Strain Fitness in Sphingobium sp. HT1-2 around GFF2704

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,723,471	-		GFF2702	0.63	-1.9
2,723,471	-		GFF2702	0.63	-0.5
2,723,477	-		GFF2702	0.63	-0.4
2,723,503	+		GFF2702	0.65	+0.2
2,723,511	-		GFF2702	0.66	+0.3
2,723,541	-		GFF2702	0.68	-1.4
2,723,555	+		GFF2702	0.69	+0.2
2,723,557	-		GFF2702	0.69	-0.4
2,723,565	+		GFF2702	0.69	-0.3
2,723,565	+		GFF2702	0.69	+0.2
2,723,565	+		GFF2702	0.69	-1.8
2,723,565	+		GFF2702	0.69	+1.0
2,723,565	+		GFF2702	0.69	+0.6
2,723,565	+		GFF2702	0.69	-0.2
2,723,573	-		GFF2702	0.70	-0.0
2,723,573	-		GFF2702	0.70	-0.1
2,723,593	+		GFF2702	0.71	+0.9
2,723,593	+		GFF2702	0.71	-1.7
2,723,593	+		GFF2702	0.71	-1.7
2,723,593	-		GFF2702	0.71	-1.8
2,723,601	-		GFF2702	0.72	+0.5
2,723,601	-		GFF2702	0.72	+0.5
2,723,601	-		GFF2702	0.72	-2.4
2,723,611	-		GFF2702	0.72	+0.3
2,723,617	+		GFF2702	0.73	-1.2
2,723,638	-		GFF2702	0.74	-0.7
2,723,639	+		GFF2702	0.74	+0.9
2,723,661	-		GFF2702	0.76	+0.4
2,723,661	-		GFF2702	0.76	-0.4
2,723,668	+		GFF2702	0.76	-1.3
2,723,676	-		GFF2702	0.77	+0.2
2,723,699	+		GFF2702	0.79	-0.1
2,723,744	+		GFF2702	0.82	+0.2
2,723,752	-		GFF2702	0.82	+1.0
2,723,783	+		GFF2702	0.84	-1.7
2,723,783	-		GFF2702	0.84	-0.6
2,723,836	-		GFF2702	0.88	-1.5
2,723,842	+		GFF2702	0.89	+1.0
2,723,850	+		GFF2702	0.89	+0.7
2,723,850	-		GFF2702	0.89	+0.3
2,723,853	+		GFF2702	0.89	+0.4
2,723,855	+		GFF2702	0.89	-1.1
2,723,855	+		GFF2702	0.89	+0.0
2,723,855	+		GFF2702	0.89	-0.9
2,723,855	+		GFF2702	0.89	-1.1
2,723,855	+		GFF2702	0.89	+0.1
2,723,858	-		GFF2702	0.90	-2.3
2,723,863	-				-1.6
2,723,863	-				-1.7
2,723,863	-				-1.4
2,723,863	-				+0.1
2,723,863	-				-0.7
2,723,886	-				+0.1
2,723,893	+				+0.1
2,723,893	+				-1.5
2,723,893	+				-0.1
2,723,893	+				+1.0
2,723,893	+				+0.3
2,723,897	+				-0.8
2,723,900	-				+1.4
2,723,900	-				+0.5
2,723,900	-				+0.1
2,723,901	-				+0.2
2,723,916	+				+0.4
2,723,922	+				+0.5
2,723,925	-				+0.5
2,723,926	+				+0.3
2,723,935	+				+1.3
2,723,937	+				-1.2
2,723,943	-				-0.7
2,723,946	+				-0.0
2,723,947	+				+0.7
2,723,947	+				-2.1
2,723,953	-				+0.1
2,723,956	+				-1.2
2,723,956	+				+0.5
2,723,959	-				-1.9
2,723,964	-				+0.0
2,723,965	+				+1.2
2,723,965	+				-1.5
2,723,965	+				+1.1
2,723,965	+				-1.2
2,723,967	+				-0.7
2,723,973	-				-0.9
2,723,973	-				+0.7
2,724,001	+				-0.3
2,724,001	+				-0.6
2,724,001	+				-0.4
2,724,001	+				+0.1
2,724,001	+				-1.7
2,724,001	+				+0.7
2,724,009	-				-1.9
2,724,009	-				-1.1
2,724,009	-				+0.5
2,724,009	-				-0.3
2,724,009	-				-0.6
2,724,009	-				-1.9
2,724,031	+				-1.2
2,724,040	-				-1.8
2,724,053	-				-1.2
2,724,062	-				-0.2
2,724,093	+				-1.0
2,724,116	+				+0.7
2,724,121	+				-2.5
2,724,121	+				+0.9
2,724,121	+				+0.9
2,724,121	+				-0.1
2,724,121	+				+0.2
2,724,121	+				-1.5
2,724,121	+				+1.0
2,724,121	+				+0.1
2,724,121	+				-0.8
2,724,121	+				+0.6
2,724,121	+				+0.9
2,724,121	+				-0.4
2,724,121	+				+0.4
2,724,121	+				-1.3
2,724,121	+				-0.7
2,724,121	+				+0.1
2,724,121	+				+0.3
2,724,121	+				+0.0
2,724,123	+				+0.5
2,724,124	-				+1.2
2,724,126	+				+0.6
2,724,129	-				-0.3
2,724,129	-				-0.4
2,724,129	-				+0.4
2,724,129	-				-0.6
2,724,129	-				+1.5
2,724,129	-				-0.6
2,724,129	-				-0.2
2,724,129	-				-0.2
2,724,129	-				-0.2
2,724,129	-				+1.2
2,724,131	+				+0.5
2,724,131	+				-1.0
2,724,131	+				-0.7
2,724,132	+				+0.1
2,724,134	-				+0.5
2,724,139	-				+0.5
2,724,139	-				+0.1
2,724,139	-				+0.2
2,724,139	-				-1.3
2,724,141	+				+0.2
2,724,149	-				+0.1
2,724,149	-				-1.3
2,724,164	+				+0.7
2,724,172	-				+0.7
2,724,174	+				+0.2
2,724,174	+				+1.0
2,724,174	+				+0.3
2,724,174	+				-1.8
2,724,174	+				+1.6
2,724,174	+				+0.4
2,724,174	+				-0.9
2,724,174	+				-0.3
2,724,178	+				-1.9
2,724,179	+				-0.2
2,724,179	+				-0.2
2,724,179	+				+1.2
2,724,182	-				-1.9
2,724,182	-				+0.1
2,724,182	-				-0.4
2,724,182	-				+1.1
2,724,182	-				+0.5
2,724,184	+				+0.1
2,724,186	-				+0.7
2,724,187	-				-0.7
2,724,187	-				+0.5
2,724,191	+				-0.2
2,724,196	+				-0.4
2,724,197	+				+1.7
2,724,197	-				+0.2
2,724,204	-				+0.2
2,724,204	-				+1.0
2,724,205	-				+0.2
2,724,205	-				+0.5
2,724,213	+				-0.3
2,724,213	+				-0.4
2,724,213	+				-0.7
2,724,213	+				-0.7
2,724,213	+				+0.5
2,724,221	+				+0.8
2,724,221	-				+0.1
2,724,221	-				-0.9
2,724,221	-				-0.6
2,724,221	-				-1.9
2,724,221	-				-0.1
2,724,221	-				-1.8
2,724,221	-				+0.5
2,724,232	+				+0.5
2,724,243	+				-2.4
2,724,248	+				+1.0
2,724,266	-				-1.3
2,724,266	-				-0.5
2,724,266	-				-0.1
2,724,268	+				+0.3
2,724,268	+				+0.7
2,724,272	-				-0.7
2,724,276	-				-0.1
2,724,284	-				-0.3
2,724,286	+				-1.3
2,724,286	+				-0.1
2,724,296	+				-2.1
2,724,296	+				-0.3
2,724,296	+				+1.2
2,724,301	+				+0.5
2,724,301	+				-0.3
2,724,304	-				+0.2
2,724,306	+				-1.0
2,724,308	+				-1.5
2,724,308	+				-0.6
2,724,308	+				-0.3
2,724,308	+				+1.2
2,724,308	+				+0.0
2,724,308	+				+0.1
2,724,308	+				-1.5
2,724,308	+				-0.9
2,724,309	-				+0.1
2,724,309	-				-0.6
2,724,316	-				-0.2
2,724,316	-				+0.5
2,724,316	-				-0.2
2,724,326	+				+0.4
2,724,326	+				-1.9
2,724,326	+				+0.3
2,724,326	+				-0.0
2,724,326	+				+1.1
2,724,326	+				+0.7
2,724,326	+				-0.6
2,724,326	+				-1.2
2,724,326	+				+0.3
2,724,326	+				+0.2
2,724,332	+				-0.2
2,724,334	-				-1.9
2,724,334	-				-0.6
2,724,334	-				+0.2
2,724,334	-				-0.7
2,724,337	+				+0.0
2,724,337	+				-0.8
2,724,339	-				-1.0
2,724,339	-				+0.0
2,724,339	-				-0.4
2,724,341	+				+0.4
2,724,345	+				+0.4
2,724,345	-				-0.4
2,724,345	-				+0.8
2,724,345	-				-0.3
2,724,360	-		GFF2703	0.11	-0.3
2,724,372	+		GFF2703	0.23	+0.1
2,724,372	+		GFF2703	0.23	+1.0
2,724,372	+		GFF2703	0.23	+0.8
2,724,372	+		GFF2703	0.23	-0.1
2,724,372	+		GFF2703	0.23	+0.1
2,724,379	+		GFF2703	0.29	-1.4
2,724,380	-		GFF2703	0.30	+0.7
2,724,399	+		GFF2703	0.49	-0.1
2,724,400	+		GFF2703	0.50	+0.9
2,724,408	-		GFF2703	0.58	-0.0
2,724,411	+		GFF2703	0.61	+0.9
2,724,412	+		GFF2703	0.62	-1.5
2,724,413	+		GFF2703	0.63	-0.3
2,724,413	+		GFF2703	0.63	+0.1
2,724,413	+		GFF2703	0.63	+1.0
2,724,420	-		GFF2703	0.70	-0.2
2,724,421	-		GFF2703	0.71	+1.3
2,724,421	-		GFF2703	0.71	+1.0
2,724,421	-		GFF2703	0.71	+0.2
2,724,421	-		GFF2703	0.71	+0.5
2,724,434	+		GFF2703	0.83	-0.7
2,724,434	+		GFF2703	0.83	-0.7
2,724,442	-				-0.7
2,724,442	-				-0.9
2,724,442	-				-0.8
2,724,442	-				-0.2
2,724,444	+				-1.6
2,724,458	+				-0.1
2,724,465	+				-0.5
2,724,468	-				-2.8
2,724,477	+				-1.9
2,724,477	+				-1.3
2,724,477	+				-0.6
2,724,477	+				+0.5
2,724,480	-				+0.5
2,724,485	-				-1.2
2,724,485	-				-0.3
2,724,485	-				-2.3
2,724,490	-				-2.3
2,724,511	-		GFF2704	0.13	+0.6
2,724,514	+		GFF2704	0.14	+2.0
2,724,514	+		GFF2704	0.14	-0.4
2,724,514	+		GFF2704	0.14	-1.3
2,724,514	+		GFF2704	0.14	-1.0
2,724,514	+		GFF2704	0.14	-1.0
2,724,514	+		GFF2704	0.14	+0.5
2,724,518	-		GFF2704	0.15	-0.2
2,724,520	+		GFF2704	0.16	-0.6
2,724,520	+		GFF2704	0.16	+1.6
2,724,520	+		GFF2704	0.16	-0.7
2,724,520	+		GFF2704	0.16	-1.0
2,724,520	+		GFF2704	0.16	-0.1
2,724,522	-		GFF2704	0.17	+0.1
2,724,522	-		GFF2704	0.17	+0.4
2,724,522	-		GFF2704	0.17	-1.9
2,724,522	-		GFF2704	0.17	-0.6
2,724,522	-		GFF2704	0.17	-2.5
2,724,522	-		GFF2704	0.17	-1.4
2,724,522	-		GFF2704	0.17	+0.1
2,724,523	-		GFF2704	0.17	-0.6
2,724,537	-		GFF2704	0.21	-0.1
2,724,541	-		GFF2704	0.22	+0.4
2,724,543	-		GFF2704	0.23	-1.8
2,724,559	-		GFF2704	0.28	+0.8
2,724,573	+		GFF2704	0.32	-2.4
2,724,573	+		GFF2704	0.32	+0.6
2,724,581	-		GFF2704	0.35	+0.0
2,724,582	+		GFF2704	0.35	-1.4
2,724,604	+		GFF2704	0.42	-1.5
2,724,604	+		GFF2704	0.42	-0.1
2,724,604	+		GFF2704	0.42	-0.4
2,724,604	+		GFF2704	0.42	+0.2
2,724,604	+		GFF2704	0.42	+0.8
2,724,604	+		GFF2704	0.42	-0.3
2,724,604	+		GFF2704	0.42	+0.4
2,724,604	+		GFF2704	0.42	+1.2
2,724,606	-		GFF2704	0.42	-0.6
2,724,606	-		GFF2704	0.42	-0.6
2,724,612	+		GFF2704	0.44	-1.2
2,724,612	+		GFF2704	0.44	+0.0
2,724,612	-		GFF2704	0.44	+0.4
2,724,612	-		GFF2704	0.44	-0.9
2,724,612	-		GFF2704	0.44	+0.5
2,724,617	+		GFF2704	0.46	-0.1
2,724,617	+		GFF2704	0.46	-1.7
2,724,617	+		GFF2704	0.46	+0.3
2,724,617	+		GFF2704	0.46	+1.3
2,724,617	+		GFF2704	0.46	-1.2
2,724,617	+		GFF2704	0.46	+0.1
2,724,617	+		GFF2704	0.46	+0.4
2,724,617	+		GFF2704	0.46	+0.8
2,724,617	+		GFF2704	0.46	-1.9
2,724,617	+		GFF2704	0.46	-0.2
2,724,620	-		GFF2704	0.46	-1.0
2,724,625	-		GFF2704	0.48	+0.1
2,724,625	-		GFF2704	0.48	+0.2
2,724,625	-		GFF2704	0.48	+0.6
2,724,625	-		GFF2704	0.48	-0.1
2,724,625	-		GFF2704	0.48	+0.1
2,724,625	-		GFF2704	0.48	-0.9
2,724,625	-		GFF2704	0.48	+0.4
2,724,627	-		GFF2704	0.49	+0.6
2,724,630	-		GFF2704	0.50	+0.2
2,724,634	+		GFF2704	0.51	-0.1
2,724,634	+		GFF2704	0.51	-0.5
2,724,642	-		GFF2704	0.53	-0.9
2,724,644	+		GFF2704	0.54	-0.8
2,724,646	+		GFF2704	0.54	+0.6
2,724,647	+		GFF2704	0.55	+0.4
2,724,647	+		GFF2704	0.55	-1.9
2,724,652	-		GFF2704	0.56	-0.7
2,724,652	-		GFF2704	0.56	-0.2
2,724,654	+		GFF2704	0.57	-1.0
2,724,654	+		GFF2704	0.57	-1.6
2,724,654	+		GFF2704	0.57	+0.6
2,724,654	+		GFF2704	0.57	-1.4
2,724,654	+		GFF2704	0.57	+0.4
2,724,654	+		GFF2704	0.57	-1.9
2,724,655	-		GFF2704	0.57	+0.7
2,724,662	-		GFF2704	0.59	+1.1
2,724,662	-		GFF2704	0.59	-0.1
2,724,662	-		GFF2704	0.59	+0.4
2,724,662	-		GFF2704	0.59	-0.2
2,724,662	-		GFF2704	0.59	+0.6
2,724,662	-		GFF2704	0.59	+0.5
2,724,662	-		GFF2704	0.59	+1.1
2,724,662	-		GFF2704	0.59	+1.3
2,724,662	-		GFF2704	0.59	-0.2
2,724,662	-		GFF2704	0.59	-0.4
2,724,662	-		GFF2704	0.59	-1.8
2,724,662	-		GFF2704	0.59	-1.3
2,724,675	+		GFF2704	0.63	+1.3
2,724,675	+		GFF2704	0.63	-0.3
2,724,675	+		GFF2704	0.63	+1.1
2,724,683	-		GFF2704	0.66	-0.8
2,724,683	-		GFF2704	0.66	-1.9
2,724,683	-		GFF2704	0.66	+0.4
2,724,685	+		GFF2704	0.66	+0.1
2,724,693	-		GFF2704	0.69	+0.2
2,724,712	+		GFF2704	0.75	-0.1
2,724,712	+		GFF2704	0.75	+0.1
2,724,712	+		GFF2704	0.75	-0.6
2,724,718	-		GFF2704	0.76	-2.5
2,724,718	-		GFF2704	0.76	-0.0
2,724,720	-		GFF2704	0.77	-0.9
2,724,720	-		GFF2704	0.77	+1.3
2,724,720	-		GFF2704	0.77	-0.8
2,724,731	+		GFF2704	0.80	-0.6
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2,724,739	-		GFF2704	0.83	-0.2
2,724,741	+		GFF2704	0.83	-0.5
2,724,746	+		GFF2704	0.85	+1.0
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2,724,747	+		GFF2704	0.85	-0.7
2,724,749	-		GFF2704	0.86	-0.4
2,724,755	-		GFF2704	0.88	+0.1
2,724,780	+				-1.8
2,724,808	+				-0.1
2,724,838	-				-0.5
2,724,852	+				-0.4
2,724,852	+				-1.1
2,724,852	+				-1.0
2,724,852	+				+0.5
2,724,860	-				-1.4
2,724,860	-				-0.7
2,724,860	-				+0.4
2,724,869	+				-1.5
2,724,869	+				-0.9
2,724,869	+				+0.3
2,724,869	+				+0.2
2,724,869	+				-0.7
2,724,877	-				+1.2
2,724,877	-				-0.6
2,724,877	-				-0.7
2,724,888	+				+0.2
2,724,893	+				-1.9
2,724,893	+				-0.4
2,724,901	-				+0.3
2,724,943	+				-2.2
2,724,957	+				-0.1
2,724,965	-				-1.5
2,724,968	-				-2.2
2,724,973	+				-0.1
2,724,973	+				-0.2
2,724,974	+				-1.0
2,724,979	+				-0.2
2,724,979	+				-0.2
2,724,979	+				+0.9
2,724,979	+				+0.7
2,724,981	-				+0.5
2,724,981	-				+0.2
2,724,981	-				+0.5
2,724,982	-				-0.4
2,724,982	-				+0.2
2,724,983	-				+0.9
2,724,991	-				-0.1
2,724,996	+				-2.8
2,725,004	-				+0.0
2,725,029	+		GFF2705	0.11	+0.1
2,725,037	-		GFF2705	0.11	-0.4
2,725,037	-		GFF2705	0.11	-0.8
2,725,045	+		GFF2705	0.12	-1.5
2,725,058	-		GFF2705	0.12	-1.9
2,725,059	+		GFF2705	0.13	-1.3
2,725,059	+		GFF2705	0.13	-0.5
2,725,068	-		GFF2705	0.13	-0.4
2,725,068	-		GFF2705	0.13	+1.1
2,725,068	-		GFF2705	0.13	-0.1
2,725,075	+		GFF2705	0.14	-0.4
2,725,082	+		GFF2705	0.14	+1.7
2,725,089	-		GFF2705	0.14	+0.3
2,725,097	+		GFF2705	0.15	-1.7
2,725,097	+		GFF2705	0.15	-0.4
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2,725,124	+		GFF2705	0.17	+0.2
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2,725,132	+		GFF2705	0.17	-0.5
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2,725,132	+		GFF2705	0.17	-0.3
2,725,132	+		GFF2705	0.17	-0.9
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2,725,133	+		GFF2705	0.17	-0.4
2,725,133	+		GFF2705	0.17	+1.2
2,725,133	+		GFF2705	0.17	-0.5
2,725,133	+		GFF2705	0.17	-0.1
2,725,133	+		GFF2705	0.17	+0.7
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2,725,141	-		GFF2705	0.18	-1.0
2,725,141	-		GFF2705	0.18	-0.6
2,725,141	-		GFF2705	0.18	+1.2
2,725,145	+		GFF2705	0.18	-2.2
2,725,148	+		GFF2705	0.18	-0.4
2,725,148	+		GFF2705	0.18	+0.3
2,725,148	+		GFF2705	0.18	+0.8
2,725,148	+		GFF2705	0.18	+0.2
2,725,148	+		GFF2705	0.18	+0.9
2,725,148	+		GFF2705	0.18	-0.3
2,725,148	+		GFF2705	0.18	-2.5
2,725,148	+		GFF2705	0.18	+0.9
2,725,148	+		GFF2705	0.18	-1.7
2,725,148	+		GFF2705	0.18	-1.3
2,725,148	+		GFF2705	0.18	-0.5
2,725,148	+		GFF2705	0.18	+0.4
2,725,148	+		GFF2705	0.18	+0.2
2,725,148	+		GFF2705	0.18	+0.4
2,725,148	+		GFF2705	0.18	-1.1
2,725,148	+		GFF2705	0.18	-0.0
2,725,148	-		GFF2705	0.18	+0.8
2,725,150	+		GFF2705	0.18	+0.1
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2,725,156	-		GFF2705	0.19	+0.2
2,725,156	-		GFF2705	0.19	-0.2
2,725,156	-		GFF2705	0.19	+1.6
2,725,156	-		GFF2705	0.19	-0.2
2,725,156	-		GFF2705	0.19	+0.4
2,725,156	-		GFF2705	0.19	+0.4
2,725,156	-		GFF2705	0.19	-0.7
2,725,156	-		GFF2705	0.19	-1.7
2,725,156	-		GFF2705	0.19	-1.9
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2,725,165	+		GFF2705	0.19	+0.1
2,725,165	+		GFF2705	0.19	+0.5
2,725,165	+		GFF2705	0.19	-2.0
2,725,165	+		GFF2705	0.19	+0.3
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2,725,171	+		GFF2705	0.19	+0.6
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2,725,173	-		GFF2705	0.20	-1.0
2,725,173	-		GFF2705	0.20	-1.3
2,725,173	-		GFF2705	0.20	-0.1
2,725,173	-		GFF2705	0.20	-0.0
2,725,179	-		GFF2705	0.20	-0.1
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2,725,200	-		GFF2705	0.21	+1.3
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2,725,234	+		GFF2705	0.23	-0.8
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2,725,242	-		GFF2705	0.24	-0.4
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2,725,257	+		GFF2705	0.25	-0.0
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2,725,280	-		GFF2705	0.26	-1.2
2,725,280	-		GFF2705	0.26	-1.4
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2,725,307	+		GFF2705	0.28	+0.4
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2,725,321	+		GFF2705	0.29	-2.4
2,725,321	+		GFF2705	0.29	+0.3
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2,725,329	-		GFF2705	0.29	-1.8
2,725,329	-		GFF2705	0.29	-0.6
2,725,329	-		GFF2705	0.29	-0.3
2,725,382	+		GFF2705	0.33	-0.9
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2,725,390	-		GFF2705	0.33	-0.6
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2,725,390	-		GFF2705	0.33	-0.5
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2,725,516	+		GFF2705	0.41	+0.6
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2,725,566	+		GFF2705	0.44	-0.1
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2,725,572	-		GFF2705	0.44	-0.5
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2,725,600	-		GFF2705	0.46	-1.7
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2,725,628	-		GFF2705	0.48	-0.7
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2,725,682	+		GFF2705	0.51	-0.2
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2,725,759	-		GFF2705	0.56	-1.9
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