0.7
2,729,207	-				-0.0
2,729,207	-				+0.6
2,729,207	-				-0.9
2,729,215	-				-0.9
2,729,215	-				-0.4
2,729,215	-				+0.7
2,729,216	+				-1.0
2,729,223	+				+0.5
2,729,224	-				-2.6
2,729,231	-				+0.3
2,729,231	-				+0.9
2,729,248	+				-0.9
2,729,250	-				+1.0
2,729,258	+				+0.7
2,729,258	+				-0.2
2,729,259	+				-0.3
2,729,282	+				+0.6
2,729,308	-				-1.4
2,729,331	+				+0.7
2,729,363	+				+0.6
2,729,363	+				+0.8
2,729,371	-				-0.1
2,729,386	+				-2.3
2,729,393	-				-0.5
2,729,393	-				-0.6
2,729,393	-				-0.4
2,729,393	-				-0.0
2,729,394	-				-0.8
2,729,398	-				-1.5
2,729,403	-				-0.1
2,729,409	-				-0.1
2,729,415	+				-1.0
2,729,418	+				-0.2
2,729,420	+				-0.5
2,729,423	-				-0.2
2,729,428	-				+0.2
2,729,436	-				-1.8
2,729,452	+				+0.5
2,729,452	+				+0.2
2,729,460	-				+0.1
2,729,473	+				-0.8
2,729,473	+				-0.8
2,729,476	-				+0.1
2,729,481	-		GFF2709	0.10	-0.9
2,729,489	-		GFF2709	0.10	-0.5
2,729,496	+		GFF2709	0.11	+0.2
2,729,496	+		GFF2709	0.11	-1.2
2,729,499	+		GFF2709	0.11	+0.1
2,729,504	+		GFF2709	0.11	-0.0
2,729,504	-		GFF2709	0.11	+0.4
2,729,504	-		GFF2709	0.11	+0.9
2,729,509	+		GFF2709	0.11	+0.7
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