Strain Fitness in Sphingobium sp. HT1-2 around GFF2707

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,725,853	-		GFF2705	0.62	-1.6
2,725,859	-		GFF2705	0.62	-1.5
2,725,859	-		GFF2705	0.62	-0.3
2,725,859	-		GFF2705	0.62	-0.1
2,725,860	-		GFF2705	0.62	+1.0
2,725,861	+		GFF2705	0.62	-1.2
2,725,861	+		GFF2705	0.62	-2.5
2,725,863	-		GFF2705	0.62	-0.9
2,725,869	-		GFF2705	0.63	-0.7
2,725,887	+		GFF2705	0.64	-2.2
2,725,888	+		GFF2705	0.64	+0.5
2,725,896	-		GFF2705	0.64	-0.4
2,725,902	+		GFF2705	0.65	-2.2
2,725,910	-		GFF2705	0.65	-1.9
2,725,916	-		GFF2705	0.66	-0.4
2,725,932	-		GFF2705	0.67	+0.1
2,725,933	+		GFF2705	0.67	-0.8
2,725,933	+		GFF2705	0.67	-0.5
2,725,941	-		GFF2705	0.67	-0.8
2,725,941	-		GFF2705	0.67	+0.7
2,725,978	-		GFF2705	0.70	+0.3
2,725,978	-		GFF2705	0.70	+0.1
2,725,978	-		GFF2705	0.70	-1.3
2,725,978	-		GFF2705	0.70	-1.4
2,725,978	-		GFF2705	0.70	-0.0
2,725,978	-		GFF2705	0.70	+0.6
2,725,978	-		GFF2705	0.70	-0.4
2,725,980	+		GFF2705	0.70	-0.3
2,725,990	+		GFF2705	0.70	-1.0
2,725,990	+		GFF2705	0.70	-0.8
2,725,990	+		GFF2705	0.70	-0.0
2,725,990	+		GFF2705	0.70	+0.1
2,725,990	+		GFF2705	0.70	-0.4
2,725,991	+		GFF2705	0.70	+1.0
2,725,997	-		GFF2705	0.71	-1.8
2,725,997	-		GFF2705	0.71	+0.6
2,725,997	-		GFF2705	0.71	+0.6
2,725,998	-		GFF2705	0.71	+0.8
2,726,031	-		GFF2705	0.73	-1.9
2,726,032	+		GFF2705	0.73	+1.1
2,726,033	-		GFF2705	0.73	-0.8
2,726,038	-		GFF2705	0.73	+0.5
2,726,038	-		GFF2705	0.73	-1.8
2,726,049	+		GFF2705	0.74	+0.5
2,726,054	+		GFF2705	0.74	-0.0
2,726,066	+		GFF2705	0.75	-1.3
2,726,073	-		GFF2705	0.75	+0.3
2,726,074	-		GFF2705	0.76	-2.5
2,726,074	-		GFF2705	0.76	-2.9
2,726,080	+		GFF2705	0.76	-0.5
2,726,080	-		GFF2705	0.76	-2.6
2,726,080	-		GFF2705	0.76	+0.2
2,726,086	+		GFF2705	0.76	+0.8
2,726,086	+		GFF2705	0.76	+0.2
2,726,086	+		GFF2705	0.76	-1.1
2,726,086	+		GFF2705	0.76	-1.6
2,726,086	+		GFF2705	0.76	+0.0
2,726,091	+		GFF2705	0.77	+1.1
2,726,094	-		GFF2705	0.77	-1.9
2,726,099	-		GFF2705	0.77	-0.2
2,726,119	+		GFF2705	0.78	-0.2
2,726,119	+		GFF2705	0.78	+1.0
2,726,121	-		GFF2705	0.78	-1.4
2,726,124	+		GFF2705	0.79	-1.4
2,726,127	-		GFF2705	0.79	-1.7
2,726,129	+		GFF2705	0.79	-1.3
2,726,129	+		GFF2705	0.79	-0.7
2,726,129	+		GFF2705	0.79	+1.4
2,726,129	+		GFF2705	0.79	+0.5
2,726,134	+		GFF2705	0.79	-1.2
2,726,134	+		GFF2705	0.79	-0.5
2,726,134	+		GFF2705	0.79	+0.5
2,726,134	+		GFF2705	0.79	-0.4
2,726,134	+		GFF2705	0.79	+0.1
2,726,137	-		GFF2705	0.79	-0.6
2,726,137	-		GFF2705	0.79	-1.4
2,726,137	-		GFF2705	0.79	-0.5
2,726,137	-		GFF2705	0.79	+0.2
2,726,137	-		GFF2705	0.79	+0.4
2,726,142	-		GFF2705	0.80	-2.2
2,726,142	-		GFF2705	0.80	+0.3
2,726,142	-		GFF2705	0.80	-0.3
2,726,142	-		GFF2705	0.80	-1.7
2,726,142	-		GFF2705	0.80	-0.9
2,726,147	-		GFF2705	0.80	+0.0
2,726,153	+		GFF2705	0.80	+0.7
2,726,153	+		GFF2705	0.80	+0.3
2,726,153	+		GFF2705	0.80	+0.9
2,726,153	+		GFF2705	0.80	-0.7
2,726,161	-		GFF2705	0.81	+1.5
2,726,172	-		GFF2705	0.82	-1.3
2,726,179	-		GFF2705	0.82	-1.3
2,726,180	-		GFF2705	0.82	-1.5
2,726,217	-		GFF2705	0.84	+0.1
2,726,225	-		GFF2705	0.85	-0.7
2,726,232	+		GFF2705	0.85	+0.3
2,726,232	+		GFF2705	0.85	+0.6
2,726,246	+		GFF2705	0.86	+0.5
2,726,249	-		GFF2705	0.86	+0.1
2,726,249	-		GFF2705	0.86	+0.1
2,726,254	-		GFF2705	0.87	-0.4
2,726,254	-		GFF2705	0.87	-0.1
2,726,256	+		GFF2705	0.87	-0.3
2,726,256	-		GFF2705	0.87	-0.3
2,726,277	+		GFF2705	0.88	+0.1
2,726,277	+		GFF2705	0.88	+0.2
2,726,286	-		GFF2705	0.89	+0.5
2,726,306	-		GFF2705	0.90	-1.5
2,726,306	-		GFF2705	0.90	-0.4
2,726,306	-		GFF2705	0.90	+1.0
2,726,306	-		GFF2705	0.90	-0.5
2,726,306	-		GFF2705	0.90	-0.1
2,726,310	-				+0.4
2,726,316	-				-0.5
2,726,316	-				-0.9
2,726,328	+				+1.0
2,726,328	-				-0.4
2,726,335	+				-1.2
2,726,335	+				+0.4
2,726,343	+				+1.2
2,726,343	+				+0.8
2,726,343	+				-1.8
2,726,343	+				+1.6
2,726,343	+				-0.1
2,726,343	+				-0.8
2,726,343	+				-1.2
2,726,343	+				+0.1
2,726,343	+				+1.0
2,726,343	+				+1.8
2,726,343	+				+0.5
2,726,343	+				-2.6
2,726,343	+				-0.1
2,726,343	+				+1.3
2,726,343	+				+0.4
2,726,350	-				+0.1
2,726,350	-				-0.1
2,726,351	-				+2.0
2,726,351	-				+0.5
2,726,351	-				+0.1
2,726,351	-				+0.1
2,726,351	-				-1.1
2,726,351	-				+0.2
2,726,351	-				+0.0
2,726,351	-				-0.2
2,726,351	-				+0.0
2,726,351	-				-0.5
2,726,351	-				+1.3
2,726,351	-				-1.7
2,726,351	-				-0.2
2,726,356	+				+0.4
2,726,356	+				-0.1
2,726,356	+				+0.2
2,726,356	+				+0.3
2,726,356	+				+0.4
2,726,356	+				-1.3
2,726,356	+				-0.0
2,726,356	+				-1.0
2,726,356	+				-0.7
2,726,361	+				+0.9
2,726,364	-				+1.0
2,726,364	-				+0.4
2,726,364	-				-0.9
2,726,364	-				-0.2
2,726,364	-				-0.1
2,726,364	-				+0.8
2,726,364	-				-1.3
2,726,368	-				+0.2
2,726,379	+				+0.3
2,726,387	-				-1.5
2,726,393	+				-0.1
2,726,416	+				-0.6
2,726,439	+				-2.3
2,726,440	+				-0.2
2,726,440	-				-0.7
2,726,440	-				-1.8
2,726,442	+				+0.9
2,726,445	-				-0.4
2,726,447	-				-1.9
2,726,452	+				-1.0
2,726,456	+				-1.9
2,726,456	+				+0.2
2,726,469	-				+0.4
2,726,485	-				-0.9
2,726,490	-				+0.2
2,726,492	+				-0.0
2,726,492	+				-1.5
2,726,492	+				+0.4
2,726,492	+				-0.3
2,726,492	+				+0.2
2,726,492	+				-0.4
2,726,492	+				-1.1
2,726,492	+				-0.5
2,726,496	+				-2.5
2,726,496	+				-0.5
2,726,496	+				-1.1
2,726,496	+				-0.2
2,726,496	+				-0.0
2,726,496	+				+0.6
2,726,496	+				-1.2
2,726,496	+				+0.7
2,726,500	-		GFF2706	0.11	-0.0
2,726,500	-		GFF2706	0.11	+0.4
2,726,500	-		GFF2706	0.11	+0.6
2,726,500	-		GFF2706	0.11	+0.1
2,726,500	-		GFF2706	0.11	+0.7
2,726,500	-		GFF2706	0.11	+0.7
2,726,500	-		GFF2706	0.11	-0.9
2,726,500	-		GFF2706	0.11	-0.8
2,726,500	-		GFF2706	0.11	-0.1
2,726,504	-		GFF2706	0.12	+1.1
2,726,504	-		GFF2706	0.12	+1.1
2,726,504	-		GFF2706	0.12	+0.4
2,726,504	-		GFF2706	0.12	-0.4
2,726,504	-		GFF2706	0.12	+0.0
2,726,504	-		GFF2706	0.12	-1.2
2,726,504	-		GFF2706	0.12	-0.4
2,726,504	-		GFF2706	0.12	-0.6
2,726,513	+		GFF2706	0.15	+0.3
2,726,524	+		GFF2706	0.19	+0.7
2,726,525	+		GFF2706	0.20	+0.6
2,726,531	-		GFF2706	0.22	+0.8
2,726,535	+		GFF2706	0.23	+0.1
2,726,535	+		GFF2706	0.23	-1.1
2,726,535	+		GFF2706	0.23	-1.8
2,726,535	+		GFF2706	0.23	-0.5
2,726,535	+		GFF2706	0.23	-1.0
2,726,538	-		GFF2706	0.24	-3.8
2,726,543	-		GFF2706	0.26	-1.2
2,726,543	-		GFF2706	0.26	+0.7
2,726,543	-		GFF2706	0.26	+1.0
2,726,548	+		GFF2706	0.27	-0.7
2,726,556	-		GFF2706	0.30	+0.8
2,726,578	+		GFF2706	0.37	+0.1
2,726,588	+		GFF2706	0.41	+0.3
2,726,588	+		GFF2706	0.41	-0.1
2,726,589	+		GFF2706	0.41	-0.1
2,726,589	+		GFF2706	0.41	+0.5
2,726,594	+		GFF2706	0.43	+1.1
2,726,597	-		GFF2706	0.44	-0.7
2,726,597	-		GFF2706	0.44	-0.1
2,726,598	-		GFF2706	0.44	+0.7
2,726,600	+		GFF2706	0.45	-0.3
2,726,600	+		GFF2706	0.45	+0.9
2,726,605	+		GFF2706	0.46	+0.4
2,726,605	+		GFF2706	0.46	+0.4
2,726,605	+		GFF2706	0.46	+1.3
2,726,605	+		GFF2706	0.46	-1.3
2,726,605	+		GFF2706	0.46	+0.3
2,726,607	-		GFF2706	0.47	-0.3
2,726,607	-		GFF2706	0.47	-1.3
2,726,607	-		GFF2706	0.47	-0.3
2,726,608	-		GFF2706	0.47	-2.7
2,726,613	-		GFF2706	0.49	-1.2
2,726,613	-		GFF2706	0.49	-1.2
2,726,613	-		GFF2706	0.49	-0.3
2,726,613	-		GFF2706	0.49	-0.8
2,726,613	-		GFF2706	0.49	-0.5
2,726,620	+		GFF2706	0.52	-0.2
2,726,622	-		GFF2706	0.52	-0.2
2,726,628	-		GFF2706	0.54	+0.6
2,726,657	-		GFF2706	0.64	-0.5
2,726,745	+				+0.5
2,726,774	+				-1.2
2,726,786	-				-0.7
2,726,786	-				+1.3
2,726,796	-				-0.3
2,726,796	-				+1.2
2,726,796	-				-0.4
2,726,844	+				-0.0
2,726,856	+				-0.4
2,726,882	-				-0.1
2,726,884	+				-0.1
2,726,909	+				+0.2
2,726,945	-		GFF2707	0.11	-0.9
2,726,960	-		GFF2707	0.13	+0.8
2,727,022	-		GFF2707	0.20	-1.2
2,727,039	+		GFF2707	0.22	+1.0
2,727,039	+		GFF2707	0.22	-0.3
2,727,044	+		GFF2707	0.22	-1.1
2,727,044	+		GFF2707	0.22	+0.0
2,727,047	-		GFF2707	0.23	-1.3
2,727,047	-		GFF2707	0.23	-1.3
2,727,049	+		GFF2707	0.23	-1.0
2,727,052	-		GFF2707	0.23	-0.7
2,727,052	-		GFF2707	0.23	+1.0
2,727,052	-		GFF2707	0.23	-0.0
2,727,062	-		GFF2707	0.24	+0.3
2,727,064	+		GFF2707	0.25	-0.2
2,727,064	+		GFF2707	0.25	-0.0
2,727,072	-		GFF2707	0.26	-0.9
2,727,079	+		GFF2707	0.26	-1.7
2,727,087	+		GFF2707	0.27	-0.8
2,727,113	+		GFF2707	0.30	+0.1
2,727,147	+		GFF2707	0.34	-1.2
2,727,159	-		GFF2707	0.35	+1.1
2,727,187	+		GFF2707	0.39	-0.9
2,727,187	+		GFF2707	0.39	-1.2
2,727,188	+		GFF2707	0.39	-1.1
2,727,192	-		GFF2707	0.39	-0.8
2,727,195	-		GFF2707	0.40	+0.2
2,727,205	+		GFF2707	0.41	-0.3
2,727,223	+		GFF2707	0.43	-0.3
2,727,238	+		GFF2707	0.44	+0.2
2,727,268	+		GFF2707	0.48	+1.3
2,727,287	+		GFF2707	0.50	-0.9
2,727,295	-		GFF2707	0.51	-1.7
2,727,317	+		GFF2707	0.53	-0.2
2,727,318	+		GFF2707	0.54	-0.1
2,727,326	-		GFF2707	0.54	+0.3
2,727,326	-		GFF2707	0.54	+1.6
2,727,328	-		GFF2707	0.55	+1.0
2,727,409	+		GFF2707	0.64	-1.2
2,727,409	+		GFF2707	0.64	-1.6
2,727,409	+		GFF2707	0.64	+0.3
2,727,409	+		GFF2707	0.64	-0.1
2,727,409	+		GFF2707	0.64	+0.5
2,727,409	+		GFF2707	0.64	-0.6
2,727,409	+		GFF2707	0.64	+0.8
2,727,409	+		GFF2707	0.64	-2.4
2,727,409	+		GFF2707	0.64	-0.5
2,727,409	+		GFF2707	0.64	+0.4
2,727,409	+		GFF2707	0.64	+0.5
2,727,409	+		GFF2707	0.64	-0.1
2,727,409	+		GFF2707	0.64	-0.9
2,727,409	+		GFF2707	0.64	+0.4
2,727,417	-		GFF2707	0.65	+0.1
2,727,417	-		GFF2707	0.65	-0.9
2,727,417	-		GFF2707	0.65	-1.6
2,727,417	-		GFF2707	0.65	+0.6
2,727,417	-		GFF2707	0.65	+1.0
2,727,417	-		GFF2707	0.65	-1.2
2,727,417	-		GFF2707	0.65	-0.3
2,727,417	-		GFF2707	0.65	-0.0
2,727,417	-		GFF2707	0.65	-0.4
2,727,417	-		GFF2707	0.65	+1.5
2,727,417	-		GFF2707	0.65	+0.1
2,727,417	-		GFF2707	0.65	+0.2
2,727,417	-		GFF2707	0.65	+0.2
2,727,417	-		GFF2707	0.65	+0.6
2,727,417	-		GFF2707	0.65	-0.2
2,727,424	+		GFF2707	0.66	+0.5
2,727,424	+		GFF2707	0.66	+0.6
2,727,434	+		GFF2707	0.67	-0.8
2,727,442	-		GFF2707	0.68	+0.4
2,727,466	+		GFF2707	0.70	-1.1
2,727,474	-		GFF2707	0.71	+1.0
2,727,474	-		GFF2707	0.71	+1.2
2,727,474	-		GFF2707	0.71	-1.7
2,727,474	-		GFF2707	0.71	+0.3
2,727,507	-		GFF2707	0.75	-0.9
2,727,515	-		GFF2707	0.76	-0.9
2,727,517	+		GFF2707	0.76	-2.1
2,727,526	-		GFF2707	0.77	+0.3
2,727,547	-		GFF2707	0.79	-0.2
2,727,577	+		GFF2707	0.83	+1.1
2,727,577	+		GFF2707	0.83	-2.0
2,727,582	+		GFF2707	0.83	-0.3
2,727,582	+		GFF2707	0.83	-1.6
2,727,585	-		GFF2707	0.84	-0.9
2,727,590	-		GFF2707	0.84	-0.2
2,727,590	-		GFF2707	0.84	+0.1
2,727,597	+		GFF2707	0.85	-2.4
2,727,600	-		GFF2707	0.85	+0.1
2,727,602	+		GFF2707	0.86	-1.5
2,727,615	+		GFF2707	0.87	+0.1
2,727,625	+		GFF2707	0.88	+0.8
2,727,645	-				+0.4
2,727,658	+				-0.7
2,727,666	+				+0.8
2,727,666	+				-1.5
2,727,738	+				+0.8
2,727,748	+				-0.1
2,727,751	-				-1.2
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