Strain Fitness in Sphingobium sp. HT1-2 around GFF2706

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,725,474	-		GFF2705	0.38	+0.1
2,725,474	-		GFF2705	0.38	-1.5
2,725,479	-		GFF2705	0.39	-0.3
2,725,482	+		GFF2705	0.39	+0.1
2,725,482	+		GFF2705	0.39	+0.6
2,725,482	+		GFF2705	0.39	-0.9
2,725,502	+		GFF2705	0.40	+0.2
2,725,506	-		GFF2705	0.40	+0.5
2,725,516	+		GFF2705	0.41	+0.6
2,725,519	-		GFF2705	0.41	+0.4
2,725,519	-		GFF2705	0.41	+0.7
2,725,537	-		GFF2705	0.42	-0.7
2,725,556	+		GFF2705	0.43	+0.4
2,725,559	+		GFF2705	0.44	-0.9
2,725,564	+		GFF2705	0.44	-1.6
2,725,564	+		GFF2705	0.44	-1.0
2,725,565	-		GFF2705	0.44	-0.4
2,725,566	+		GFF2705	0.44	-0.1
2,725,567	-		GFF2705	0.44	-2.5
2,725,567	-		GFF2705	0.44	+0.6
2,725,572	-		GFF2705	0.44	-0.5
2,725,579	+		GFF2705	0.45	+0.2
2,725,587	+		GFF2705	0.45	+0.3
2,725,592	+		GFF2705	0.46	+0.4
2,725,592	+		GFF2705	0.46	-2.4
2,725,592	+		GFF2705	0.46	+0.1
2,725,592	+		GFF2705	0.46	-0.3
2,725,592	+		GFF2705	0.46	-0.8
2,725,592	+		GFF2705	0.46	+0.1
2,725,592	+		GFF2705	0.46	+1.0
2,725,592	+		GFF2705	0.46	+0.2
2,725,592	+		GFF2705	0.46	+0.2
2,725,592	+		GFF2705	0.46	-1.1
2,725,592	+		GFF2705	0.46	-0.8
2,725,592	+		GFF2705	0.46	-0.4
2,725,592	+		GFF2705	0.46	-0.5
2,725,592	+		GFF2705	0.46	+0.2
2,725,595	-		GFF2705	0.46	-1.3
2,725,597	+		GFF2705	0.46	+0.2
2,725,600	-		GFF2705	0.46	+0.7
2,725,600	-		GFF2705	0.46	-1.5
2,725,600	-		GFF2705	0.46	+1.0
2,725,600	-		GFF2705	0.46	-2.6
2,725,600	-		GFF2705	0.46	-1.7
2,725,600	-		GFF2705	0.46	+0.1
2,725,600	-		GFF2705	0.46	+0.2
2,725,600	-		GFF2705	0.46	-0.2
2,725,600	-		GFF2705	0.46	+0.1
2,725,600	-		GFF2705	0.46	+0.2
2,725,600	-		GFF2705	0.46	+0.3
2,725,600	-		GFF2705	0.46	-0.6
2,725,600	-		GFF2705	0.46	+0.3
2,725,600	-		GFF2705	0.46	+0.7
2,725,600	-		GFF2705	0.46	+0.2
2,725,602	+		GFF2705	0.46	-0.0
2,725,605	+		GFF2705	0.46	+1.1
2,725,628	-		GFF2705	0.48	+0.9
2,725,628	-		GFF2705	0.48	-0.7
2,725,642	+		GFF2705	0.49	+0.5
2,725,642	+		GFF2705	0.49	+0.6
2,725,642	+		GFF2705	0.49	-0.8
2,725,642	+		GFF2705	0.49	-0.4
2,725,642	+		GFF2705	0.49	-0.2
2,725,642	+		GFF2705	0.49	-0.4
2,725,657	+		GFF2705	0.50	+0.3
2,725,660	-		GFF2705	0.50	+0.2
2,725,669	+		GFF2705	0.50	+0.2
2,725,669	+		GFF2705	0.50	+0.9
2,725,676	+		GFF2705	0.51	+0.5
2,725,677	-		GFF2705	0.51	-0.8
2,725,677	-		GFF2705	0.51	+0.3
2,725,682	+		GFF2705	0.51	+1.3
2,725,682	+		GFF2705	0.51	-0.2
2,725,685	-		GFF2705	0.51	-0.3
2,725,685	-		GFF2705	0.51	-0.6
2,725,721	+		GFF2705	0.54	+1.2
2,725,731	+		GFF2705	0.54	+1.1
2,725,731	+		GFF2705	0.54	-0.2
2,725,739	-		GFF2705	0.55	-0.7
2,725,739	-		GFF2705	0.55	-0.9
2,725,739	-		GFF2705	0.55	-2.3
2,725,739	-		GFF2705	0.55	+0.6
2,725,740	+		GFF2705	0.55	+0.3
2,725,741	+		GFF2705	0.55	-1.0
2,725,744	-		GFF2705	0.55	-0.2
2,725,745	+		GFF2705	0.55	-0.4
2,725,745	+		GFF2705	0.55	+0.2
2,725,748	-		GFF2705	0.55	+0.2
2,725,753	-		GFF2705	0.56	-0.2
2,725,759	-		GFF2705	0.56	-1.7
2,725,759	-		GFF2705	0.56	-1.9
2,725,777	+		GFF2705	0.57	+1.7
2,725,779	-		GFF2705	0.57	-0.3
2,725,787	+		GFF2705	0.58	-0.7
2,725,795	-		GFF2705	0.58	-0.7
2,725,806	-		GFF2705	0.59	+0.3
2,725,815	+		GFF2705	0.59	-0.3
2,725,815	+		GFF2705	0.59	-0.5
2,725,815	+		GFF2705	0.59	-0.4
2,725,819	+		GFF2705	0.60	-1.3
2,725,819	+		GFF2705	0.60	-1.6
2,725,820	+		GFF2705	0.60	+1.2
2,725,820	+		GFF2705	0.60	+1.2
2,725,823	-		GFF2705	0.60	-1.2
2,725,823	-		GFF2705	0.60	+0.6
2,725,823	-		GFF2705	0.60	+1.0
2,725,834	+		GFF2705	0.61	+0.4
2,725,845	+		GFF2705	0.61	-0.4
2,725,845	+		GFF2705	0.61	-1.4
2,725,853	-		GFF2705	0.62	-1.6
2,725,859	-		GFF2705	0.62	-1.5
2,725,859	-		GFF2705	0.62	-0.3
2,725,859	-		GFF2705	0.62	-0.1
2,725,860	-		GFF2705	0.62	+1.0
2,725,861	+		GFF2705	0.62	-1.2
2,725,861	+		GFF2705	0.62	-2.5
2,725,863	-		GFF2705	0.62	-0.9
2,725,869	-		GFF2705	0.63	-0.7
2,725,887	+		GFF2705	0.64	-2.2
2,725,888	+		GFF2705	0.64	+0.5
2,725,896	-		GFF2705	0.64	-0.4
2,725,902	+		GFF2705	0.65	-2.2
2,725,910	-		GFF2705	0.65	-1.9
2,725,916	-		GFF2705	0.66	-0.4
2,725,932	-		GFF2705	0.67	+0.1
2,725,933	+		GFF2705	0.67	-0.8
2,725,933	+		GFF2705	0.67	-0.5
2,725,941	-		GFF2705	0.67	-0.8
2,725,941	-		GFF2705	0.67	+0.7
2,725,978	-		GFF2705	0.70	+0.3
2,725,978	-		GFF2705	0.70	+0.1
2,725,978	-		GFF2705	0.70	-1.3
2,725,978	-		GFF2705	0.70	-1.4
2,725,978	-		GFF2705	0.70	-0.0
2,725,978	-		GFF2705	0.70	+0.6
2,725,978	-		GFF2705	0.70	-0.4
2,725,980	+		GFF2705	0.70	-0.3
2,725,990	+		GFF2705	0.70	-1.0
2,725,990	+		GFF2705	0.70	-0.8
2,725,990	+		GFF2705	0.70	-0.0
2,725,990	+		GFF2705	0.70	+0.1
2,725,990	+		GFF2705	0.70	-0.4
2,725,991	+		GFF2705	0.70	+1.0
2,725,997	-		GFF2705	0.71	-1.8
2,725,997	-		GFF2705	0.71	+0.6
2,725,997	-		GFF2705	0.71	+0.6
2,725,998	-		GFF2705	0.71	+0.8
2,726,031	-		GFF2705	0.73	-1.9
2,726,032	+		GFF2705	0.73	+1.1
2,726,033	-		GFF2705	0.73	-0.8
2,726,038	-		GFF2705	0.73	+0.5
2,726,038	-		GFF2705	0.73	-1.8
2,726,049	+		GFF2705	0.74	+0.5
2,726,054	+		GFF2705	0.74	-0.0
2,726,066	+		GFF2705	0.75	-1.3
2,726,073	-		GFF2705	0.75	+0.3
2,726,074	-		GFF2705	0.76	-2.5
2,726,074	-		GFF2705	0.76	-2.9
2,726,080	+		GFF2705	0.76	-0.5
2,726,080	-		GFF2705	0.76	-2.6
2,726,080	-		GFF2705	0.76	+0.2
2,726,086	+		GFF2705	0.76	+0.8
2,726,086	+		GFF2705	0.76	+0.2
2,726,086	+		GFF2705	0.76	-1.1
2,726,086	+		GFF2705	0.76	-1.6
2,726,086	+		GFF2705	0.76	+0.0
2,726,091	+		GFF2705	0.77	+1.1
2,726,094	-		GFF2705	0.77	-1.9
2,726,099	-		GFF2705	0.77	-0.2
2,726,119	+		GFF2705	0.78	-0.2
2,726,119	+		GFF2705	0.78	+1.0
2,726,121	-		GFF2705	0.78	-1.4
2,726,124	+		GFF2705	0.79	-1.4
2,726,127	-		GFF2705	0.79	-1.7
2,726,129	+		GFF2705	0.79	-1.3
2,726,129	+		GFF2705	0.79	-0.7
2,726,129	+		GFF2705	0.79	+1.4
2,726,129	+		GFF2705	0.79	+0.5
2,726,134	+		GFF2705	0.79	-1.2
2,726,134	+		GFF2705	0.79	-0.5
2,726,134	+		GFF2705	0.79	+0.5
2,726,134	+		GFF2705	0.79	-0.4
2,726,134	+		GFF2705	0.79	+0.1
2,726,137	-		GFF2705	0.79	-0.6
2,726,137	-		GFF2705	0.79	-1.4
2,726,137	-		GFF2705	0.79	-0.5
2,726,137	-		GFF2705	0.79	+0.2
2,726,137	-		GFF2705	0.79	+0.4
2,726,142	-		GFF2705	0.80	-2.2
2,726,142	-		GFF2705	0.80	+0.3
2,726,142	-		GFF2705	0.80	-0.3
2,726,142	-		GFF2705	0.80	-1.7
2,726,142	-		GFF2705	0.80	-0.9
2,726,147	-		GFF2705	0.80	+0.0
2,726,153	+		GFF2705	0.80	+0.7
2,726,153	+		GFF2705	0.80	+0.3
2,726,153	+		GFF2705	0.80	+0.9
2,726,153	+		GFF2705	0.80	-0.7
2,726,161	-		GFF2705	0.81	+1.5
2,726,172	-		GFF2705	0.82	-1.3
2,726,179	-		GFF2705	0.82	-1.3
2,726,180	-		GFF2705	0.82	-1.5
2,726,217	-		GFF2705	0.84	+0.1
2,726,225	-		GFF2705	0.85	-0.7
2,726,232	+		GFF2705	0.85	+0.3
2,726,232	+		GFF2705	0.85	+0.6
2,726,246	+		GFF2705	0.86	+0.5
2,726,249	-		GFF2705	0.86	+0.1
2,726,249	-		GFF2705	0.86	+0.1
2,726,254	-		GFF2705	0.87	-0.4
2,726,254	-		GFF2705	0.87	-0.1
2,726,256	+		GFF2705	0.87	-0.3
2,726,256	-		GFF2705	0.87	-0.3
2,726,277	+		GFF2705	0.88	+0.1
2,726,277	+		GFF2705	0.88	+0.2
2,726,286	-		GFF2705	0.89	+0.5
2,726,306	-		GFF2705	0.90	-1.5
2,726,306	-		GFF2705	0.90	-0.4
2,726,306	-		GFF2705	0.90	+1.0
2,726,306	-		GFF2705	0.90	-0.5
2,726,306	-		GFF2705	0.90	-0.1
2,726,310	-				+0.4
2,726,316	-				-0.5
2,726,316	-				-0.9
2,726,328	+				+1.0
2,726,328	-				-0.4
2,726,335	+				-1.2
2,726,335	+				+0.4
2,726,343	+				+1.2
2,726,343	+				+0.8
2,726,343	+				-1.8
2,726,343	+				+1.6
2,726,343	+				-0.1
2,726,343	+				-0.8
2,726,343	+				-1.2
2,726,343	+				+0.1
2,726,343	+				+1.0
2,726,343	+				+1.8
2,726,343	+				+0.5
2,726,343	+				-2.6
2,726,343	+				-0.1
2,726,343	+				+1.3
2,726,343	+				+0.4
2,726,350	-				+0.1
2,726,350	-				-0.1
2,726,351	-				+2.0
2,726,351	-				+0.5
2,726,351	-				+0.1
2,726,351	-				+0.1
2,726,351	-				-1.1
2,726,351	-				+0.2
2,726,351	-				+0.0
2,726,351	-				-0.2
2,726,351	-				+0.0
2,726,351	-				-0.5
2,726,351	-				+1.3
2,726,351	-				-1.7
2,726,351	-				-0.2
2,726,356	+				+0.4
2,726,356	+				-0.1
2,726,356	+				+0.2
2,726,356	+				+0.3
2,726,356	+				+0.4
2,726,356	+				-1.3
2,726,356	+				-0.0
2,726,356	+				-1.0
2,726,356	+				-0.7
2,726,361	+				+0.9
2,726,364	-				+1.0
2,726,364	-				+0.4
2,726,364	-				-0.9
2,726,364	-				-0.2
2,726,364	-				-0.1
2,726,364	-				+0.8
2,726,364	-				-1.3
2,726,368	-				+0.2
2,726,379	+				+0.3
2,726,387	-				-1.5
2,726,393	+				-0.1
2,726,416	+				-0.6
2,726,439	+				-2.3
2,726,440	+				-0.2
2,726,440	-				-0.7
2,726,440	-				-1.8
2,726,442	+				+0.9
2,726,445	-				-0.4
2,726,447	-				-1.9
2,726,452	+				-1.0
2,726,456	+				-1.9
2,726,456	+				+0.2
2,726,469	-				+0.4
2,726,485	-				-0.9
2,726,490	-				+0.2
2,726,492	+				-0.0
2,726,492	+				-1.5
2,726,492	+				+0.4
2,726,492	+				-0.3
2,726,492	+				+0.2
2,726,492	+				-0.4
2,726,492	+				-1.1
2,726,492	+				-0.5
2,726,496	+				-2.5
2,726,496	+				-0.5
2,726,496	+				-1.1
2,726,496	+				-0.2
2,726,496	+				-0.0
2,726,496	+				+0.6
2,726,496	+				-1.2
2,726,496	+				+0.7
2,726,500	-		GFF2706	0.11	-0.0
2,726,500	-		GFF2706	0.11	+0.4
2,726,500	-		GFF2706	0.11	+0.6
2,726,500	-		GFF2706	0.11	+0.1
2,726,500	-		GFF2706	0.11	+0.7
2,726,500	-		GFF2706	0.11	+0.7
2,726,500	-		GFF2706	0.11	-0.9
2,726,500	-		GFF2706	0.11	-0.8
2,726,500	-		GFF2706	0.11	-0.1
2,726,504	-		GFF2706	0.12	+1.1
2,726,504	-		GFF2706	0.12	+1.1
2,726,504	-		GFF2706	0.12	+0.4
2,726,504	-		GFF2706	0.12	-0.4
2,726,504	-		GFF2706	0.12	+0.0
2,726,504	-		GFF2706	0.12	-1.2
2,726,504	-		GFF2706	0.12	-0.4
2,726,504	-		GFF2706	0.12	-0.6
2,726,513	+		GFF2706	0.15	+0.3
2,726,524	+		GFF2706	0.19	+0.7
2,726,525	+		GFF2706	0.20	+0.6
2,726,531	-		GFF2706	0.22	+0.8
2,726,535	+		GFF2706	0.23	+0.1
2,726,535	+		GFF2706	0.23	-1.1
2,726,535	+		GFF2706	0.23	-1.8
2,726,535	+		GFF2706	0.23	-0.5
2,726,535	+		GFF2706	0.23	-1.0
2,726,538	-		GFF2706	0.24	-3.8
2,726,543	-		GFF2706	0.26	-1.2
2,726,543	-		GFF2706	0.26	+0.7
2,726,543	-		GFF2706	0.26	+1.0
2,726,548	+		GFF2706	0.27	-0.7
2,726,556	-		GFF2706	0.30	+0.8
2,726,578	+		GFF2706	0.37	+0.1
2,726,588	+		GFF2706	0.41	+0.3
2,726,588	+		GFF2706	0.41	-0.1
2,726,589	+		GFF2706	0.41	-0.1
2,726,589	+		GFF2706	0.41	+0.5
2,726,594	+		GFF2706	0.43	+1.1
2,726,597	-		GFF2706	0.44	-0.7
2,726,597	-		GFF2706	0.44	-0.1
2,726,598	-		GFF2706	0.44	+0.7
2,726,600	+		GFF2706	0.45	-0.3
2,726,600	+		GFF2706	0.45	+0.9
2,726,605	+		GFF2706	0.46	+0.4
2,726,605	+		GFF2706	0.46	+0.4
2,726,605	+		GFF2706	0.46	+1.3
2,726,605	+		GFF2706	0.46	-1.3
2,726,605	+		GFF2706	0.46	+0.3
2,726,607	-		GFF2706	0.47	-0.3
2,726,607	-		GFF2706	0.47	-1.3
2,726,607	-		GFF2706	0.47	-0.3
2,726,608	-		GFF2706	0.47	-2.7
2,726,613	-		GFF2706	0.49	-1.2
2,726,613	-		GFF2706	0.49	-1.2
2,726,613	-		GFF2706	0.49	-0.3
2,726,613	-		GFF2706	0.49	-0.8
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2,727,645	-				+0.4
2,727,658	+				-0.7
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2,727,738	+				+0.8
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2,727,751	-				-2.3
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