Strain Fitness in Sphingobium sp. HT1-2 around GFF2678

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,695,961	-				-0.8
2,696,014	-				-0.2
2,696,035	+				+0.2
2,696,035	+				+1.0
2,696,035	+				+0.8
2,696,036	-				+0.3
2,696,036	-				+0.1
2,696,036	-				+0.2
2,696,043	-				-2.6
2,696,043	-				-0.1
2,696,043	-				+0.6
2,696,043	-				+0.3
2,696,045	+				+0.2
2,696,045	+				+0.6
2,696,053	-				+1.3
2,696,053	-				+0.0
2,696,058	+				-0.3
2,696,058	+				-1.7
2,696,058	+				-0.6
2,696,076	-		GFF2677	0.12	-0.4
2,696,103	+		GFF2677	0.15	+1.4
2,696,110	+		GFF2677	0.16	+0.4
2,696,117	+		GFF2677	0.17	-0.9
2,696,117	+		GFF2677	0.17	-0.4
2,696,117	+		GFF2677	0.17	+0.6
2,696,117	+		GFF2677	0.17	+0.3
2,696,117	+		GFF2677	0.17	-0.4
2,696,117	+		GFF2677	0.17	-1.3
2,696,117	+		GFF2677	0.17	-1.7
2,696,117	+		GFF2677	0.17	+0.2
2,696,122	+		GFF2677	0.17	+0.1
2,696,125	+		GFF2677	0.18	-1.2
2,696,125	-		GFF2677	0.18	-1.8
2,696,125	-		GFF2677	0.18	-0.9
2,696,125	-		GFF2677	0.18	+1.0
2,696,125	-		GFF2677	0.18	+0.8
2,696,125	-		GFF2677	0.18	-0.2
2,696,125	-		GFF2677	0.18	+0.6
2,696,125	-		GFF2677	0.18	-1.2
2,696,129	+		GFF2677	0.18	-1.1
2,696,150	+		GFF2677	0.21	-0.5
2,696,158	-		GFF2677	0.22	-0.5
2,696,162	+		GFF2677	0.22	+0.3
2,696,162	+		GFF2677	0.22	-0.4
2,696,162	+		GFF2677	0.22	-1.5
2,696,162	+		GFF2677	0.22	-1.1
2,696,162	+		GFF2677	0.22	-1.7
2,696,162	+		GFF2677	0.22	-1.1
2,696,170	-		GFF2677	0.23	-0.7
2,696,170	-		GFF2677	0.23	+0.4
2,696,170	-		GFF2677	0.23	-0.4
2,696,172	+		GFF2677	0.24	+0.0
2,696,180	-		GFF2677	0.25	-0.5
2,696,200	+		GFF2677	0.27	-1.3
2,696,200	+		GFF2677	0.27	+0.5
2,696,200	+		GFF2677	0.27	+0.5
2,696,200	+		GFF2677	0.27	+0.5
2,696,200	+		GFF2677	0.27	-0.4
2,696,200	+		GFF2677	0.27	+0.5
2,696,201	+		GFF2677	0.27	+0.1
2,696,208	-		GFF2677	0.28	+0.7
2,696,219	+		GFF2677	0.29	+1.0
2,696,224	+		GFF2677	0.30	+0.5
2,696,227	+		GFF2677	0.30	-1.5
2,696,227	-		GFF2677	0.30	-0.1
2,696,232	-		GFF2677	0.31	-0.6
2,696,234	+		GFF2677	0.31	+0.9
2,696,234	+		GFF2677	0.31	+0.4
2,696,242	-		GFF2677	0.32	-0.3
2,696,242	-		GFF2677	0.32	-0.4
2,696,242	-		GFF2677	0.32	-2.1
2,696,242	-		GFF2677	0.32	+0.5
2,696,243	-		GFF2677	0.32	-0.5
2,696,243	-		GFF2677	0.32	+0.4
2,696,245	+		GFF2677	0.33	-0.8
2,696,254	+		GFF2677	0.34	+0.7
2,696,254	+		GFF2677	0.34	+0.2
2,696,254	+		GFF2677	0.34	-0.7
2,696,254	+		GFF2677	0.34	+0.0
2,696,254	+		GFF2677	0.34	-0.2
2,696,254	+		GFF2677	0.34	+0.7
2,696,254	+		GFF2677	0.34	-0.8
2,696,254	+		GFF2677	0.34	-1.2
2,696,262	-		GFF2677	0.35	+0.1
2,696,262	-		GFF2677	0.35	-0.9
2,696,262	-		GFF2677	0.35	-0.5
2,696,262	-		GFF2677	0.35	-0.8
2,696,262	-		GFF2677	0.35	+0.8
2,696,262	-		GFF2677	0.35	-1.8
2,696,262	-		GFF2677	0.35	+0.6
2,696,262	-		GFF2677	0.35	+0.5
2,696,262	-		GFF2677	0.35	+1.2
2,696,262	-		GFF2677	0.35	-0.6
2,696,262	-		GFF2677	0.35	-0.6
2,696,262	-		GFF2677	0.35	+0.2
2,696,262	-		GFF2677	0.35	+1.0
2,696,264	+		GFF2677	0.35	-1.1
2,696,264	+		GFF2677	0.35	+0.1
2,696,273	+		GFF2677	0.36	-0.0
2,696,273	+		GFF2677	0.36	-0.7
2,696,273	+		GFF2677	0.36	+1.2
2,696,273	+		GFF2677	0.36	+0.8
2,696,278	+		GFF2677	0.37	-0.2
2,696,281	-		GFF2677	0.37	-1.6
2,696,281	-		GFF2677	0.37	-0.8
2,696,281	-		GFF2677	0.37	-0.8
2,696,285	+		GFF2677	0.38	-1.2
2,696,285	+		GFF2677	0.38	-1.2
2,696,285	+		GFF2677	0.38	+0.2
2,696,285	+		GFF2677	0.38	-0.1
2,696,285	+		GFF2677	0.38	-1.8
2,696,285	+		GFF2677	0.38	+0.7
2,696,286	-		GFF2677	0.38	-0.7
2,696,292	+		GFF2677	0.39	+1.0
2,696,293	-		GFF2677	0.39	+0.4
2,696,293	-		GFF2677	0.39	-0.2
2,696,293	-		GFF2677	0.39	-0.8
2,696,293	-		GFF2677	0.39	-1.0
2,696,293	-		GFF2677	0.39	-0.2
2,696,293	-		GFF2677	0.39	+0.5
2,696,293	-		GFF2677	0.39	-0.4
2,696,293	-		GFF2677	0.39	-0.4
2,696,293	-		GFF2677	0.39	+1.0
2,696,293	-		GFF2677	0.39	-1.3
2,696,295	+		GFF2677	0.39	-1.8
2,696,305	+		GFF2677	0.40	+0.2
2,696,326	+		GFF2677	0.43	+0.5
2,696,329	-		GFF2677	0.43	+0.6
2,696,341	+		GFF2677	0.45	+0.1
2,696,346	+		GFF2677	0.45	-0.6
2,696,351	+		GFF2677	0.46	-0.3
2,696,354	-		GFF2677	0.46	+1.6
2,696,354	-		GFF2677	0.46	-0.1
2,696,356	-		GFF2677	0.47	+1.4
2,696,378	+		GFF2677	0.49	+0.0
2,696,433	+		GFF2677	0.56	-0.7
2,696,434	-		GFF2677	0.56	-0.0
2,696,555	-		GFF2677	0.71	-1.1
2,696,556	-		GFF2677	0.72	+0.0
2,696,563	+		GFF2677	0.72	-0.1
2,696,566	-		GFF2677	0.73	+1.3
2,696,573	+		GFF2677	0.74	-0.5
2,696,573	+		GFF2677	0.74	+1.4
2,696,587	+		GFF2677	0.75	-0.8
2,696,608	+		GFF2677	0.78	+0.2
2,696,628	+		GFF2677	0.81	-0.8
2,696,628	+		GFF2677	0.81	+0.3
2,696,636	-		GFF2677	0.82	-0.9
2,696,644	-		GFF2677	0.83	+0.6
2,696,682	+		GFF2677	0.87	-1.1
2,696,701	-		GFF2677	0.90	-0.1
2,696,722	+				+0.3
2,696,723	-				-1.0
2,696,735	-				-2.2
2,696,737	+				+0.1
2,696,737	+				+0.6
2,696,741	+				+1.0
2,696,747	+				+0.2
2,696,749	-				+0.1
2,696,755	-				-0.2
2,696,756	-				+1.1
2,696,808	+				+0.5
2,696,831	+				+0.2
2,696,863	+				-0.1
2,696,991	+				+0.2
2,696,993	+				-1.1
2,696,993	+				-0.2
2,697,017	-				-0.0
2,697,019	+				-0.0
2,697,048	+				-0.8
2,697,048	+				-0.5
2,697,048	+				-1.4
2,697,048	+				-1.7
2,697,048	+				-1.7
2,697,048	+				-1.2
2,697,048	+				-0.9
2,697,048	+				-1.6
2,697,056	-				-0.8
2,697,056	-				+1.0
2,697,056	-				+1.0
2,697,056	-				+0.6
2,697,056	-				+0.0
2,697,056	-				+1.4
2,697,056	-				+0.6
2,697,056	-				+1.6
2,697,056	-				+0.9
2,697,056	-				+0.2
2,697,064	-				-2.2
2,697,077	-				+1.6
2,697,082	-				-2.2
2,697,110	+				-1.4
2,697,115	+				-1.9
2,697,146	+				+1.2
2,697,146	+				+0.3
2,697,146	+				-0.4
2,697,146	+				+1.6
2,697,146	+				-1.0
2,697,154	-				-0.2
2,697,154	-				+0.6
2,697,174	+				+0.3
2,697,178	+				-2.2
2,697,181	-				+0.2
2,697,188	-		GFF2678	0.10	+0.4
2,697,196	-		GFF2678	0.11	-0.2
2,697,277	+		GFF2678	0.14	-0.1
2,697,277	+		GFF2678	0.14	+0.3
2,697,277	+		GFF2678	0.14	-1.8
2,697,277	+		GFF2678	0.14	-0.8
2,697,277	+		GFF2678	0.14	-0.4
2,697,277	+		GFF2678	0.14	+0.2
2,697,277	+		GFF2678	0.14	-0.1
2,697,285	-		GFF2678	0.14	+0.1
2,697,285	-		GFF2678	0.14	-0.4
2,697,285	-		GFF2678	0.14	+0.1
2,697,285	-		GFF2678	0.14	-0.2
2,697,285	-		GFF2678	0.14	+0.8
2,697,285	-		GFF2678	0.14	+0.3
2,697,285	-		GFF2678	0.14	+0.6
2,697,300	+		GFF2678	0.15	-0.7
2,697,328	-		GFF2678	0.16	-0.7
2,697,344	+		GFF2678	0.17	-1.0
2,697,344	+		GFF2678	0.17	-1.9
2,697,344	+		GFF2678	0.17	+0.5
2,697,344	+		GFF2678	0.17	+1.6
2,697,344	+		GFF2678	0.17	+0.1
2,697,344	+		GFF2678	0.17	+0.2
2,697,347	+		GFF2678	0.17	-1.2
2,697,352	+		GFF2678	0.17	+0.9
2,697,352	+		GFF2678	0.17	-1.6
2,697,352	-		GFF2678	0.17	+0.0
2,697,352	-		GFF2678	0.17	-0.1
2,697,354	+		GFF2678	0.17	+1.4
2,697,354	+		GFF2678	0.17	-0.1
2,697,360	-		GFF2678	0.18	-0.4
2,697,362	-		GFF2678	0.18	+1.0
2,697,362	-		GFF2678	0.18	-0.7
2,697,362	-		GFF2678	0.18	+0.6
2,697,374	+		GFF2678	0.18	-2.4
2,697,395	-		GFF2678	0.19	-0.8
2,697,397	-		GFF2678	0.19	-0.7
2,697,399	+		GFF2678	0.19	+0.7
2,697,405	-		GFF2678	0.20	-0.8
2,697,405	-		GFF2678	0.20	+2.2
2,697,417	-		GFF2678	0.20	+0.3
2,697,417	-		GFF2678	0.20	-0.4
2,697,417	-		GFF2678	0.20	-0.4
2,697,429	+		GFF2678	0.21	+0.5
2,697,445	+		GFF2678	0.22	+0.9
2,697,447	+		GFF2678	0.22	+0.5
2,697,447	+		GFF2678	0.22	-0.2
2,697,468	+		GFF2678	0.23	-0.7
2,697,475	-		GFF2678	0.23	+0.7
2,697,489	+		GFF2678	0.23	-1.2
2,697,509	+		GFF2678	0.24	-0.7
2,697,515	+		GFF2678	0.25	-1.3
2,697,522	+		GFF2678	0.25	-0.4
2,697,522	+		GFF2678	0.25	+0.8
2,697,522	+		GFF2678	0.25	-0.6
2,697,522	+		GFF2678	0.25	+0.0
2,697,529	+		GFF2678	0.25	+0.1
2,697,529	+		GFF2678	0.25	-0.9
2,697,530	-		GFF2678	0.25	-0.4
2,697,530	-		GFF2678	0.25	-1.2
2,697,545	-		GFF2678	0.26	+0.4
2,697,567	+		GFF2678	0.27	+1.2
2,697,567	+		GFF2678	0.27	-0.9
2,697,567	+		GFF2678	0.27	+0.5
2,697,572	+		GFF2678	0.27	-1.6
2,697,572	+		GFF2678	0.27	-0.9
2,697,575	-		GFF2678	0.27	-0.3
2,697,599	+		GFF2678	0.28	-0.8
2,697,599	+		GFF2678	0.28	-0.4
2,697,636	-		GFF2678	0.30	+0.4
2,697,642	+		GFF2678	0.30	-0.0
2,697,653	+		GFF2678	0.31	-1.2
2,697,658	+		GFF2678	0.31	-0.7
2,697,658	+		GFF2678	0.31	-0.2
2,697,666	-		GFF2678	0.31	-2.3
2,697,691	-		GFF2678	0.32	-2.2
2,697,696	-		GFF2678	0.33	-0.5
2,697,702	+		GFF2678	0.33	+0.0
2,697,733	+		GFF2678	0.34	+0.9
2,697,733	+		GFF2678	0.34	+1.2
2,697,733	+		GFF2678	0.34	-0.5
2,697,736	-		GFF2678	0.34	+1.6
2,697,736	-		GFF2678	0.34	-0.6
2,697,737	-		GFF2678	0.34	-0.5
2,697,741	-		GFF2678	0.35	-0.6
2,697,741	-		GFF2678	0.35	-0.4
2,697,753	+		GFF2678	0.35	-0.1
2,697,753	+		GFF2678	0.35	-2.0
2,697,753	+		GFF2678	0.35	+0.0
2,697,753	+		GFF2678	0.35	-0.1
2,697,753	+		GFF2678	0.35	-0.3
2,697,753	+		GFF2678	0.35	+0.3
2,697,757	-		GFF2678	0.35	+0.0
2,697,761	-		GFF2678	0.35	+0.6
2,697,761	-		GFF2678	0.35	-3.3
2,697,761	-		GFF2678	0.35	-0.8
2,697,761	-		GFF2678	0.35	+0.2
2,697,805	+		GFF2678	0.37	+0.1
2,697,807	+		GFF2678	0.37	-2.8
2,697,807	+		GFF2678	0.37	-1.3
2,697,807	+		GFF2678	0.37	-1.7
2,697,807	+		GFF2678	0.37	-1.0
2,697,807	+		GFF2678	0.37	-0.9
2,697,807	+		GFF2678	0.37	+0.4
2,697,807	+		GFF2678	0.37	-0.1
2,697,807	+		GFF2678	0.37	-0.6
2,697,807	+		GFF2678	0.37	-0.0
2,697,807	-		GFF2678	0.37	+0.2
2,697,808	-		GFF2678	0.38	-0.4
2,697,811	+		GFF2678	0.38	-0.8
2,697,814	-		GFF2678	0.38	+0.1
2,697,814	-		GFF2678	0.38	-0.9
2,697,815	-		GFF2678	0.38	+0.6
2,697,815	-		GFF2678	0.38	+1.2
2,697,815	-		GFF2678	0.38	-0.4
2,697,832	+		GFF2678	0.39	-1.2
2,697,849	+		GFF2678	0.39	-0.4
2,697,857	-		GFF2678	0.40	-1.4
2,697,858	-		GFF2678	0.40	-1.2
2,697,887	+		GFF2678	0.41	-1.2
2,697,890	+		GFF2678	0.41	-0.2
2,697,890	+		GFF2678	0.41	+1.0
2,697,890	+		GFF2678	0.41	-1.7
2,697,895	+		GFF2678	0.41	-0.7
2,697,895	-		GFF2678	0.41	-0.9
2,697,895	-		GFF2678	0.41	-0.5
2,697,895	-		GFF2678	0.41	-0.4
2,697,895	-		GFF2678	0.41	-0.5
2,697,897	+		GFF2678	0.41	-2.6
2,697,898	-		GFF2678	0.42	-0.2
2,697,898	-		GFF2678	0.42	-1.9
2,697,905	-		GFF2678	0.42	+0.6
2,697,907	+		GFF2678	0.42	+0.5
2,697,911	+		GFF2678	0.42	+0.5
2,697,919	+		GFF2678	0.42	-1.3
2,697,928	-		GFF2678	0.43	+1.3
2,697,935	-		GFF2678	0.43	-0.5
2,697,953	-		GFF2678	0.44	-0.9
2,697,964	+		GFF2678	0.44	-0.6
2,697,964	+		GFF2678	0.44	+0.6
2,697,964	+		GFF2678	0.44	+0.2
2,697,964	+		GFF2678	0.44	-0.1
2,697,969	+		GFF2678	0.45	-1.3
2,697,969	+		GFF2678	0.45	+0.9
2,697,969	+		GFF2678	0.45	-1.9
2,697,969	+		GFF2678	0.45	-1.7
2,697,969	+		GFF2678	0.45	-0.4
2,697,969	+		GFF2678	0.45	-0.6
2,697,972	-		GFF2678	0.45	+0.2
2,697,972	-		GFF2678	0.45	-0.1
2,697,972	-		GFF2678	0.45	-1.0
2,697,972	-		GFF2678	0.45	+0.6
2,697,972	-		GFF2678	0.45	-0.9
2,697,972	-		GFF2678	0.45	+0.2
2,697,972	-		GFF2678	0.45	+0.1
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