Strain Fitness in Sphingobium sp. HT1-2 around GFF2679

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,698,248	+		GFF2678	0.57	-0.6
2,698,248	+		GFF2678	0.57	+0.0
2,698,256	-		GFF2678	0.57	+0.3
2,698,299	+		GFF2678	0.59	+0.4
2,698,299	+		GFF2678	0.59	+0.2
2,698,320	+		GFF2678	0.60	-0.3
2,698,330	-		GFF2678	0.61	-0.4
2,698,330	-		GFF2678	0.61	-0.5
2,698,332	+		GFF2678	0.61	-0.8
2,698,361	+		GFF2678	0.62	-0.4
2,698,372	+		GFF2678	0.62	+0.9
2,698,372	+		GFF2678	0.62	-0.4
2,698,372	+		GFF2678	0.62	-0.6
2,698,372	+		GFF2678	0.62	-0.5
2,698,372	+		GFF2678	0.62	-1.7
2,698,372	+		GFF2678	0.62	+0.5
2,698,372	+		GFF2678	0.62	+0.6
2,698,379	+		GFF2678	0.63	+0.3
2,698,380	-		GFF2678	0.63	+0.1
2,698,380	-		GFF2678	0.63	-0.9
2,698,380	-		GFF2678	0.63	+0.3
2,698,380	-		GFF2678	0.63	-1.4
2,698,380	-		GFF2678	0.63	-0.4
2,698,384	+		GFF2678	0.63	-0.4
2,698,384	+		GFF2678	0.63	-1.2
2,698,389	+		GFF2678	0.63	+1.5
2,698,390	-		GFF2678	0.63	-1.5
2,698,390	-		GFF2678	0.63	+0.3
2,698,392	-		GFF2678	0.63	-1.4
2,698,394	+		GFF2678	0.63	-1.7
2,698,394	+		GFF2678	0.63	-0.2
2,698,394	+		GFF2678	0.63	-0.5
2,698,397	-		GFF2678	0.64	-0.6
2,698,397	-		GFF2678	0.64	+0.0
2,698,402	-		GFF2678	0.64	-0.2
2,698,402	-		GFF2678	0.64	+0.3
2,698,402	-		GFF2678	0.64	+0.3
2,698,402	-		GFF2678	0.64	-0.7
2,698,402	-		GFF2678	0.64	-1.5
2,698,412	-		GFF2678	0.64	-0.0
2,698,445	-		GFF2678	0.66	-0.4
2,698,452	-		GFF2678	0.66	-0.7
2,698,459	-		GFF2678	0.66	-1.5
2,698,464	+		GFF2678	0.66	+1.1
2,698,472	-		GFF2678	0.67	-0.6
2,698,479	+		GFF2678	0.67	+0.2
2,698,483	-		GFF2678	0.67	-2.1
2,698,485	+		GFF2678	0.67	+0.1
2,698,489	+		GFF2678	0.68	+0.4
2,698,489	+		GFF2678	0.68	+0.5
2,698,494	+		GFF2678	0.68	+0.4
2,698,494	+		GFF2678	0.68	+0.9
2,698,494	+		GFF2678	0.68	-1.4
2,698,497	-		GFF2678	0.68	-1.0
2,698,502	-		GFF2678	0.68	+1.0
2,698,511	+		GFF2678	0.69	-0.2
2,698,519	-		GFF2678	0.69	+0.1
2,698,522	+		GFF2678	0.69	-0.7
2,698,522	+		GFF2678	0.69	-0.2
2,698,522	+		GFF2678	0.69	+0.6
2,698,522	+		GFF2678	0.69	-1.0
2,698,522	+		GFF2678	0.69	+1.3
2,698,522	+		GFF2678	0.69	-0.2
2,698,522	+		GFF2678	0.69	-0.4
2,698,522	+		GFF2678	0.69	+0.3
2,698,526	-		GFF2678	0.69	-0.1
2,698,530	-		GFF2678	0.69	-0.4
2,698,530	-		GFF2678	0.69	+0.3
2,698,530	-		GFF2678	0.69	-1.2
2,698,530	-		GFF2678	0.69	-1.5
2,698,540	+		GFF2678	0.70	+0.3
2,698,556	+		GFF2678	0.71	+0.3
2,698,566	-		GFF2678	0.71	-0.8
2,698,571	-		GFF2678	0.71	-0.4
2,698,593	+		GFF2678	0.72	+0.4
2,698,593	-		GFF2678	0.72	+1.0
2,698,593	-		GFF2678	0.72	-1.2
2,698,603	+		GFF2678	0.73	-2.1
2,698,603	+		GFF2678	0.73	-2.8
2,698,611	-		GFF2678	0.73	+0.4
2,698,611	-		GFF2678	0.73	-1.4
2,698,611	-		GFF2678	0.73	+0.2
2,698,616	-		GFF2678	0.73	-0.2
2,698,620	-		GFF2678	0.73	-0.3
2,698,627	+		GFF2678	0.74	+0.1
2,698,635	-		GFF2678	0.74	+0.5
2,698,636	-		GFF2678	0.74	-0.2
2,698,665	+		GFF2678	0.75	+0.4
2,698,665	+		GFF2678	0.75	+0.1
2,698,665	+		GFF2678	0.75	+0.1
2,698,673	-		GFF2678	0.76	-0.7
2,698,673	-		GFF2678	0.76	+1.0
2,698,689	-		GFF2678	0.76	-1.8
2,698,693	+		GFF2678	0.77	-0.8
2,698,706	-		GFF2678	0.77	-0.1
2,698,708	+		GFF2678	0.77	-0.3
2,698,708	+		GFF2678	0.77	-0.3
2,698,716	-		GFF2678	0.78	+0.5
2,698,716	-		GFF2678	0.78	+0.6
2,698,716	-		GFF2678	0.78	+0.8
2,698,725	-		GFF2678	0.78	+1.1
2,698,747	-		GFF2678	0.79	+0.3
2,698,747	-		GFF2678	0.79	-0.2
2,698,747	-		GFF2678	0.79	+0.3
2,698,760	+		GFF2678	0.80	-1.0
2,698,768	-		GFF2678	0.80	+0.3
2,698,778	-		GFF2678	0.80	-0.5
2,698,787	-		GFF2678	0.81	-1.6
2,698,792	+		GFF2678	0.81	+0.0
2,698,795	-		GFF2678	0.81	+0.6
2,698,831	+		GFF2678	0.83	-0.7
2,698,831	+		GFF2678	0.83	-1.6
2,698,831	+		GFF2678	0.83	+0.1
2,698,833	+		GFF2678	0.83	-0.7
2,698,833	+		GFF2678	0.83	-1.0
2,698,833	+		GFF2678	0.83	+0.5
2,698,833	-		GFF2678	0.83	+0.6
2,698,839	-		GFF2678	0.83	+0.9
2,698,839	-		GFF2678	0.83	+0.6
2,698,854	+		GFF2678	0.84	-0.1
2,698,854	+		GFF2678	0.84	-1.8
2,698,862	-		GFF2678	0.84	+0.3
2,698,905	-		GFF2678	0.86	-0.8
2,698,907	+		GFF2678	0.86	+0.6
2,698,935	-		GFF2678	0.87	-1.0
2,698,935	-		GFF2678	0.87	+0.9
2,698,936	-		GFF2678	0.87	-1.2
2,698,936	-		GFF2678	0.87	-0.8
2,698,936	-		GFF2678	0.87	+0.2
2,698,936	-		GFF2678	0.87	+1.6
2,698,952	+		GFF2678	0.88	+0.5
2,698,952	+		GFF2678	0.88	-0.6
2,698,957	+		GFF2678	0.88	-1.0
2,698,957	+		GFF2678	0.88	+1.0
2,698,957	+		GFF2678	0.88	+0.0
2,698,960	-		GFF2678	0.88	+0.4
2,698,960	-		GFF2678	0.88	-1.4
2,698,960	-		GFF2678	0.88	-0.9
2,698,965	-		GFF2678	0.89	+0.1
2,698,989	+		GFF2678	0.90	-0.6
2,698,998	-				-1.2
2,699,010	-				+1.4
2,699,013	+				-1.2
2,699,016	-				+0.4
2,699,023	+				-0.2
2,699,024	-				+1.0
2,699,031	-				-0.7
2,699,031	-				+0.5
2,699,036	-				-0.6
2,699,038	+				+0.8
2,699,046	-				-0.4
2,699,066	+				+0.2
2,699,066	+				+0.3
2,699,102	+				-0.8
2,699,102	+				+1.2
2,699,103	-				-0.2
2,699,103	-				-0.2
2,699,105	-				+0.0
2,699,110	-				+0.0
2,699,110	-				+0.9
2,699,110	-				+0.4
2,699,123	+				+0.6
2,699,123	+				+0.8
2,699,136	+				-0.1
2,699,146	+				+0.0
2,699,146	+				-1.6
2,699,154	-				+0.8
2,699,154	-				-0.6
2,699,154	-				-1.4
2,699,167	+				+1.1
2,699,175	-				-0.5
2,699,210	-				+0.2
2,699,210	-				-1.1
2,699,210	-				-1.5
2,699,216	+				+0.0
2,699,216	+				-0.6
2,699,223	+				+0.4
2,699,223	+				-2.2
2,699,226	-				+0.6
2,699,235	+				-1.1
2,699,235	+				+0.9
2,699,241	+				+1.0
2,699,244	-				+0.9
2,699,248	-				+1.4
2,699,248	-				-0.2
2,699,251	-				+0.0
2,699,257	+				-0.4
2,699,257	+				-0.1
2,699,257	+				+1.0
2,699,257	+				-1.8
2,699,265	-				-0.2
2,699,265	-				+0.1
2,699,265	-				+0.6
2,699,265	-				-0.1
2,699,265	-				-0.8
2,699,265	-				+0.7
2,699,272	+				+1.0
2,699,280	-				-0.2
2,699,306	+				-1.8
2,699,308	-				+0.6
2,699,308	-				-0.7
2,699,313	+				-1.6
2,699,339	+		GFF2679	0.10	-2.0
2,699,339	+		GFF2679	0.10	+0.6
2,699,347	-		GFF2679	0.11	-1.7
2,699,371	+		GFF2679	0.13	-3.2
2,699,374	-		GFF2679	0.14	-1.0
2,699,380	+		GFF2679	0.14	-1.9
2,699,380	+		GFF2679	0.14	+0.4
2,699,381	+		GFF2679	0.14	+0.5
2,699,388	-		GFF2679	0.15	-0.1
2,699,392	-		GFF2679	0.16	-1.5
2,699,398	-		GFF2679	0.16	-0.1
2,699,399	-		GFF2679	0.16	-0.5
2,699,403	+		GFF2679	0.17	-1.0
2,699,413	+		GFF2679	0.18	+0.4
2,699,421	-		GFF2679	0.19	-0.2
2,699,434	+		GFF2679	0.20	+1.4
2,699,434	+		GFF2679	0.20	-0.2
2,699,442	-		GFF2679	0.21	-0.4
2,699,447	+		GFF2679	0.21	-0.0
2,699,468	+		GFF2679	0.24	-0.6
2,699,517	+		GFF2679	0.29	+1.7
2,699,533	+		GFF2679	0.30	+1.1
2,699,541	-		GFF2679	0.31	+1.3
2,699,541	-		GFF2679	0.31	+0.4
2,699,545	+		GFF2679	0.32	+0.2
2,699,552	+		GFF2679	0.32	+0.8
2,699,553	-		GFF2679	0.32	+0.2
2,699,553	-		GFF2679	0.32	-0.1
2,699,553	-		GFF2679	0.32	-1.1
2,699,553	-		GFF2679	0.32	-0.7
2,699,555	+		GFF2679	0.33	+1.2
2,699,561	-		GFF2679	0.33	+1.2
2,699,563	-		GFF2679	0.34	-1.5
2,699,563	-		GFF2679	0.34	-0.4
2,699,568	-		GFF2679	0.34	-0.2
2,699,573	-		GFF2679	0.35	+0.6
2,699,582	+		GFF2679	0.36	-0.4
2,699,582	+		GFF2679	0.36	-2.4
2,699,587	+		GFF2679	0.36	+0.7
2,699,590	-		GFF2679	0.36	+1.0
2,699,595	-		GFF2679	0.37	-0.0
2,699,600	+		GFF2679	0.37	+1.3
2,699,601	+		GFF2679	0.38	-0.3
2,699,602	+		GFF2679	0.38	-1.5
2,699,606	+		GFF2679	0.38	-1.7
2,699,607	+		GFF2679	0.38	+0.8
2,699,609	-		GFF2679	0.38	-0.5
2,699,614	+		GFF2679	0.39	-2.4
2,699,614	-		GFF2679	0.39	+0.2
2,699,624	+		GFF2679	0.40	-0.3
2,699,639	-		GFF2679	0.42	+0.6
2,699,643	-		GFF2679	0.42	-0.4
2,699,643	-		GFF2679	0.42	-1.8
2,699,651	-		GFF2679	0.43	-0.3
2,699,653	-		GFF2679	0.43	+0.4
2,699,658	+		GFF2679	0.44	+0.2
2,699,658	+		GFF2679	0.44	-0.5
2,699,666	-		GFF2679	0.44	-0.1
2,699,666	-		GFF2679	0.44	+1.2
2,699,675	+		GFF2679	0.45	-1.2
2,699,723	-		GFF2679	0.50	+0.3
2,699,734	-		GFF2679	0.52	-0.1
2,699,749	-		GFF2679	0.53	+0.6
2,699,753	-		GFF2679	0.54	+0.6
2,699,757	-		GFF2679	0.54	+0.1
2,699,763	-		GFF2679	0.55	+0.0
2,699,764	-		GFF2679	0.55	-0.8
2,699,773	+		GFF2679	0.56	+0.6
2,699,773	+		GFF2679	0.56	+0.1
2,699,779	+		GFF2679	0.56	-0.0
2,699,825	+		GFF2679	0.61	-0.0
2,699,825	+		GFF2679	0.61	-0.6
2,699,825	-		GFF2679	0.61	-1.0
2,699,833	-		GFF2679	0.62	-1.6
2,699,833	-		GFF2679	0.62	-0.8
2,699,833	-		GFF2679	0.62	-2.0
2,699,834	-		GFF2679	0.62	+0.2
2,699,835	+		GFF2679	0.62	-0.6
2,699,838	-		GFF2679	0.62	-1.9
2,699,849	-		GFF2679	0.64	+1.4
2,699,855	+		GFF2679	0.64	+0.6
2,699,855	+		GFF2679	0.64	+0.5
2,699,860	+		GFF2679	0.65	-0.9
2,699,860	+		GFF2679	0.65	+0.1
2,699,861	-		GFF2679	0.65	-0.4
2,699,863	-		GFF2679	0.65	-1.3
2,699,865	+		GFF2679	0.65	-1.9
2,699,869	-		GFF2679	0.66	-1.6
2,699,888	-		GFF2679	0.68	-0.9
2,699,913	-		GFF2679	0.70	-1.7
2,699,916	+		GFF2679	0.71	-0.4
2,699,924	-		GFF2679	0.72	-0.4
2,699,928	+		GFF2679	0.72	-0.7
2,699,936	+		GFF2679	0.73	+1.0
2,699,994	+		GFF2679	0.79	+0.5
2,700,018	-		GFF2679	0.81	-0.6
2,700,041	-		GFF2679	0.84	-0.2
2,700,083	+		GFF2679	0.88	+0.1
2,700,114	+				-0.5
2,700,122	-				-0.8
2,700,122	-				-0.3
2,700,126	+				+0.1
2,700,126	+				-0.4
2,700,134	-				+0.1
2,700,134	-				-0.7
2,700,134	-				+0.5
2,700,134	-				+2.0
2,700,134	-				+0.8
2,700,147	+				+0.5
2,700,163	+				+0.0
2,700,163	+				-3.0
2,700,182	+				+1.3
2,700,216	+				+0.5
2,700,234	+				-1.1
2,700,236	+				+0.2
2,700,242	-				+0.4
2,700,254	+				-0.4
2,700,279	-				-0.5
2,700,282	+				+0.1
2,700,285	-				+1.3
2,700,298	+				-1.4
2,700,306	-				+0.1
2,700,306	-				+0.2
2,700,306	-				-0.4
2,700,306	-				-0.5
2,700,308	+				-2.9
2,700,314	+				-0.4
2,700,322	-				+0.4
2,700,370	+				-1.7
2,700,394	+		GFF2680	0.11	+0.0
2,700,396	+		GFF2680	0.11	-0.5
2,700,396	-		GFF2680	0.11	-0.1
2,700,402	-		GFF2680	0.11	+0.5
2,700,409	-		GFF2680	0.12	-0.6
2,700,420	+		GFF2680	0.12	+0.1
2,700,420	+		GFF2680	0.12	-1.2
2,700,420	+		GFF2680	0.12	-0.6
2,700,420	+		GFF2680	0.12	-0.9
2,700,420	+		GFF2680	0.12	-0.5
2,700,420	+		GFF2680	0.12	+0.6
2,700,420	+		GFF2680	0.12	+0.3
2,700,420	+		GFF2680	0.12	-1.0
2,700,420	+		GFF2680	0.12	-0.9
2,700,420	+		GFF2680	0.12	-0.7
2,700,420	+		GFF2680	0.12	-1.2
2,700,420	+		GFF2680	0.12	-0.2
2,700,420	+		GFF2680	0.12	-0.5
2,700,420	+		GFF2680	0.12	+0.8
2,700,420	+		GFF2680	0.12	+0.5
2,700,420	+		GFF2680	0.12	+0.7
2,700,420	+		GFF2680	0.12	+0.7
2,700,425	+		GFF2680	0.13	-0.0
2,700,425	+		GFF2680	0.13	-0.9
2,700,425	+		GFF2680	0.13	-1.0
2,700,425	+		GFF2680	0.13	-0.8
2,700,425	+		GFF2680	0.13	+0.4
2,700,428	-		GFF2680	0.13	-0.6
2,700,428	-		GFF2680	0.13	+0.1
2,700,428	-		GFF2680	0.13	+0.4
2,700,428	-		GFF2680	0.13	+0.6
2,700,428	-		GFF2680	0.13	+0.6
2,700,428	-		GFF2680	0.13	-1.8
2,700,428	-		GFF2680	0.13	+0.7
2,700,428	-		GFF2680	0.13	-0.6
2,700,433	-		GFF2680	0.13	+0.3
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