Strain Fitness in Sphingobium sp. HT1-2 around GFF2694

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,715,612	-		GFF2693	0.34	-0.0
2,715,612	-		GFF2693	0.34	-0.8
2,715,618	+		GFF2693	0.34	-0.4
2,715,619	+		GFF2693	0.34	-0.2
2,715,624	+		GFF2693	0.35	+1.3
2,715,624	+		GFF2693	0.35	-2.9
2,715,627	-		GFF2693	0.35	-0.7
2,715,627	-		GFF2693	0.35	-0.4
2,715,632	-		GFF2693	0.35	+0.7
2,715,632	-		GFF2693	0.35	-0.5
2,715,632	-		GFF2693	0.35	-1.5
2,715,632	-		GFF2693	0.35	-0.4
2,715,632	-		GFF2693	0.35	-0.8
2,715,640	+		GFF2693	0.36	+0.7
2,715,645	+		GFF2693	0.36	-0.6
2,715,645	+		GFF2693	0.36	+0.2
2,715,645	+		GFF2693	0.36	-2.2
2,715,651	-		GFF2693	0.37	-1.7
2,715,653	-		GFF2693	0.37	+0.4
2,715,664	+		GFF2693	0.38	-1.6
2,715,672	+		GFF2693	0.38	-0.2
2,715,672	+		GFF2693	0.38	-0.4
2,715,672	+		GFF2693	0.38	+0.4
2,715,680	-		GFF2693	0.39	-0.9
2,715,684	+		GFF2693	0.39	-0.5
2,715,685	+		GFF2693	0.39	-0.8
2,715,690	+		GFF2693	0.39	-1.9
2,715,690	+		GFF2693	0.39	-0.5
2,715,693	-		GFF2693	0.40	-1.7
2,715,698	-		GFF2693	0.40	+1.1
2,715,713	-		GFF2693	0.41	-1.0
2,715,719	-		GFF2693	0.42	-1.6
2,715,732	+		GFF2693	0.43	+0.6
2,715,738	+		GFF2693	0.43	-1.4
2,715,739	-		GFF2693	0.43	-0.2
2,715,752	+		GFF2693	0.44	-1.9
2,715,752	+		GFF2693	0.44	-0.4
2,715,752	+		GFF2693	0.44	+0.0
2,715,752	+		GFF2693	0.44	-0.9
2,715,752	+		GFF2693	0.44	+0.0
2,715,752	+		GFF2693	0.44	+1.2
2,715,752	+		GFF2693	0.44	-0.9
2,715,752	+		GFF2693	0.44	+0.5
2,715,752	+		GFF2693	0.44	+0.1
2,715,757	+		GFF2693	0.44	+0.5
2,715,757	+		GFF2693	0.44	-0.7
2,715,758	+		GFF2693	0.45	+0.1
2,715,758	+		GFF2693	0.45	-1.5
2,715,758	+		GFF2693	0.45	+0.8
2,715,758	+		GFF2693	0.45	-1.2
2,715,758	+		GFF2693	0.45	+0.1
2,715,758	+		GFF2693	0.45	-0.2
2,715,760	-		GFF2693	0.45	-0.6
2,715,760	-		GFF2693	0.45	-1.2
2,715,760	-		GFF2693	0.45	-1.0
2,715,760	-		GFF2693	0.45	+0.7
2,715,760	-		GFF2693	0.45	-1.1
2,715,763	+		GFF2693	0.45	-0.9
2,715,766	-		GFF2693	0.45	+1.6
2,715,766	-		GFF2693	0.45	+1.5
2,715,766	-		GFF2693	0.45	-2.1
2,715,795	-		GFF2693	0.47	-2.1
2,715,844	-		GFF2693	0.51	+0.7
2,715,851	+		GFF2693	0.51	+0.5
2,715,851	+		GFF2693	0.51	-0.4
2,715,851	+		GFF2693	0.51	-2.2
2,715,851	+		GFF2693	0.51	+0.1
2,715,851	+		GFF2693	0.51	-1.7
2,715,857	-		GFF2693	0.52	-0.1
2,715,859	-		GFF2693	0.52	+0.4
2,715,873	-		GFF2693	0.53	+0.9
2,715,907	+		GFF2693	0.56	+0.4
2,715,914	+		GFF2693	0.56	-0.6
2,715,915	-		GFF2693	0.56	-2.2
2,715,917	+		GFF2693	0.56	+0.1
2,715,917	+		GFF2693	0.56	-0.8
2,715,917	+		GFF2693	0.56	-0.4
2,715,917	+		GFF2693	0.56	-1.7
2,715,917	+		GFF2693	0.56	-0.3
2,715,917	+		GFF2693	0.56	-0.6
2,715,917	+		GFF2693	0.56	+0.9
2,715,922	-		GFF2693	0.57	-0.6
2,715,924	-		GFF2693	0.57	-1.7
2,715,924	-		GFF2693	0.57	-0.5
2,715,925	-		GFF2693	0.57	-1.9
2,715,925	-		GFF2693	0.57	+0.9
2,715,925	-		GFF2693	0.57	+0.4
2,715,925	-		GFF2693	0.57	+1.1
2,715,925	-		GFF2693	0.57	+0.8
2,715,925	-		GFF2693	0.57	-2.4
2,715,925	-		GFF2693	0.57	-0.4
2,715,932	+		GFF2693	0.58	+1.1
2,715,936	+		GFF2693	0.58	-0.1
2,715,943	+		GFF2693	0.58	-0.6
2,715,944	-		GFF2693	0.58	+0.1
2,715,944	-		GFF2693	0.58	+0.2
2,715,951	-		GFF2693	0.59	-0.8
2,715,953	+		GFF2693	0.59	+0.0
2,715,961	-		GFF2693	0.60	+0.3
2,715,961	-		GFF2693	0.60	+0.9
2,715,961	-		GFF2693	0.60	-1.4
2,715,971	+		GFF2693	0.60	-0.2
2,715,988	+		GFF2693	0.62	-0.8
2,715,995	+		GFF2693	0.62	-2.4
2,715,995	+		GFF2693	0.62	+1.4
2,716,011	+		GFF2693	0.63	+0.1
2,716,011	+		GFF2693	0.63	+0.4
2,716,011	+		GFF2693	0.63	-0.8
2,716,019	-		GFF2693	0.64	-2.5
2,716,019	-		GFF2693	0.64	-0.4
2,716,023	+		GFF2693	0.64	+0.0
2,716,040	+		GFF2693	0.66	+0.0
2,716,049	-		GFF2693	0.66	-2.4
2,716,050	+		GFF2693	0.66	+0.8
2,716,066	+		GFF2693	0.68	-0.9
2,716,074	-		GFF2693	0.68	+0.2
2,716,080	+		GFF2693	0.69	+0.4
2,716,094	+		GFF2693	0.70	+0.8
2,716,094	+		GFF2693	0.70	+0.4
2,716,094	+		GFF2693	0.70	-0.4
2,716,102	-		GFF2693	0.70	+0.4
2,716,102	-		GFF2693	0.70	-0.4
2,716,102	-		GFF2693	0.70	+0.1
2,716,102	-		GFF2693	0.70	+0.2
2,716,102	-		GFF2693	0.70	+0.1
2,716,102	-		GFF2693	0.70	-0.0
2,716,102	-		GFF2693	0.70	-0.4
2,716,102	-		GFF2693	0.70	+0.7
2,716,112	+		GFF2693	0.71	+2.0
2,716,139	+		GFF2693	0.73	+0.5
2,716,139	+		GFF2693	0.73	-0.5
2,716,139	+		GFF2693	0.73	-0.1
2,716,158	-		GFF2693	0.74	-0.8
2,716,158	-		GFF2693	0.74	-0.2
2,716,173	-		GFF2693	0.76	+0.4
2,716,185	+		GFF2693	0.76	-0.2
2,716,185	+		GFF2693	0.76	-0.0
2,716,185	+		GFF2693	0.76	-1.5
2,716,186	-		GFF2693	0.77	+0.2
2,716,193	-		GFF2693	0.77	-1.5
2,716,193	-		GFF2693	0.77	-0.8
2,716,198	-		GFF2693	0.77	+0.8
2,716,200	-		GFF2693	0.78	+0.6
2,716,238	-		GFF2693	0.80	+0.4
2,716,258	-		GFF2693	0.82	-0.8
2,716,260	-		GFF2693	0.82	-0.6
2,716,261	-		GFF2693	0.82	-2.2
2,716,272	+		GFF2693	0.83	-0.9
2,716,299	+		GFF2693	0.85	+0.9
2,716,319	+		GFF2693	0.86	+0.7
2,716,319	+		GFF2693	0.86	-0.8
2,716,319	+		GFF2693	0.86	+0.4
2,716,319	+		GFF2693	0.86	-1.8
2,716,319	+		GFF2693	0.86	-2.1
2,716,321	-		GFF2693	0.87	-2.1
2,716,354	+		GFF2693	0.89	+0.6
2,716,354	+		GFF2693	0.89	+0.5
2,716,354	+		GFF2693	0.89	+0.6
2,716,354	+		GFF2693	0.89	-0.0
2,716,354	+		GFF2693	0.89	+0.1
2,716,356	+		GFF2693	0.89	-0.9
2,716,356	+		GFF2693	0.89	+0.8
2,716,356	+		GFF2693	0.89	-2.5
2,716,356	+		GFF2693	0.89	-0.2
2,716,356	+		GFF2693	0.89	-0.9
2,716,356	+		GFF2693	0.89	-0.7
2,716,356	+		GFF2693	0.89	-0.2
2,716,356	+		GFF2693	0.89	+0.6
2,716,356	+		GFF2693	0.89	+0.7
2,716,356	+		GFF2693	0.89	-0.5
2,716,356	+		GFF2693	0.89	-0.8
2,716,356	+		GFF2693	0.89	+0.7
2,716,356	+		GFF2693	0.89	-0.4
2,716,356	+		GFF2693	0.89	-1.4
2,716,356	+		GFF2693	0.89	+0.8
2,716,356	+		GFF2693	0.89	-0.8
2,716,356	+		GFF2693	0.89	+0.6
2,716,356	+		GFF2693	0.89	-1.1
2,716,356	+		GFF2693	0.89	-0.8
2,716,356	+		GFF2693	0.89	-1.0
2,716,356	+		GFF2693	0.89	-2.0
2,716,361	+		GFF2693	0.90	-0.2
2,716,362	-		GFF2693	0.90	+0.9
2,716,362	-		GFF2693	0.90	+1.0
2,716,362	-		GFF2693	0.90	-1.3
2,716,362	-		GFF2693	0.90	+1.4
2,716,362	-		GFF2693	0.90	-1.4
2,716,362	-		GFF2693	0.90	+1.1
2,716,362	-		GFF2693	0.90	-1.5
2,716,364	-		GFF2693	0.90	-1.2
2,716,364	-		GFF2693	0.90	+0.3
2,716,364	-		GFF2693	0.90	-0.6
2,716,364	-		GFF2693	0.90	+0.7
2,716,364	-		GFF2693	0.90	-1.9
2,716,364	-		GFF2693	0.90	-0.4
2,716,364	-		GFF2693	0.90	+1.7
2,716,364	-		GFF2693	0.90	+0.5
2,716,364	-		GFF2693	0.90	+0.6
2,716,364	-		GFF2693	0.90	-0.2
2,716,364	-		GFF2693	0.90	+0.4
2,716,364	-		GFF2693	0.90	-0.7
2,716,364	-		GFF2693	0.90	-1.2
2,716,364	-		GFF2693	0.90	+1.1
2,716,364	-		GFF2693	0.90	-1.1
2,716,364	-		GFF2693	0.90	+0.8
2,716,364	-		GFF2693	0.90	+0.9
2,716,388	+				+0.8
2,716,388	+				-0.4
2,716,396	-				-0.1
2,716,396	-				-0.2
2,716,397	-				+0.2
2,716,403	+				-0.4
2,716,403	-				-0.5
2,716,414	+				-0.1
2,716,414	+				-0.7
2,716,414	+				+0.1
2,716,414	+				+0.5
2,716,414	+				-1.0
2,716,414	+				+0.2
2,716,414	+				+0.2
2,716,414	+				-0.9
2,716,414	+				+0.3
2,716,414	+				+1.2
2,716,414	+				+0.1
2,716,414	+				-0.4
2,716,422	-				+0.3
2,716,422	-				-0.2
2,716,422	-				+0.7
2,716,422	-				-0.1
2,716,422	-				+0.3
2,716,424	+				+0.5
2,716,429	+				+1.1
2,716,429	+				-0.6
2,716,432	-				+0.4
2,716,432	-				+1.2
2,716,432	-				-1.3
2,716,437	-				+0.2
2,716,437	-				-0.5
2,716,437	-				-0.5
2,716,441	+				+0.7
2,716,441	+				-0.7
2,716,449	-				+0.4
2,716,455	-				-3.0
2,716,462	+				-0.5
2,716,463	+				+0.6
2,716,471	-				+0.4
2,716,476	-				+0.6
2,716,490	-				+0.1
2,716,497	-				+0.3
2,716,547	+				-1.5
2,716,554	-				-0.1
2,716,574	+				-1.1
2,716,584	+				+0.6
2,716,668	+		GFF2694	0.23	-1.6
2,716,670	+		GFF2694	0.24	-1.2
2,716,670	-		GFF2694	0.24	-2.5
2,716,673	+		GFF2694	0.25	-0.5
2,716,681	+		GFF2694	0.28	+0.4
2,716,681	-		GFF2694	0.28	-1.7
2,716,681	-		GFF2694	0.28	+0.6
2,716,722	+		GFF2694	0.43	-1.9
2,716,755	-		GFF2694	0.56	-0.9
2,716,757	-		GFF2694	0.56	-0.2
2,716,770	+		GFF2694	0.61	-1.4
2,716,783	-		GFF2694	0.66	-0.9
2,716,798	+		GFF2694	0.71	+1.0
2,716,806	-		GFF2694	0.74	-0.6
2,716,809	+		GFF2694	0.76	-0.0
2,716,809	+		GFF2694	0.76	+0.6
2,716,809	+		GFF2694	0.76	-0.4
2,716,809	+		GFF2694	0.76	-0.0
2,716,809	+		GFF2694	0.76	-0.8
2,716,809	+		GFF2694	0.76	+0.6
2,716,809	+		GFF2694	0.76	-0.8
2,716,809	+		GFF2694	0.76	-1.9
2,716,809	+		GFF2694	0.76	+0.2
2,716,809	+		GFF2694	0.76	+0.3
2,716,817	-		GFF2694	0.79	-0.4
2,716,817	-		GFF2694	0.79	-0.7
2,716,817	-		GFF2694	0.79	-0.9
2,716,817	-		GFF2694	0.79	-0.7
2,716,817	-		GFF2694	0.79	-0.6
2,716,817	-		GFF2694	0.79	+0.4
2,716,827	-		GFF2694	0.82	-1.4
2,716,829	+		GFF2694	0.83	-0.4
2,716,837	-		GFF2694	0.86	-1.9
2,716,837	-		GFF2694	0.86	+0.4
2,716,847	+		GFF2694	0.90	+0.9
2,716,877	-				-0.2
2,716,914	+				-1.6
2,716,936	+				+0.5
2,716,941	+				-0.4
2,716,954	+				-2.2
2,716,954	+				+0.1
2,716,954	+				+0.1
2,716,962	-				-1.9
2,716,966	-				-0.5
2,716,968	+				-0.4
2,716,976	-				-1.6
2,716,982	+				+0.8
2,716,984	-				+0.6
2,716,990	-				-0.9
2,717,007	-				+1.6
2,717,041	+				+0.2
2,717,049	-				-0.1
2,717,053	-				+0.2
2,717,065	+				-1.0
2,717,069	+				-0.4
2,717,069	+				-1.4
2,717,069	+				-1.2
2,717,069	+				+1.3
2,717,069	+				-1.0
2,717,077	-				-0.4
2,717,077	-				-0.4
2,717,077	-				-2.1
2,717,077	-				+0.4
2,717,077	-				+0.3
2,717,077	-				+1.0
2,717,091	-				-1.1
2,717,100	+				+1.1
2,717,117	+				-0.4
2,717,132	+				+0.6
2,717,132	+				+0.1
2,717,132	+				-0.2
2,717,133	-				+0.4
2,717,133	-				-0.4
2,717,140	-				+0.9
2,717,140	-				+0.2
2,717,140	-				+1.5
2,717,142	+				-2.3
2,717,156	+				-1.3
2,717,158	+				+0.1
2,717,166	+				-0.0
2,717,166	-				-2.2
2,717,166	-				+0.3
2,717,166	-				+0.4
2,717,171	+				+0.0
2,717,179	-				+0.9
2,717,179	-				+1.5
2,717,179	-				+0.3
2,717,184	+				+0.0
2,717,185	+				-0.6
2,717,185	+				+0.2
2,717,192	-				+0.1
2,717,193	+				+0.4
2,717,203	+				+1.5
2,717,208	+				+1.6
2,717,217	+				-1.4
2,717,225	-				-1.5
2,717,233	-				+1.2
2,717,246	+				-1.2
2,717,261	-				+0.4
2,717,263	+				+0.1
2,717,269	-				-0.5
2,717,271	-				-0.5
2,717,318	+				+0.6
2,717,318	+				-0.3
2,717,318	+				+0.9
2,717,318	+				-0.7
2,717,319	+				+0.0
2,717,326	-				-0.2
2,717,326	-				-1.4
2,717,326	-				+0.0
2,717,326	-				-1.3
2,717,336	+				+1.4
2,717,336	+				+0.4
2,717,336	+				-1.0
2,717,336	+				-1.2
2,717,350	+				+1.2
2,717,350	+				-1.3
2,717,369	-				+0.4
2,717,369	-				-0.5
2,717,372	-				+0.6
2,717,413	-				-0.0
2,717,424	-				+0.2
2,717,449	+				+0.8
2,717,461	-				-0.3
2,717,506	+		GFF2695	0.11	-1.7
2,717,542	-		GFF2695	0.13	-0.8
2,717,552	+		GFF2695	0.14	+1.3
2,717,553	+		GFF2695	0.14	-0.4
2,717,567	+		GFF2695	0.15	+0.3
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