Strain Fitness in Sphingobium sp. HT1-2 around GFF2687

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,706,264	+				+0.1
2,706,272	-				-0.3
2,706,299	+				+0.4
2,706,304	+				-1.1
2,706,304	+				-0.8
2,706,315	+				-0.5
2,706,315	+				-0.5
2,706,315	+				-0.1
2,706,316	+				+1.2
2,706,317	-				+0.3
2,706,317	-				-0.6
2,706,323	-				+0.1
2,706,323	-				+1.0
2,706,324	-				-0.3
2,706,346	-		GFF2685	0.12	+0.5
2,706,350	+		GFF2685	0.13	+0.6
2,706,350	+		GFF2685	0.13	+1.3
2,706,360	+		GFF2685	0.16	+0.8
2,706,360	+		GFF2685	0.16	+0.9
2,706,360	+		GFF2685	0.16	-0.2
2,706,360	+		GFF2685	0.16	+0.2
2,706,360	+		GFF2685	0.16	+0.6
2,706,360	+		GFF2685	0.16	-1.2
2,706,362	+		GFF2685	0.17	-0.6
2,706,362	+		GFF2685	0.17	+1.3
2,706,368	-		GFF2685	0.19	+1.1
2,706,368	-		GFF2685	0.19	-0.8
2,706,368	-		GFF2685	0.19	+0.1
2,706,368	-		GFF2685	0.19	-0.5
2,706,368	-		GFF2685	0.19	+1.4
2,706,368	-		GFF2685	0.19	+0.2
2,706,368	-		GFF2685	0.19	-0.3
2,706,370	+		GFF2685	0.19	-0.0
2,706,370	-		GFF2685	0.19	+0.2
2,706,404	+		GFF2685	0.30	+0.7
2,706,404	+		GFF2685	0.30	-0.3
2,706,408	+		GFF2685	0.31	-0.7
2,706,412	-		GFF2685	0.32	+0.3
2,706,421	-		GFF2685	0.35	+0.1
2,706,425	+		GFF2685	0.36	-1.6
2,706,427	+		GFF2685	0.37	-0.3
2,706,428	-		GFF2685	0.37	-0.6
2,706,430	+		GFF2685	0.38	+0.2
2,706,433	-		GFF2685	0.39	+0.4
2,706,435	+		GFF2685	0.39	-1.7
2,706,443	-		GFF2685	0.42	-0.3
2,706,463	+		GFF2685	0.48	-2.1
2,706,463	+		GFF2685	0.48	-0.2
2,706,464	-		GFF2685	0.48	-0.1
2,706,471	-		GFF2685	0.50	-0.4
2,706,471	-		GFF2685	0.50	-1.2
2,706,471	-		GFF2685	0.50	+0.6
2,706,482	-		GFF2685	0.54	+0.5
2,706,483	+		GFF2685	0.54	-0.2
2,706,491	-		GFF2685	0.56	-1.0
2,706,491	-		GFF2685	0.56	-1.9
2,706,497	-		GFF2685	0.58	+1.0
2,706,509	-		GFF2685	0.62	-0.8
2,706,510	+		GFF2685	0.62	-0.1
2,706,510	+		GFF2685	0.62	-0.1
2,706,511	-		GFF2685	0.63	-1.9
2,706,518	-		GFF2685	0.65	+1.5
2,706,518	-		GFF2685	0.65	+1.7
2,706,527	+		GFF2685	0.68	-0.1
2,706,527	+		GFF2685	0.68	+0.9
2,706,527	+		GFF2685	0.68	-1.4
2,706,527	+		GFF2685	0.68	+0.8
2,706,527	+		GFF2685	0.68	+0.9
2,706,535	-		GFF2685	0.70	+0.2
2,706,535	-		GFF2685	0.70	+0.3
2,706,537	+		GFF2685	0.71	-0.4
2,706,537	+		GFF2685	0.71	-0.4
2,706,537	+		GFF2685	0.71	-2.4
2,706,540	-		GFF2685	0.72	+0.2
2,706,542	+		GFF2685	0.72	-1.2
2,706,545	-		GFF2685	0.73	+0.4
2,706,545	-		GFF2685	0.73	-0.5
2,706,545	-		GFF2685	0.73	-0.4
2,706,561	+		GFF2685	0.78	-1.9
2,706,584	+		GFF2685	0.85	-1.2
2,706,586	-		GFF2685	0.86	-0.4
2,706,592	-		GFF2685	0.88	+1.2
2,706,648	+				-0.1
2,706,648	+				-0.6
2,706,660	+				-0.8
2,706,660	+				-2.4
2,706,660	+				+0.6
2,706,660	+				+0.7
2,706,663	-				-0.3
2,706,665	+				-2.5
2,706,665	+				-0.8
2,706,665	+				+1.0
2,706,665	+				-1.2
2,706,665	+				+0.4
2,706,665	+				+0.8
2,706,665	+				+0.8
2,706,668	-				+0.5
2,706,668	-				+1.2
2,706,668	-				-1.1
2,706,673	-				-0.1
2,706,673	-				+0.7
2,706,673	-				-0.4
2,706,673	-				-2.4
2,706,673	-				+0.1
2,706,700	+				-1.4
2,706,710	+				+1.0
2,706,710	+				+1.2
2,706,710	+				+1.2
2,706,713	+				-1.4
2,706,718	-				+0.8
2,706,729	+		GFF2686	0.11	-1.6
2,706,731	-		GFF2686	0.12	+0.5
2,706,736	-		GFF2686	0.13	+0.6
2,706,739	+		GFF2686	0.13	+0.6
2,706,743	+		GFF2686	0.14	-0.2
2,706,752	-		GFF2686	0.15	+1.0
2,706,761	+		GFF2686	0.17	+0.0
2,706,764	+		GFF2686	0.17	+0.6
2,706,767	-		GFF2686	0.18	+0.0
2,706,768	-		GFF2686	0.18	+0.1
2,706,769	-		GFF2686	0.18	-0.4
2,706,782	-		GFF2686	0.20	+0.3
2,706,788	-		GFF2686	0.21	+0.4
2,706,793	-		GFF2686	0.22	-0.5
2,706,798	+		GFF2686	0.23	+0.1
2,706,813	+		GFF2686	0.26	-0.8
2,706,816	-		GFF2686	0.26	+0.6
2,706,821	+		GFF2686	0.27	+0.9
2,706,835	-		GFF2686	0.29	-0.0
2,706,836	-		GFF2686	0.29	+0.2
2,706,845	-		GFF2686	0.31	-0.2
2,706,894	+		GFF2686	0.39	+0.2
2,706,894	+		GFF2686	0.39	+0.2
2,706,902	-		GFF2686	0.41	+0.2
2,706,907	-		GFF2686	0.41	+1.2
2,706,927	+		GFF2686	0.45	+0.6
2,706,935	-		GFF2686	0.46	+0.9
2,706,945	+		GFF2686	0.48	-0.5
2,706,953	-		GFF2686	0.49	+0.4
2,706,958	+		GFF2686	0.50	-0.0
2,706,971	+		GFF2686	0.52	-2.4
2,706,977	-		GFF2686	0.53	+0.5
2,706,978	+		GFF2686	0.53	-2.5
2,706,986	-		GFF2686	0.55	+1.1
2,706,986	-		GFF2686	0.55	+1.0
2,706,988	+		GFF2686	0.55	+0.4
2,706,991	-		GFF2686	0.56	+0.2
2,706,996	-		GFF2686	0.57	-0.7
2,707,017	+		GFF2686	0.60	+0.7
2,707,020	-		GFF2686	0.61	+1.6
2,707,020	-		GFF2686	0.61	-0.2
2,707,020	-		GFF2686	0.61	-0.4
2,707,022	+		GFF2686	0.61	-0.8
2,707,025	-		GFF2686	0.61	+0.9
2,707,025	-		GFF2686	0.61	-1.4
2,707,025	-		GFF2686	0.61	-0.3
2,707,044	+		GFF2686	0.65	-0.8
2,707,052	+		GFF2686	0.66	-0.2
2,707,056	+		GFF2686	0.67	-0.5
2,707,062	+		GFF2686	0.68	-1.6
2,707,062	+		GFF2686	0.68	+1.6
2,707,064	-		GFF2686	0.68	-0.5
2,707,064	-		GFF2686	0.68	-1.7
2,707,074	-		GFF2686	0.70	-1.6
2,707,080	+		GFF2686	0.71	+1.1
2,707,084	+		GFF2686	0.71	-1.4
2,707,084	+		GFF2686	0.71	-2.5
2,707,088	+		GFF2686	0.72	-0.4
2,707,088	-		GFF2686	0.72	-0.8
2,707,090	+		GFF2686	0.72	+1.1
2,707,094	-		GFF2686	0.73	+1.1
2,707,111	-		GFF2686	0.76	-0.8
2,707,146	+		GFF2686	0.82	+0.1
2,707,154	-		GFF2686	0.83	+0.4
2,707,154	-		GFF2686	0.83	+0.6
2,707,154	-		GFF2686	0.83	+0.7
2,707,154	-		GFF2686	0.83	-0.8
2,707,160	+		GFF2686	0.84	+0.1
2,707,160	+		GFF2686	0.84	+0.3
2,707,160	-		GFF2686	0.84	-0.7
2,707,165	-		GFF2686	0.85	-1.3
2,707,168	-		GFF2686	0.86	-1.6
2,707,178	+		GFF2686	0.87	+0.3
2,707,178	+		GFF2686	0.87	-1.9
2,707,181	+		GFF2686	0.88	-0.6
2,707,186	+		GFF2686	0.89	-0.6
2,707,186	+		GFF2686	0.89	-2.2
2,707,186	+		GFF2686	0.89	-1.8
2,707,186	+		GFF2686	0.89	-0.9
2,707,186	+		GFF2686	0.89	-0.9
2,707,194	-				-2.0
2,707,194	-				+1.1
2,707,194	-				+0.4
2,707,194	-				-1.0
2,707,194	-				+1.2
2,707,204	+				-0.2
2,707,204	+				+0.4
2,707,204	+				+0.2
2,707,204	+				-0.9
2,707,204	+				+0.5
2,707,204	+				-0.6
2,707,204	+				+0.9
2,707,204	+				-0.0
2,707,204	+				+0.2
2,707,209	+				-1.6
2,707,209	+				-0.9
2,707,209	+				-1.8
2,707,210	+				-0.6
2,707,211	+				-1.4
2,707,212	-				-0.4
2,707,212	-				-0.1
2,707,212	-				-0.6
2,707,212	-				+1.0
2,707,212	-				-2.0
2,707,212	-				-1.7
2,707,212	-				-0.4
2,707,212	-				+0.4
2,707,217	-				-0.9
2,707,233	+				-0.9
2,707,255	-				-0.0
2,707,255	-				+0.9
2,707,258	-				+1.5
2,707,266	+				-1.5
2,707,267	+				-0.6
2,707,267	+				-0.7
2,707,268	-				+0.7
2,707,270	-				+0.5
2,707,275	-				+0.8
2,707,275	-				+0.6
2,707,275	-				+0.1
2,707,312	+				-0.6
2,707,320	-		GFF2687	0.11	-0.2
2,707,320	-		GFF2687	0.11	+0.4
2,707,323	-		GFF2687	0.11	-0.8
2,707,324	-		GFF2687	0.11	-1.7
2,707,331	+		GFF2687	0.12	-1.0
2,707,394	-		GFF2687	0.22	+0.1
2,707,406	+		GFF2687	0.24	-3.0
2,707,408	-		GFF2687	0.24	-1.5
2,707,428	+		GFF2687	0.27	+0.2
2,707,444	-		GFF2687	0.30	+0.4
2,707,450	+		GFF2687	0.30	+0.2
2,707,458	+		GFF2687	0.32	-0.7
2,707,458	-		GFF2687	0.32	+0.3
2,707,460	+		GFF2687	0.32	+0.5
2,707,468	-		GFF2687	0.33	-1.7
2,707,468	-		GFF2687	0.33	+0.7
2,707,485	-		GFF2687	0.36	+0.1
2,707,505	-		GFF2687	0.39	-1.9
2,707,505	-		GFF2687	0.39	-0.1
2,707,506	-		GFF2687	0.39	+1.5
2,707,522	+		GFF2687	0.41	-0.4
2,707,522	+		GFF2687	0.41	-0.6
2,707,530	-		GFF2687	0.43	-0.2
2,707,554	+		GFF2687	0.46	-0.1
2,707,556	-		GFF2687	0.47	-0.2
2,707,567	-		GFF2687	0.48	+0.1
2,707,585	+		GFF2687	0.51	+0.9
2,707,605	-		GFF2687	0.54	-0.1
2,707,637	+		GFF2687	0.59	-2.5
2,707,639	-		GFF2687	0.59	+0.2
2,707,654	+		GFF2687	0.61	+1.4
2,707,659	+		GFF2687	0.62	-0.1
2,707,662	-		GFF2687	0.63	-0.1
2,707,669	+		GFF2687	0.64	-0.9
2,707,676	+		GFF2687	0.65	+0.3
2,707,676	+		GFF2687	0.65	+0.3
2,707,676	+		GFF2687	0.65	-0.9
2,707,676	+		GFF2687	0.65	-1.0
2,707,677	-		GFF2687	0.65	+0.6
2,707,681	+		GFF2687	0.65	+0.4
2,707,682	-		GFF2687	0.66	+0.6
2,707,691	+		GFF2687	0.67	+0.6
2,707,699	-		GFF2687	0.68	-0.4
2,707,699	-		GFF2687	0.68	-1.6
2,707,701	+		GFF2687	0.68	-1.2
2,707,709	-		GFF2687	0.70	-1.2
2,707,756	-		GFF2687	0.77	+0.1
2,707,791	+		GFF2687	0.82	-2.6
2,707,802	+		GFF2687	0.84	-0.3
2,707,827	-		GFF2687	0.88	+0.0
2,707,828	-		GFF2687	0.88	+0.3
2,707,843	+				+0.6
2,707,876	+				+0.4
2,707,877	+				-1.5
2,707,884	-				+0.4
2,707,885	-				-1.5
2,707,890	-				-0.4
2,707,903	+				-0.1
2,707,903	+				-0.7
2,707,910	+				+0.5
2,707,911	-				+0.6
2,707,918	-				-0.7
2,707,918	-				-1.1
2,707,918	-				+0.1
2,707,918	-				+0.1
2,707,918	-				+0.1
2,707,920	+				-0.6
2,707,921	-				+0.1
2,707,925	+				+0.5
2,707,925	+				-1.0
2,707,933	-				-1.6
2,707,933	-				-1.5
2,707,933	-				-2.0
2,707,934	+				-0.4
2,707,940	+				+0.2
2,707,940	+				-0.3
2,707,942	-				-0.3
2,707,948	-				-2.2
2,707,948	-				+0.3
2,707,948	-				-0.8
2,707,988	+				+0.0
2,708,002	+				+1.1
2,708,010	-				-1.1
2,708,010	-				-1.8
2,708,010	-				+0.3
2,708,010	-				+0.2
2,708,014	+				-0.2
2,708,023	-				-0.1
2,708,027	+				+0.1
2,708,027	+				-1.1
2,708,028	-				+1.2
2,708,035	-				-0.2
2,708,035	-				+0.1
2,708,035	-				-0.9
2,708,043	-				+0.2
2,708,070	+				-0.8
2,708,079	+				-1.9
2,708,079	+				-1.2
2,708,100	+				+1.0
2,708,108	-				-0.3
2,708,115	+				+0.4
2,708,117	+				-0.6
2,708,117	+				+0.2
2,708,117	+				-2.0
2,708,120	+				-0.2
2,708,125	-				+0.2
2,708,125	-				-0.5
2,708,145	+				-1.4
2,708,145	+				-0.6
2,708,145	+				-0.1
2,708,153	-				+0.2
2,708,153	-				+1.4
2,708,153	-				+0.0
2,708,159	+				+1.7
2,708,188	-				+0.5
2,708,188	-				+0.1
2,708,188	-				+0.0
2,708,192	-				-0.7
2,708,203	+				+0.6
2,708,203	+				-0.5
2,708,203	+				-0.2
2,708,203	+				-1.2
2,708,203	+				-1.8
2,708,203	+				+1.3
2,708,211	-				+0.1
2,708,211	-				-1.5
2,708,211	-				-1.8
2,708,211	-				-1.4
2,708,211	-				+0.1
2,708,213	+				+1.0
2,708,221	-				-0.6
2,708,229	-				+0.1
2,708,253	+				+1.2
2,708,253	+				-0.0
2,708,253	+				+0.8
2,708,253	+				-1.2
2,708,253	+				-0.8
2,708,253	+				-0.7
2,708,261	-				-1.0
2,708,261	-				-1.5
2,708,261	-				+1.0
2,708,261	-				+0.4
2,708,261	-				+0.6
2,708,261	-				-0.6
2,708,261	-				-0.7
2,708,261	-				-0.9
2,708,261	-				-1.5
2,708,273	-				-0.6
2,708,293	+				-1.5
2,708,294	+				+0.0
2,708,303	+				-1.1
2,708,308	+				-2.2
2,708,316	-				-0.1
2,708,324	+				-0.4
2,708,345	-				-0.5
2,708,352	+				+1.1
2,708,355	-				-0.4
2,708,355	-				+1.4
2,708,369	-				+0.5
2,708,383	-				+0.4
2,708,391	-				-0.4
2,708,434	-				-1.6
2,708,488	-				+0.8
2,708,519	+		GFF2688	0.16	-1.5
2,708,519	+		GFF2688	0.16	+0.1
2,708,527	+		GFF2688	0.17	-1.2
2,708,527	+		GFF2688	0.17	-0.4
2,708,527	+		GFF2688	0.17	-1.6
2,708,527	-		GFF2688	0.17	-1.3
2,708,527	-		GFF2688	0.17	-1.7
2,708,527	-		GFF2688	0.17	-0.1
2,708,529	+		GFF2688	0.18	+0.4
2,708,530	-		GFF2688	0.18	+1.2
2,708,530	-		GFF2688	0.18	-0.1
2,708,535	+		GFF2688	0.19	+1.1
2,708,535	+		GFF2688	0.19	+0.0
2,708,535	-		GFF2688	0.19	+1.0
2,708,535	-		GFF2688	0.19	-1.7
2,708,536	-		GFF2688	0.19	-1.7
2,708,536	-		GFF2688	0.19	-0.6
2,708,536	-		GFF2688	0.19	+0.7
2,708,554	+		GFF2688	0.23	-0.3
2,708,560	-		GFF2688	0.24	+0.7
2,708,562	-		GFF2688	0.25	-1.6
2,708,562	-		GFF2688	0.25	-0.7
2,708,567	-		GFF2688	0.26	+0.1
2,708,573	+		GFF2688	0.27	+1.2
2,708,573	+		GFF2688	0.27	-0.6
2,708,604	+		GFF2688	0.33	-0.6
2,708,617	-		GFF2688	0.36	-1.7
2,708,617	-		GFF2688	0.36	-1.2
2,708,625	-		GFF2688	0.38	+0.6
2,708,635	-		GFF2688	0.40	-0.2
2,708,637	+		GFF2688	0.40	+0.1
2,708,640	-		GFF2688	0.41	-1.2
2,708,649	+		GFF2688	0.43	-0.9
2,708,667	+		GFF2688	0.47	-1.1
2,708,686	+		GFF2688	0.51	-1.0
2,708,686	+		GFF2688	0.51	-1.3
2,708,689	-		GFF2688	0.51	-1.0
2,708,692	+		GFF2688	0.52	-2.8
2,708,694	-		GFF2688	0.52	-1.6
2,708,694	-		GFF2688	0.52	-0.8
2,708,698	+		GFF2688	0.53	-1.2
2,708,698	+		GFF2688	0.53	-1.9
2,708,698	+		GFF2688	0.53	+0.5
2,708,700	+		GFF2688	0.53	-1.1
2,708,708	+		GFF2688	0.55	-0.9
2,708,726	-		GFF2688	0.59	+0.7
2,708,736	-		GFF2688	0.61	+0.1
2,708,749	-		GFF2688	0.64	-0.2
2,708,784	+		GFF2688	0.71	-1.9
2,708,789	+		GFF2688	0.72	-1.0
2,708,789	+		GFF2688	0.72	+0.0
2,708,803	+		GFF2688	0.75	+0.3
2,708,808	+		GFF2688	0.76	-1.3
2,708,808	+		GFF2688	0.76	+0.1
2,708,808	+		GFF2688	0.76	-1.0
2,708,811	-		GFF2688	0.77	+0.6
2,708,811	-		GFF2688	0.77	-1.9
2,708,816	-		GFF2688	0.78	-0.6
2,708,816	-		GFF2688	0.78	-0.9
2,708,816	-		GFF2688	0.78	-1.2
2,708,825	+		GFF2688	0.80	-1.4
2,708,825	+		GFF2688	0.80	-1.4
2,708,834	+		GFF2688	0.82	+1.4
2,708,862	+		GFF2688	0.87	+0.5
2,708,862	+		GFF2688	0.87	-0.7
2,708,864	+		GFF2688	0.88	-0.4
2,708,879	+				+0.3
2,708,879	+				-0.5
2,708,879	+				-0.5
2,708,882	-				-1.1
2,708,887	-				-1.7
2,708,887	-				-0.3
2,708,887	-				-0.4