Strain Fitness in Sphingobium sp. HT1-2 around GFF265

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
261,678	-				+0.6
261,678	-				+1.4
261,711	+		GFF262	0.19	+0.4
261,720	+		GFF262	0.22	+1.4
261,720	+		GFF262	0.22	-0.5
261,724	+		GFF262	0.23	+1.2
261,724	+		GFF262	0.23	-1.2
261,724	+		GFF262	0.23	-0.5
261,731	-		GFF262	0.25	+0.1
261,732	-		GFF262	0.26	-0.5
261,739	+		GFF262	0.28	-0.4
261,742	-		GFF262	0.29	+0.5
261,766	-		GFF262	0.37	-0.9
261,767	+		GFF262	0.37	-0.4
261,798	+		GFF262	0.48	-0.8
261,806	-		GFF262	0.50	-0.9
261,811	-		GFF262	0.52	-1.7
261,822	-		GFF262	0.55	+0.5
261,824	+		GFF262	0.56	+0.8
261,824	+		GFF262	0.56	+0.4
261,824	+		GFF262	0.56	-0.6
261,824	+		GFF262	0.56	-1.2
261,824	+		GFF262	0.56	-0.5
261,824	+		GFF262	0.56	-0.5
261,827	-		GFF262	0.57	+0.5
261,829	+		GFF262	0.58	+0.8
261,832	-		GFF262	0.59	-0.0
261,832	-		GFF262	0.59	-1.7
261,832	-		GFF262	0.59	-0.7
261,832	-		GFF262	0.59	-1.2
261,832	-		GFF262	0.59	-2.3
261,832	-		GFF262	0.59	-1.7
261,832	-		GFF262	0.59	-0.5
261,832	-		GFF262	0.59	+0.2
261,832	-		GFF262	0.59	-0.9
261,832	-		GFF262	0.59	-0.3
261,832	-		GFF262	0.59	+1.1
261,832	-		GFF262	0.59	+0.1
261,846	+		GFF262	0.63	+0.1
261,892	+		GFF262	0.79	-0.6
261,892	+		GFF262	0.79	+0.2
261,900	-		GFF262	0.81	+0.5
261,900	-		GFF262	0.81	-1.9
261,911	-		GFF262	0.85	-0.0
261,914	-		GFF262	0.86	-0.6
261,917	+		GFF262	0.87	-1.2
261,918	-		GFF262	0.87	-1.9
261,928	+				-0.9
261,928	+				-0.1
261,928	-				-0.2
261,937	+				-1.0
261,943	+				-1.4
261,945	-				-1.3
261,950	+				-2.4
261,950	+				-0.7
261,958	+				-1.3
261,958	+				+0.6
261,958	+				-1.9
261,958	-				-0.9
261,958	-				-0.1
261,958	-				-0.6
261,958	-				-1.7
261,960	+				+0.1
261,960	-				-0.2
261,966	-				+0.6
261,966	-				+0.1
261,966	-				+0.7
261,968	+				-0.3
261,976	-				+1.0
261,986	+				+0.9
261,986	+				+0.8
261,996	+				+0.1
261,996	+				-0.8
262,003	+				-0.3
262,003	+				-1.4
262,003	+				-1.5
262,003	+				-0.5
262,003	+				-1.1
262,004	-				-1.6
262,011	-				-1.7
262,011	-				-0.4
262,011	-				-0.2
262,011	-				+0.2
262,011	-				-1.2
262,011	-				-0.4
262,011	-				-1.9
262,011	-				-0.1
262,011	-				+0.2
262,024	-				+0.8
262,036	+				-1.0
262,036	-				-0.9
262,036	-				+1.0
262,049	-				+0.4
262,061	+				-0.2
262,066	+				-1.4
262,069	-				+0.8
262,071	-		GFF263	0.10	-1.6
262,071	-		GFF263	0.10	+0.3
262,073	+		GFF263	0.11	+0.6
262,073	+		GFF263	0.11	-0.9
262,074	-		GFF263	0.11	-0.6
262,078	+		GFF263	0.12	+0.4
262,078	+		GFF263	0.12	-0.0
262,081	-		GFF263	0.13	+1.0
262,081	-		GFF263	0.13	-1.2
262,086	-		GFF263	0.15	-1.0
262,086	-		GFF263	0.15	+1.9
262,086	-		GFF263	0.15	+0.6
262,087	+		GFF263	0.15	+0.6
262,088	+		GFF263	0.15	-0.4
262,096	-		GFF263	0.18	+0.4
262,099	-		GFF263	0.19	+0.2
262,112	+		GFF263	0.23	-1.4
262,132	-		GFF263	0.29	-1.4
262,132	-		GFF263	0.29	+1.2
262,134	+		GFF263	0.29	-0.6
262,156	+		GFF263	0.36	-2.8
262,158	+		GFF263	0.36	-0.7
262,158	+		GFF263	0.36	-1.0
262,158	+		GFF263	0.36	-1.2
262,164	-		GFF263	0.38	+0.1
262,166	-		GFF263	0.39	+1.2
262,166	-		GFF263	0.39	+0.5
262,166	-		GFF263	0.39	-0.5
262,166	-		GFF263	0.39	-0.0
262,166	-		GFF263	0.39	+0.8
262,177	-		GFF263	0.42	+0.6
262,178	+		GFF263	0.42	-0.3
262,213	+		GFF263	0.53	+0.2
262,233	-		GFF263	0.59	-1.4
262,234	-		GFF263	0.59	-0.6
262,234	-		GFF263	0.59	-0.9
262,235	-		GFF263	0.59	-0.9
262,244	-		GFF263	0.62	+0.8
262,250	+		GFF263	0.64	-1.2
262,250	+		GFF263	0.64	-0.7
262,250	+		GFF263	0.64	-0.8
262,254	+		GFF263	0.65	+1.1
262,258	-		GFF263	0.66	+0.1
262,258	-		GFF263	0.66	-1.5
262,258	-		GFF263	0.66	-1.8
262,258	-		GFF263	0.66	-0.1
262,258	-		GFF263	0.66	+0.3
262,345	+				-0.6
262,361	-				-1.6
262,369	-				-0.4
262,382	+				-0.7
262,396	+		GFF264	0.14	+0.1
262,398	+		GFF264	0.15	+0.1
262,398	+		GFF264	0.15	+0.1
262,398	+		GFF264	0.15	-0.5
262,398	-		GFF264	0.15	-0.7
262,405	+		GFF264	0.19	-2.0
262,405	+		GFF264	0.19	-0.7
262,406	+		GFF264	0.19	+0.1
262,406	+		GFF264	0.19	-1.0
262,406	+		GFF264	0.19	+0.1
262,406	+		GFF264	0.19	+1.3
262,406	+		GFF264	0.19	-1.0
262,406	+		GFF264	0.19	-1.1
262,406	-		GFF264	0.19	-0.1
262,408	+		GFF264	0.20	+1.6
262,414	-		GFF264	0.23	-0.4
262,414	-		GFF264	0.23	-0.4
262,414	-		GFF264	0.23	-0.5
262,414	-		GFF264	0.23	-0.1
262,414	-		GFF264	0.23	+0.1
262,414	-		GFF264	0.23	-0.5
262,414	-		GFF264	0.23	-0.1
262,414	-		GFF264	0.23	-1.8
262,414	-		GFF264	0.23	-0.8
262,414	-		GFF264	0.23	-0.9
262,416	-		GFF264	0.24	+1.1
262,416	-		GFF264	0.24	+0.4
262,416	-		GFF264	0.24	-1.5
262,416	-		GFF264	0.24	-0.8
262,436	+		GFF264	0.34	+0.5
262,441	+		GFF264	0.37	-0.3
262,441	+		GFF264	0.37	+0.3
262,441	+		GFF264	0.37	-0.5
262,441	+		GFF264	0.37	-2.2
262,441	+		GFF264	0.37	+0.8
262,446	+		GFF264	0.39	-2.5
262,448	+		GFF264	0.40	-0.6
262,448	+		GFF264	0.40	-0.2
262,448	+		GFF264	0.40	-1.1
262,448	+		GFF264	0.40	-0.9
262,448	+		GFF264	0.40	-1.5
262,449	+		GFF264	0.41	+1.2
262,449	-		GFF264	0.41	-0.1
262,449	-		GFF264	0.41	+0.5
262,449	-		GFF264	0.41	-0.2
262,449	-		GFF264	0.41	-1.2
262,449	-		GFF264	0.41	-0.3
262,449	-		GFF264	0.41	-0.9
262,449	-		GFF264	0.41	+1.6
262,449	-		GFF264	0.41	-2.4
262,456	-		GFF264	0.44	-0.8
262,456	-		GFF264	0.44	+0.1
262,463	-		GFF264	0.48	-1.4
262,465	+		GFF264	0.49	+1.6
262,465	+		GFF264	0.49	+0.5
262,465	+		GFF264	0.49	-1.7
262,465	+		GFF264	0.49	-0.6
262,465	+		GFF264	0.49	-0.6
262,465	+		GFF264	0.49	+0.5
262,465	+		GFF264	0.49	+1.1
262,473	-		GFF264	0.53	-0.2
262,473	-		GFF264	0.53	+0.3
262,473	-		GFF264	0.53	+0.1
262,473	-		GFF264	0.53	+0.7
262,473	-		GFF264	0.53	+0.5
262,473	-		GFF264	0.53	-2.2
262,473	-		GFF264	0.53	+0.7
262,473	-		GFF264	0.53	-0.6
262,475	-		GFF264	0.54	-0.7
262,480	+		GFF264	0.57	-1.8
262,483	-		GFF264	0.58	+0.6
262,485	+		GFF264	0.59	-0.3
262,488	-		GFF264	0.61	+1.2
262,489	+		GFF264	0.61	-1.0
262,498	-		GFF264	0.66	+0.5
262,510	-		GFF264	0.72	-1.2
262,519	+		GFF264	0.76	+1.2
262,533	+		GFF264	0.83	+0.3
262,533	-		GFF264	0.83	-1.2
262,535	+		GFF264	0.84	+1.1
262,542	-		GFF264	0.88	-2.0
262,543	-		GFF264	0.88	-1.5
262,544	+		GFF264	0.89	+1.5
262,544	+		GFF264	0.89	+0.1
262,544	+		GFF264	0.89	+1.0
262,544	+		GFF264	0.89	+0.4
262,550	+				-1.8
262,550	+				-1.4
262,550	+				-1.5
262,550	+				+0.6
262,552	-				+0.6
262,552	-				-0.2
262,552	-				+0.4
262,558	-				-0.7
262,558	-				-0.1
262,559	+				-0.9
262,559	+				+0.4
262,559	+				+0.5
262,559	+				-0.9
262,559	+				-0.9
262,567	-				-1.5
262,567	-				-0.9
262,567	-				-1.0
262,567	-				-0.0
262,567	-				-0.9
262,569	+				-0.7
262,577	-				-2.6
262,583	+				+0.2
262,583	+				+0.4
262,583	+				-1.6
262,583	+				-1.1
262,583	+				+0.2
262,591	-				-1.2
262,599	+				+0.6
262,599	+				-0.2
262,636	+				+1.7
262,640	+				-0.7
262,641	+				-0.6
262,641	+				+0.7
262,649	-				-1.8
262,649	-				+1.4
262,651	+				-0.9
262,659	+				-1.5
262,659	+				-2.3
262,659	+				+0.3
262,659	+				-0.1
262,659	+				-0.1
262,659	+				+0.4
262,659	+				+0.4
262,659	+				-2.9
262,659	+				-1.5
262,665	-				-0.4
262,667	-				+0.3
262,667	-				-2.2
262,667	-				+1.4
262,667	-				+0.0
262,667	-				-0.3
262,667	-				-1.0
262,667	-				-1.6
262,667	-				-2.3
262,667	-				+0.4
262,668	-				-0.5
262,679	-				-0.7
262,681	+				+0.6
262,681	+				+0.4
262,689	-				-1.4
262,689	-				-0.9
262,704	+				-1.0
262,704	-				-0.8
262,725	-				+0.6
262,729	-				-0.5
262,734	-				-0.2
262,739	-				+0.1
262,753	+		GFF265	0.10	+1.0
262,755	+		GFF265	0.10	-0.1
262,761	-		GFF265	0.11	+1.6
262,763	-		GFF265	0.11	-0.5
262,797	+		GFF265	0.16	+0.2
262,867	-		GFF265	0.25	+0.7
262,882	+		GFF265	0.27	-0.5
262,882	+		GFF265	0.27	-0.6
262,890	-		GFF265	0.28	+0.1
262,900	-		GFF265	0.30	-0.7
262,909	+		GFF265	0.31	+1.2
262,909	+		GFF265	0.31	+0.8
262,910	-		GFF265	0.31	+0.1
262,935	-		GFF265	0.34	+0.3
262,953	-		GFF265	0.37	-1.9
262,958	-		GFF265	0.37	-0.9
262,968	+		GFF265	0.39	-0.4
262,976	+		GFF265	0.40	-2.2
262,984	-		GFF265	0.41	+1.0
262,986	+		GFF265	0.41	-0.4
262,989	-		GFF265	0.41	-0.7
262,991	+		GFF265	0.42	+1.1
262,994	-		GFF265	0.42	+0.1
263,001	-		GFF265	0.43	+0.3
263,022	+		GFF265	0.46	-0.2
263,023	+		GFF265	0.46	+0.1
263,030	+		GFF265	0.47	+0.9
263,038	-		GFF265	0.48	-2.4
263,048	+		GFF265	0.49	-1.7
263,048	+		GFF265	0.49	+0.4
263,050	-		GFF265	0.50	-2.3
263,053	+		GFF265	0.50	+0.3
263,053	+		GFF265	0.50	+0.7
263,053	+		GFF265	0.50	-0.8
263,053	+		GFF265	0.50	-0.3
263,054	+		GFF265	0.50	-0.1
263,056	-		GFF265	0.50	+1.0
263,064	+		GFF265	0.51	-2.5
263,072	-		GFF265	0.52	-0.5
263,087	+		GFF265	0.54	-0.3
263,095	-		GFF265	0.56	-1.5
263,098	+		GFF265	0.56	+0.2
263,131	+		GFF265	0.60	-0.8
263,131	+		GFF265	0.60	+0.1
263,131	+		GFF265	0.60	+0.3
263,138	+		GFF265	0.61	+0.2
263,157	+		GFF265	0.64	+1.1
263,161	+		GFF265	0.64	+0.5
263,161	+		GFF265	0.64	+0.4
263,161	+		GFF265	0.64	+0.1
263,169	-		GFF265	0.65	+0.3
263,169	-		GFF265	0.65	+1.1
263,178	+		GFF265	0.67	-0.2
263,178	+		GFF265	0.67	-1.5
263,179	-		GFF265	0.67	-0.4
263,180	+		GFF265	0.67	-0.1
263,186	-		GFF265	0.68	-1.2
263,186	-		GFF265	0.68	-0.6
263,186	-		GFF265	0.68	-0.9
263,186	-		GFF265	0.68	+0.5
263,193	-		GFF265	0.69	-0.9
263,209	-		GFF265	0.71	+1.3
263,229	-		GFF265	0.73	+0.8
263,229	-		GFF265	0.73	-1.2
263,282	+		GFF265	0.80	+1.2
263,294	+		GFF265	0.82	-0.0
263,294	+		GFF265	0.82	-1.0
263,294	+		GFF265	0.82	-0.4
263,297	-		GFF265	0.82	+0.4
263,300	-		GFF265	0.83	-2.3
263,302	-		GFF265	0.83	-1.3
263,302	-		GFF265	0.83	+0.2
263,302	-		GFF265	0.83	-0.5
263,302	-		GFF265	0.83	-0.7
263,323	-		GFF265	0.86	-0.0
263,324	+		GFF265	0.86	-2.9
263,329	+		GFF265	0.87	+0.8
263,329	+		GFF265	0.87	-0.0
263,329	+		GFF265	0.87	-0.4
263,337	-		GFF265	0.88	-1.2
263,337	-		GFF265	0.88	-0.5
263,337	-		GFF265	0.88	-0.1
263,337	-		GFF265	0.88	+1.1
263,337	-		GFF265	0.88	-0.3
263,337	-		GFF265	0.88	-2.9
263,337	-		GFF265	0.88	+0.8
263,371	+				+0.6
263,389	+				+0.6
263,389	+				+0.8
263,394	+				+1.0
263,394	+				-2.1
263,397	-				+1.4
263,399	+				-0.4
263,422	-				-1.5
263,422	-				+0.1
263,424	+				-0.5
263,424	+				+0.2
263,426	+				+0.2
263,432	-				+0.6
263,446	+				-0.1
263,470	+				-0.9
263,470	+				-0.8
263,470	+				+1.6
263,470	+				-0.8
263,470	+				+0.2
263,478	-		GFF266	0.12	-0.4
263,478	-		GFF266	0.12	-1.2
263,478	-		GFF266	0.12	-0.1
263,478	-		GFF266	0.12	-1.4
263,478	-		GFF266	0.12	+0.0
263,482	+		GFF266	0.14	+0.7
263,504	-		GFF266	0.23	-1.5
263,509	-		GFF266	0.25	+0.0
263,524	-		GFF266	0.32	+0.4
263,525	-		GFF266	0.32	-0.2
263,548	+		GFF266	0.42	-0.2
263,548	+		GFF266	0.42	-0.3
263,554	+		GFF266	0.44	-1.4
263,554	+		GFF266	0.44	-0.7
263,554	+		GFF266	0.44	-0.9
263,561	+		GFF266	0.47	-0.1
263,562	-		GFF266	0.48	+1.2
263,562	-		GFF266	0.48	-1.3
263,562	-		GFF266	0.48	-1.8
263,562	-		GFF266	0.48	+0.3
263,562	-		GFF266	0.48	+1.1
263,562	-		GFF266	0.48	-1.3
263,566	+		GFF266	0.49	+0.6
263,566	+		GFF266	0.49	-1.2
263,568	+		GFF266	0.50	-0.3
263,568	+		GFF266	0.50	-0.8
263,574	-		GFF266	0.53	-0.3
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