Strain Fitness in Sphingobium sp. HT1-2 around GFF2701

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,720,347	-				+0.0
2,720,357	+				-0.7
2,720,357	+				+1.4
2,720,381	+				+0.2
2,720,389	+				+0.1
2,720,412	+				+0.7
2,720,413	+				+0.5
2,720,413	+				+0.6
2,720,413	+				+0.9
2,720,416	+				-0.4
2,720,416	-				-0.1
2,720,418	+				-0.2
2,720,418	+				+0.7
2,720,421	-				-0.1
2,720,421	-				-0.8
2,720,435	+				+0.9
2,720,435	+				-1.6
2,720,435	+				+0.6
2,720,440	+				-1.5
2,720,443	-				+0.5
2,720,443	-				+0.6
2,720,453	-				+0.2
2,720,465	+				+1.4
2,720,470	+				+1.0
2,720,503	+				+0.3
2,720,503	+				-0.6
2,720,503	+				-0.5
2,720,510	+		GFF2698	0.12	-0.5
2,720,510	+		GFF2698	0.12	+0.4
2,720,510	+		GFF2698	0.12	-0.9
2,720,510	+		GFF2698	0.12	-0.9
2,720,511	-		GFF2698	0.12	+0.2
2,720,515	+		GFF2698	0.14	+1.2
2,720,516	-		GFF2698	0.14	-0.2
2,720,518	-		GFF2698	0.15	-0.8
2,720,518	-		GFF2698	0.15	-1.0
2,720,518	-		GFF2698	0.15	+0.6
2,720,520	-		GFF2698	0.16	-0.3
2,720,528	-		GFF2698	0.19	-0.2
2,720,528	-		GFF2698	0.19	+0.1
2,720,570	+		GFF2698	0.37	-0.8
2,720,578	-		GFF2698	0.41	-0.4
2,720,578	-		GFF2698	0.41	+0.7
2,720,578	-		GFF2698	0.41	-0.2
2,720,637	+		GFF2698	0.65	+1.4
2,720,637	+		GFF2698	0.65	-2.2
2,720,637	+		GFF2698	0.65	+0.0
2,720,639	+		GFF2698	0.66	+1.0
2,720,645	-		GFF2698	0.69	-0.5
2,720,659	+		GFF2698	0.75	-0.8
2,720,666	-		GFF2698	0.78	+1.6
2,720,697	+				+0.6
2,720,697	+				+0.6
2,720,705	-				+0.9
2,720,705	-				-0.2
2,720,705	-				-0.1
2,720,721	+				-0.6
2,720,721	-				-0.7
2,720,721	-				-0.4
2,720,721	-				+0.7
2,720,721	-				-0.2
2,720,722	-				+0.8
2,720,746	+				+1.4
2,720,746	+				+0.9
2,720,757	+				-0.9
2,720,762	+				-0.9
2,720,787	-		GFF2699	0.15	-1.3
2,720,799	-		GFF2699	0.26	+1.1
2,720,810	+		GFF2699	0.35	+1.0
2,720,810	+		GFF2699	0.35	+0.6
2,720,810	+		GFF2699	0.35	+0.9
2,720,810	+		GFF2699	0.35	-0.8
2,720,810	+		GFF2699	0.35	-0.8
2,720,810	+		GFF2699	0.35	-0.1
2,720,810	+		GFF2699	0.35	+0.8
2,720,810	+		GFF2699	0.35	+1.0
2,720,810	+		GFF2699	0.35	+0.9
2,720,818	-		GFF2699	0.42	-0.5
2,720,818	-		GFF2699	0.42	+0.2
2,720,818	-		GFF2699	0.42	+0.1
2,720,818	-		GFF2699	0.42	+0.2
2,720,818	-		GFF2699	0.42	-1.5
2,720,875	-				+1.0
2,720,885	+				-1.7
2,720,899	-				+0.6
2,720,918	+				-1.5
2,720,920	-				+0.5
2,720,938	+				+0.4
2,720,945	+				-0.7
2,720,945	+				-0.3
2,720,953	-				-0.4
2,720,953	-				-1.5
2,721,029	-				-1.4
2,721,044	+				+0.2
2,721,044	+				-2.1
2,721,052	-				-0.1
2,721,057	-				-0.0
2,721,057	-				-0.1
2,721,080	+				-1.4
2,721,088	-				-1.4
2,721,117	-		GFF2700	0.16	-0.4
2,721,139	+		GFF2700	0.24	-1.8
2,721,139	+		GFF2700	0.24	+0.9
2,721,139	+		GFF2700	0.24	+0.2
2,721,142	-		GFF2700	0.25	+0.8
2,721,142	-		GFF2700	0.25	-0.1
2,721,147	-		GFF2700	0.27	+1.1
2,721,147	-		GFF2700	0.27	-0.0
2,721,164	-		GFF2700	0.33	-0.4
2,721,164	-		GFF2700	0.33	-0.7
2,721,175	+		GFF2700	0.37	-0.4
2,721,193	-		GFF2700	0.44	+0.2
2,721,194	+		GFF2700	0.44	+0.5
2,721,194	+		GFF2700	0.44	+1.5
2,721,204	+		GFF2700	0.48	+0.6
2,721,216	+		GFF2700	0.52	+1.6
2,721,221	-		GFF2700	0.54	-0.3
2,721,224	-		GFF2700	0.55	-0.4
2,721,231	+		GFF2700	0.58	+0.0
2,721,244	-		GFF2700	0.62	-0.0
2,721,249	+		GFF2700	0.64	-0.6
2,721,257	-		GFF2700	0.67	+0.2
2,721,265	-		GFF2700	0.70	+0.4
2,721,271	+		GFF2700	0.72	+0.1
2,721,294	+		GFF2700	0.80	-1.5
2,721,303	+		GFF2700	0.84	-0.4
2,721,304	+		GFF2700	0.84	-0.9
2,721,304	+		GFF2700	0.84	-1.2
2,721,304	+		GFF2700	0.84	+0.3
2,721,311	+		GFF2700	0.87	-1.4
2,721,312	-		GFF2700	0.87	-1.1
2,721,312	-		GFF2700	0.87	-0.1
2,721,312	-		GFF2700	0.87	+0.1
2,721,335	-				-1.3
2,721,338	+				-0.9
2,721,342	-				+0.9
2,721,352	+				+0.3
2,721,362	+				-0.0
2,721,367	+				-0.3
2,721,367	+				+0.6
2,721,372	+				+0.7
2,721,375	-				+1.1
2,721,375	-				+0.2
2,721,383	-				-1.8
2,721,393	+				+0.7
2,721,395	+				+0.1
2,721,403	-				-1.2
2,721,430	+				+0.3
2,721,446	+		GFF2701	0.11	-0.2
2,721,448	-		GFF2701	0.11	+2.6
2,721,452	-		GFF2701	0.11	+2.0
2,721,456	+		GFF2701	0.12	-1.1
2,721,464	-		GFF2701	0.13	-0.3
2,721,489	-		GFF2701	0.15	-1.2
2,721,491	+		GFF2701	0.15	-1.4
2,721,498	+		GFF2701	0.16	+1.4
2,721,498	+		GFF2701	0.16	-0.4
2,721,498	+		GFF2701	0.16	-0.9
2,721,499	-		GFF2701	0.16	-0.8
2,721,499	-		GFF2701	0.16	+1.0
2,721,499	-		GFF2701	0.16	-0.4
2,721,500	+		GFF2701	0.16	+0.1
2,721,506	-		GFF2701	0.17	-0.6
2,721,508	-		GFF2701	0.17	+0.6
2,721,528	-		GFF2701	0.19	-0.0
2,721,555	-		GFF2701	0.22	+0.4
2,721,569	-		GFF2701	0.24	+0.6
2,721,575	+		GFF2701	0.24	-1.6
2,721,575	+		GFF2701	0.24	+0.2
2,721,575	+		GFF2701	0.24	+0.4
2,721,575	+		GFF2701	0.24	+1.6
2,721,575	+		GFF2701	0.24	+0.1
2,721,575	+		GFF2701	0.24	+0.5
2,721,575	+		GFF2701	0.24	+0.5
2,721,575	+		GFF2701	0.24	-0.3
2,721,575	+		GFF2701	0.24	+0.4
2,721,575	+		GFF2701	0.24	+0.9
2,721,575	+		GFF2701	0.24	-1.7
2,721,575	+		GFF2701	0.24	+0.4
2,721,575	+		GFF2701	0.24	+0.4
2,721,575	+		GFF2701	0.24	-0.4
2,721,575	+		GFF2701	0.24	-0.9
2,721,575	+		GFF2701	0.24	+1.0
2,721,583	-		GFF2701	0.25	+0.4
2,721,583	-		GFF2701	0.25	+0.0
2,721,583	-		GFF2701	0.25	+1.1
2,721,583	-		GFF2701	0.25	+1.0
2,721,583	-		GFF2701	0.25	+0.6
2,721,583	-		GFF2701	0.25	+1.6
2,721,583	-		GFF2701	0.25	+0.2
2,721,583	-		GFF2701	0.25	+0.7
2,721,583	-		GFF2701	0.25	+0.9
2,721,583	-		GFF2701	0.25	+0.4
2,721,583	-		GFF2701	0.25	-0.7
2,721,583	-		GFF2701	0.25	+0.1
2,721,583	-		GFF2701	0.25	+1.7
2,721,583	-		GFF2701	0.25	+0.3
2,721,583	-		GFF2701	0.25	+0.2
2,721,599	+		GFF2701	0.27	-0.4
2,721,600	-		GFF2701	0.27	-0.6
2,721,635	+		GFF2701	0.31	+1.1
2,721,641	+		GFF2701	0.31	-1.2
2,721,673	+		GFF2701	0.35	+0.4
2,721,676	-		GFF2701	0.35	-0.0
2,721,676	-		GFF2701	0.35	+0.9
2,721,681	-		GFF2701	0.35	-0.6
2,721,704	-		GFF2701	0.38	+0.5
2,721,718	+		GFF2701	0.39	-1.7
2,721,718	+		GFF2701	0.39	+0.3
2,721,718	+		GFF2701	0.39	+0.2
2,721,726	-		GFF2701	0.40	+0.6
2,721,726	-		GFF2701	0.40	-0.4
2,721,749	+		GFF2701	0.43	+1.2
2,721,766	+		GFF2701	0.44	-0.4
2,721,778	+		GFF2701	0.46	-0.5
2,721,813	-		GFF2701	0.49	+0.1
2,721,813	-		GFF2701	0.49	-2.2
2,721,813	-		GFF2701	0.49	+0.1
2,721,825	+		GFF2701	0.51	+0.7
2,721,831	-		GFF2701	0.51	-1.5
2,721,831	-		GFF2701	0.51	+0.4
2,721,849	+		GFF2701	0.53	-0.1
2,721,849	+		GFF2701	0.53	+0.2
2,721,850	-		GFF2701	0.53	+0.1
2,721,860	+		GFF2701	0.54	+1.6
2,721,860	+		GFF2701	0.54	+0.6
2,721,860	+		GFF2701	0.54	-0.4
2,721,860	+		GFF2701	0.54	-0.7
2,721,861	+		GFF2701	0.54	+0.2
2,721,868	-		GFF2701	0.55	-0.1
2,721,868	-		GFF2701	0.55	-2.0
2,721,868	-		GFF2701	0.55	+0.2
2,721,875	+		GFF2701	0.56	+1.4
2,721,903	+		GFF2701	0.59	+0.5
2,721,904	-		GFF2701	0.59	-1.3
2,721,904	-		GFF2701	0.59	-0.7
2,721,908	+		GFF2701	0.59	+1.4
2,721,913	+		GFF2701	0.60	+0.6
2,721,921	-		GFF2701	0.61	-1.3
2,721,935	-		GFF2701	0.62	-0.6
2,721,940	-		GFF2701	0.63	+1.0
2,721,940	-		GFF2701	0.63	+0.7
2,721,950	+		GFF2701	0.64	+0.1
2,721,950	+		GFF2701	0.64	-0.7
2,721,950	+		GFF2701	0.64	-0.2
2,721,953	-		GFF2701	0.64	+0.2
2,721,958	-		GFF2701	0.65	-0.7
2,721,958	-		GFF2701	0.65	-0.2
2,721,958	-		GFF2701	0.65	+0.0
2,721,968	-		GFF2701	0.66	+0.2
2,721,975	+		GFF2701	0.66	-0.3
2,721,977	+		GFF2701	0.67	-0.8
2,721,983	-		GFF2701	0.67	+0.4
2,721,984	-		GFF2701	0.67	+0.3
2,721,985	-		GFF2701	0.67	+0.2
2,721,989	-		GFF2701	0.68	-0.2
2,721,994	-		GFF2701	0.68	+0.6
2,722,008	+		GFF2701	0.70	+1.0
2,722,029	+		GFF2701	0.72	+0.1
2,722,029	+		GFF2701	0.72	+0.2
2,722,029	+		GFF2701	0.72	+0.1
2,722,029	+		GFF2701	0.72	-0.5
2,722,029	+		GFF2701	0.72	+1.0
2,722,036	-		GFF2701	0.73	-1.4
2,722,036	-		GFF2701	0.73	+0.2
2,722,036	-		GFF2701	0.73	+0.2
2,722,037	-		GFF2701	0.73	+0.4
2,722,037	-		GFF2701	0.73	-1.5
2,722,037	-		GFF2701	0.73	-1.2
2,722,055	+		GFF2701	0.75	+0.9
2,722,069	+		GFF2701	0.76	+0.6
2,722,130	+		GFF2701	0.83	-0.2
2,722,137	+		GFF2701	0.83	-0.9
2,722,138	-		GFF2701	0.83	-1.2
2,722,142	+		GFF2701	0.84	+0.2
2,722,150	-		GFF2701	0.85	+0.3
2,722,153	+		GFF2701	0.85	+0.1
2,722,161	-		GFF2701	0.86	-0.1
2,722,164	+		GFF2701	0.86	-0.9
2,722,164	+		GFF2701	0.86	-1.4
2,722,167	+		GFF2701	0.87	+1.0
2,722,169	+		GFF2701	0.87	+1.3
2,722,169	+		GFF2701	0.87	-0.3
2,722,172	-		GFF2701	0.87	+0.1
2,722,177	+		GFF2701	0.88	-0.8
2,722,177	-		GFF2701	0.88	-1.7
2,722,177	-		GFF2701	0.88	+0.6
2,722,177	-		GFF2701	0.88	+0.6
2,722,202	-				+0.1
2,722,204	+				+0.9
2,722,209	+				-0.2
2,722,217	-				-2.7
2,722,245	+				+1.3
2,722,253	-				+0.3
2,722,256	+				+0.1
2,722,256	+				-0.3
2,722,256	+				+0.4
2,722,264	-				+1.5
2,722,264	-				+0.1
2,722,264	-				-1.5
2,722,264	-				+0.6
2,722,288	+				+1.1
2,722,336	+				-1.6
2,722,378	+				+0.2
2,722,386	-				+0.4
2,722,386	-				-0.4
2,722,387	-				+0.1
2,722,391	+				-0.4
2,722,399	-				+1.9
2,722,399	-				-0.2
2,722,399	-				+0.2
2,722,427	+				-1.6
2,722,427	+				-0.1
2,722,427	+				-0.1
2,722,436	+				-1.4
2,722,436	+				+0.9
2,722,436	+				-0.6
2,722,444	-				-2.0
2,722,444	-				-1.9
2,722,444	-				-1.2
2,722,444	-				-0.9
2,722,452	+				+0.4
2,722,462	-				+0.6
2,722,470	+				-0.8
2,722,543	+				+0.5
2,722,543	+				-2.4
2,722,543	+				+0.4
2,722,551	-				-0.1
2,722,551	-				+0.4
2,722,551	-				+0.9
2,722,551	-				-1.6
2,722,551	-				+0.4
2,722,551	-				+0.2
2,722,551	-				-0.4
2,722,551	-				-1.2
2,722,553	+				-1.8
2,722,590	+				-0.8
2,722,609	+				-0.0
2,722,617	-				-0.9
2,722,653	-				-1.0
2,722,667	+				-1.9
2,722,706	+				-2.3
2,722,708	+				+0.8
2,722,714	-		GFF2702	0.10	-1.4
2,722,714	-		GFF2702	0.10	-0.4
2,722,714	-		GFF2702	0.10	-1.3
2,722,714	-		GFF2702	0.10	+0.0
2,722,716	-		GFF2702	0.10	+0.3
2,722,754	-		GFF2702	0.13	-0.7
2,722,770	+		GFF2702	0.14	-2.2
2,722,778	-		GFF2702	0.15	+0.2
2,722,793	+		GFF2702	0.16	-1.7
2,722,793	+		GFF2702	0.16	+0.9
2,722,793	+		GFF2702	0.16	-1.8
2,722,795	-		GFF2702	0.16	-2.1
2,722,801	-		GFF2702	0.16	-0.0
2,722,827	+		GFF2702	0.18	+1.1
2,722,827	+		GFF2702	0.18	-0.6
2,722,827	+		GFF2702	0.18	+2.0
2,722,827	+		GFF2702	0.18	+0.9
2,722,827	+		GFF2702	0.18	-0.3
2,722,827	+		GFF2702	0.18	+0.2
2,722,827	+		GFF2702	0.18	-0.9
2,722,835	-		GFF2702	0.19	+0.5
2,722,835	-		GFF2702	0.19	+0.5
2,722,835	-		GFF2702	0.19	+0.5
2,722,835	-		GFF2702	0.19	+0.5
2,722,835	-		GFF2702	0.19	+0.4
2,722,835	-		GFF2702	0.19	-0.9
2,722,835	-		GFF2702	0.19	-2.4
2,722,841	+		GFF2702	0.19	+0.1
2,722,841	+		GFF2702	0.19	-1.9
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