Strain Fitness in Sphingobium sp. HT1-2 around GFF2684

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,704,248	-				-0.7
2,704,248	-				-0.6
2,704,248	-				-1.9
2,704,248	-				+0.1
2,704,259	+				+0.6
2,704,302	-				+0.8
2,704,314	+		GFF2683	0.13	+1.3
2,704,314	+		GFF2683	0.13	-1.3
2,704,316	+		GFF2683	0.14	+0.5
2,704,319	+		GFF2683	0.15	-1.0
2,704,322	-		GFF2683	0.16	-1.3
2,704,324	+		GFF2683	0.17	+0.6
2,704,329	+		GFF2683	0.19	+1.0
2,704,329	+		GFF2683	0.19	-0.3
2,704,329	+		GFF2683	0.19	-0.8
2,704,329	+		GFF2683	0.19	-0.5
2,704,332	-		GFF2683	0.20	-0.8
2,704,334	+		GFF2683	0.20	+0.1
2,704,337	-		GFF2683	0.21	+0.3
2,704,337	-		GFF2683	0.21	-0.5
2,704,337	-		GFF2683	0.21	+0.3
2,704,342	-		GFF2683	0.23	-0.6
2,704,347	-		GFF2683	0.25	+0.1
2,704,385	-		GFF2683	0.38	-1.1
2,704,387	+		GFF2683	0.38	-0.6
2,704,395	+		GFF2683	0.41	+0.4
2,704,400	+		GFF2683	0.43	+0.7
2,704,400	+		GFF2683	0.43	+0.1
2,704,416	-		GFF2683	0.48	+0.5
2,704,416	-		GFF2683	0.48	-0.5
2,704,421	-		GFF2683	0.50	+0.2
2,704,431	+		GFF2683	0.54	-1.9
2,704,439	-		GFF2683	0.56	-1.2
2,704,439	-		GFF2683	0.56	-1.2
2,704,444	+		GFF2683	0.58	-1.5
2,704,449	-		GFF2683	0.60	-1.7
2,704,455	+		GFF2683	0.62	-0.9
2,704,455	+		GFF2683	0.62	-0.6
2,704,455	+		GFF2683	0.62	-1.2
2,704,484	+		GFF2683	0.72	+0.3
2,704,484	+		GFF2683	0.72	-0.4
2,704,484	+		GFF2683	0.72	-0.5
2,704,484	+		GFF2683	0.72	+0.7
2,704,485	+		GFF2683	0.72	-0.5
2,704,485	+		GFF2683	0.72	+0.0
2,704,492	-		GFF2683	0.75	-0.4
2,704,492	-		GFF2683	0.75	+0.5
2,704,492	-		GFF2683	0.75	+0.6
2,704,492	-		GFF2683	0.75	+0.9
2,704,492	-		GFF2683	0.75	-0.3
2,704,503	+		GFF2683	0.78	-2.5
2,704,530	+		GFF2683	0.88	+0.7
2,704,530	+		GFF2683	0.88	-1.6
2,704,530	+		GFF2683	0.88	+0.3
2,704,538	-				-0.5
2,704,538	-				+0.0
2,704,544	-				+0.6
2,704,550	+				-0.7
2,704,551	-				+0.3
2,704,568	+				+0.6
2,704,569	+				+1.6
2,704,569	+				-0.4
2,704,574	+				+0.3
2,704,576	-				+0.6
2,704,588	-				-1.0
2,704,592	+				+0.8
2,704,592	+				+0.3
2,704,594	-				-0.7
2,704,594	-				+0.2
2,704,594	-				-0.3
2,704,594	-				+0.0
2,704,614	+				-0.8
2,704,615	-				-2.2
2,704,633	-				+0.5
2,704,633	-				+0.4
2,704,635	+				+1.2
2,704,635	+				-0.8
2,704,636	+				-0.1
2,704,636	+				-0.6
2,704,636	+				-1.2
2,704,636	+				+0.5
2,704,636	+				-0.5
2,704,636	+				-1.0
2,704,636	+				+0.3
2,704,636	+				+1.4
2,704,636	+				-1.8
2,704,636	+				-0.2
2,704,636	+				-0.0
2,704,636	+				-0.8
2,704,636	+				+0.6
2,704,636	+				-0.4
2,704,636	+				-1.2
2,704,636	+				+0.9
2,704,643	-				-1.0
2,704,643	-				-0.2
2,704,643	-				+1.3
2,704,644	-				-0.9
2,704,644	-				+0.3
2,704,644	-				+0.6
2,704,644	-				+0.4
2,704,644	-				+0.9
2,704,644	-				+1.2
2,704,644	-				+0.8
2,704,644	-				-1.1
2,704,644	-				+0.6
2,704,644	-				-1.2
2,704,644	-				+1.5
2,704,644	-				+0.5
2,704,644	-				+0.5
2,704,644	-				-1.4
2,704,644	-				-0.8
2,704,644	-				+0.6
2,704,647	+				+0.1
2,704,649	-				+0.8
2,704,677	-				+2.6
2,704,721	-				+0.3
2,704,723	+				-1.6
2,704,723	+				+1.0
2,704,731	-				+0.1
2,704,737	+				-0.7
2,704,740	-				-0.6
2,704,742	+				+1.6
2,704,745	-				+0.3
2,704,745	-				-0.9
2,704,749	+				+0.1
2,704,750	-				-0.4
2,704,761	+				+0.9
2,704,761	+				-0.6
2,704,761	+				+0.1
2,704,769	-				-0.4
2,704,769	-				+0.2
2,704,769	-				+0.3
2,704,770	-				-0.4
2,704,774	-				-0.4
2,704,776	+				-1.9
2,704,776	+				+0.2
2,704,811	+				+0.1
2,704,821	+				+1.1
2,704,821	+				-1.5
2,704,829	-				+0.1
2,704,829	-				-0.6
2,704,829	-				-0.7
2,704,829	-				-0.8
2,704,829	-				+0.2
2,704,829	-				-1.1
2,704,831	+				-2.1
2,704,839	+				-0.8
2,704,892	+				+0.4
2,704,892	+				-1.0
2,704,893	+				+0.6
2,704,900	+				-1.7
2,704,900	+				+0.4
2,704,900	+				-1.2
2,704,900	-				+0.4
2,704,901	-				-1.7
2,704,906	-				-0.9
2,704,908	-				-0.5
2,704,908	-				-0.9
2,704,908	-				+0.2
2,704,908	-				+0.2
2,704,910	-				-3.2
2,704,918	+				+0.9
2,704,926	+				+0.8
2,704,926	+				-1.9
2,704,926	-				+1.2
2,704,928	+				+1.0
2,704,941	+				+0.3
2,704,952	+				-0.0
2,704,958	+				-1.1
2,704,976	+				-0.5
2,704,976	+				+0.2
2,704,998	-				-0.4
2,705,003	-				+0.7
2,705,003	-				-0.7
2,705,030	-				+0.7
2,705,055	+				-2.2
2,705,070	-				+0.6
2,705,073	+				+0.4
2,705,073	+				-0.2
2,705,073	+				-0.0
2,705,073	+				-1.2
2,705,073	+				-0.5
2,705,073	+				+0.1
2,705,078	+				-0.7
2,705,081	-				+0.5
2,705,081	-				+0.8
2,705,088	-				-0.3
2,705,090	+				-0.0
2,705,090	+				-1.9
2,705,090	+				-1.0
2,705,092	+				-1.6
2,705,092	+				-2.1
2,705,092	+				-0.0
2,705,092	+				-0.0
2,705,092	+				-0.7
2,705,092	+				-0.3
2,705,092	+				-0.3
2,705,092	+				-1.4
2,705,092	+				+1.2
2,705,092	+				+0.0
2,705,092	+				+0.4
2,705,092	+				-0.2
2,705,092	+				-0.6
2,705,098	-				+0.4
2,705,100	-				-0.4
2,705,100	-				-1.4
2,705,100	-				+0.6
2,705,100	-				-0.2
2,705,100	-				-3.3
2,705,100	-				-0.2
2,705,100	-				-0.9
2,705,100	-				+0.2
2,705,100	-				-0.6
2,705,100	-				+0.2
2,705,100	-				-0.0
2,705,100	-				-1.2
2,705,100	-				-0.4
2,705,100	-				+0.9
2,705,100	-				+0.1
2,705,102	+				-1.2
2,705,105	-				-0.4
2,705,109	-				-0.4
2,705,141	+				+0.6
2,705,145	+				-0.6
2,705,150	+				+0.4
2,705,158	-				-0.8
2,705,161	-				-0.2
2,705,178	-				-0.1
2,705,217	+				-0.2
2,705,230	+				+0.1
2,705,230	+				-0.1
2,705,239	+				+1.2
2,705,267	-				+0.2
2,705,271	+				+0.5
2,705,278	+				+0.6
2,705,281	+				+0.4
2,705,281	+				-0.0
2,705,283	+				-1.5
2,705,283	+				+0.6
2,705,283	+				-0.3
2,705,283	+				+0.1
2,705,283	+				-0.1
2,705,283	+				-1.8
2,705,283	+				+0.2
2,705,283	+				-1.1
2,705,283	+				+0.9
2,705,283	+				-0.2
2,705,283	+				+0.3
2,705,283	+				-1.2
2,705,283	+				+0.6
2,705,283	+				-1.8
2,705,283	+				-1.4
2,705,283	+				-0.9
2,705,283	+				+0.1
2,705,283	+				-0.1
2,705,283	+				-1.9
2,705,283	+				+0.5
2,705,283	+				-0.8
2,705,283	+				-0.8
2,705,283	+				+0.7
2,705,283	+				+0.8
2,705,283	+				+0.3
2,705,283	+				-0.5
2,705,283	+				-1.2
2,705,283	+				-0.1
2,705,283	+				-1.2
2,705,283	+				-0.8
2,705,283	+				-1.3
2,705,283	+				+0.6
2,705,283	+				-0.2
2,705,283	+				+0.2
2,705,283	+				+0.8
2,705,289	-				-0.1
2,705,291	-				-0.2
2,705,291	-				+0.4
2,705,291	-				-0.0
2,705,291	-				-0.6
2,705,291	-				+0.4
2,705,291	-				-0.4
2,705,291	-				-1.5
2,705,291	-				-1.6
2,705,291	-				-0.2
2,705,291	-				+0.1
2,705,291	-				-0.4
2,705,291	-				-2.2
2,705,291	-				-0.2
2,705,291	-				+0.5
2,705,291	-				-2.2
2,705,291	-				+0.2
2,705,291	-				-0.7
2,705,291	-				+1.1
2,705,291	-				-1.5
2,705,291	-				+0.6
2,705,291	-				-1.0
2,705,291	-				-0.6
2,705,291	-				+0.1
2,705,291	-				-1.5
2,705,291	-				+0.2
2,705,291	-				+0.8
2,705,291	-				-1.7
2,705,291	-				-1.4
2,705,291	-				-0.8
2,705,291	-				-0.1
2,705,291	-				-0.5
2,705,291	-				+0.5
2,705,291	-				+1.1
2,705,291	-				-0.2
2,705,291	-				-0.6
2,705,291	-				-0.3
2,705,291	-				-0.9
2,705,291	-				+0.9
2,705,291	-				-0.5
2,705,291	-				-0.6
2,705,291	-				+1.3
2,705,291	-				-0.6
2,705,291	-				+0.8
2,705,291	-				+0.4
2,705,291	-				+0.1
2,705,293	+				-0.9
2,705,293	+				-2.2
2,705,293	+				+1.6
2,705,293	+				-0.8
2,705,293	+				-1.2
2,705,293	+				+0.4
2,705,293	+				-1.6
2,705,293	+				-1.0
2,705,293	+				-1.0
2,705,293	+				-1.2
2,705,293	-				-0.6
2,705,295	+				-2.6
2,705,295	+				+0.8
2,705,301	-				+0.3
2,705,301	-				-0.1
2,705,301	-				-0.2
2,705,301	-				+1.1
2,705,301	-				-0.3
2,705,301	-				+1.0
2,705,301	-				+0.0
2,705,301	-				-0.5
2,705,303	-				+0.2
2,705,312	-				-0.5
2,705,316	-				-0.2
2,705,326	-		GFF2684	0.11	-0.1
2,705,330	+		GFF2684	0.11	+0.1
2,705,338	-		GFF2684	0.12	-1.8
2,705,338	-		GFF2684	0.12	-0.9
2,705,338	-		GFF2684	0.12	-0.8
2,705,354	+		GFF2684	0.14	+0.4
2,705,354	+		GFF2684	0.14	-2.2
2,705,364	-		GFF2684	0.15	+0.3
2,705,390	+		GFF2684	0.18	+0.9
2,705,398	-		GFF2684	0.19	-0.8
2,705,410	+		GFF2684	0.21	-0.9
2,705,410	+		GFF2684	0.21	+1.2
2,705,419	-		GFF2684	0.22	-0.9
2,705,429	+		GFF2684	0.23	-1.6
2,705,440	-		GFF2684	0.24	+0.8
2,705,442	+		GFF2684	0.25	+0.4
2,705,465	+		GFF2684	0.27	-0.2
2,705,473	+		GFF2684	0.28	+0.5
2,705,473	-		GFF2684	0.28	+0.3
2,705,473	-		GFF2684	0.28	+1.0
2,705,473	-		GFF2684	0.28	+0.6
2,705,491	+		GFF2684	0.30	-2.0
2,705,491	+		GFF2684	0.30	+0.0
2,705,499	-		GFF2684	0.31	-0.6
2,705,499	-		GFF2684	0.31	+1.0
2,705,499	-		GFF2684	0.31	+0.1
2,705,499	-		GFF2684	0.31	+0.7
2,705,507	+		GFF2684	0.32	-2.2
2,705,520	-		GFF2684	0.34	+0.2
2,705,522	+		GFF2684	0.34	+0.6
2,705,523	+		GFF2684	0.34	-1.0
2,705,548	-		GFF2684	0.37	+0.5
2,705,548	-		GFF2684	0.37	-0.4
2,705,548	-		GFF2684	0.37	+0.6
2,705,557	+		GFF2684	0.38	-1.2
2,705,565	+		GFF2684	0.39	-0.8
2,705,565	-		GFF2684	0.39	-0.4
2,705,582	+		GFF2684	0.41	-2.6
2,705,585	-		GFF2684	0.41	-1.1
2,705,587	+		GFF2684	0.42	-1.1
2,705,591	+		GFF2684	0.42	-1.2
2,705,599	-		GFF2684	0.43	+0.1
2,705,599	-		GFF2684	0.43	-0.2
2,705,599	-		GFF2684	0.43	-0.9
2,705,675	+		GFF2684	0.52	-0.8
2,705,676	-		GFF2684	0.52	-0.9
2,705,676	-		GFF2684	0.52	-0.8
2,705,683	-		GFF2684	0.53	+0.6
2,705,683	-		GFF2684	0.53	-0.0
2,705,683	-		GFF2684	0.53	-0.7
2,705,684	+		GFF2684	0.53	-0.7
2,705,707	+		GFF2684	0.56	-1.4
2,705,707	+		GFF2684	0.56	+0.4
2,705,712	+		GFF2684	0.56	+0.2
2,705,715	-		GFF2684	0.56	+0.6
2,705,715	-		GFF2684	0.56	+0.5
2,705,715	-		GFF2684	0.56	-0.5
2,705,717	+		GFF2684	0.57	+0.9
2,705,720	-		GFF2684	0.57	-0.4
2,705,720	-		GFF2684	0.57	-0.6
2,705,720	-		GFF2684	0.57	+0.4
2,705,745	-		GFF2684	0.60	+0.1
2,705,755	+		GFF2684	0.61	-0.6
2,705,757	+		GFF2684	0.61	+0.8
2,705,761	+		GFF2684	0.62	-0.6
2,705,769	-		GFF2684	0.63	-1.3
2,705,777	+		GFF2684	0.64	+0.7
2,705,777	+		GFF2684	0.64	-0.5
2,705,785	-		GFF2684	0.65	-0.7
2,705,796	+		GFF2684	0.66	+0.3
2,705,799	-		GFF2684	0.66	+0.2
2,705,804	-		GFF2684	0.67	+0.1
2,705,808	-		GFF2684	0.67	+0.6
2,705,813	-		GFF2684	0.68	-1.0
2,705,818	-		GFF2684	0.69	+0.1
2,705,855	-		GFF2684	0.73	-0.4
2,705,856	+		GFF2684	0.73	+0.9
2,705,862	-		GFF2684	0.74	+1.0
2,705,864	-		GFF2684	0.74	+0.1
2,705,864	-		GFF2684	0.74	+1.7
2,705,882	-		GFF2684	0.76	+0.2
2,705,887	-		GFF2684	0.77	+0.0
2,705,893	+		GFF2684	0.77	-0.1
2,705,893	-		GFF2684	0.77	-0.3
2,705,903	+		GFF2684	0.78	+0.3
2,705,913	-		GFF2684	0.80	-0.6
2,706,017	+				-0.0
2,706,025	-				-0.4
2,706,050	-				-0.9
2,706,060	-				-0.3
2,706,070	+				-0.6
2,706,070	+				+0.6
2,706,070	+				-1.4
2,706,070	+				+0.3
2,706,078	-				+0.4
2,706,078	-				-1.4
2,706,080	+				+0.2
2,706,083	-				+0.0
2,706,126	-				-2.6
2,706,128	+				-0.1
2,706,128	+				-1.2
2,706,128	+				-0.4
2,706,128	+				+1.2
2,706,136	-				+0.1
2,706,166	-				-2.2
2,706,183	-				-0.8
2,706,185	+				-0.3
2,706,186	-				-1.5
2,706,186	-				+0.1
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