Strain Fitness in Sphingobium sp. HT1-2 around GFF2643

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,662,101	+				+0.2
2,662,106	+				-0.8
2,662,106	+				+0.2
2,662,106	+				+0.6
2,662,106	+				+0.6
2,662,108	-				-0.5
2,662,129	-				+1.9
2,662,129	-				-1.4
2,662,129	-				+0.6
2,662,135	-		GFF2642	0.10	-0.7
2,662,140	-		GFF2642	0.11	+0.1
2,662,140	-		GFF2642	0.11	+0.4
2,662,140	-		GFF2642	0.11	+0.8
2,662,141	+		GFF2642	0.11	-0.0
2,662,149	-		GFF2642	0.12	+0.8
2,662,149	-		GFF2642	0.12	-0.9
2,662,170	-		GFF2642	0.14	-0.5
2,662,193	-		GFF2642	0.16	+0.8
2,662,193	-		GFF2642	0.16	+1.8
2,662,193	-		GFF2642	0.16	+0.8
2,662,216	+		GFF2642	0.19	+0.3
2,662,216	+		GFF2642	0.19	-0.4
2,662,218	+		GFF2642	0.19	-0.8
2,662,218	+		GFF2642	0.19	+0.2
2,662,218	+		GFF2642	0.19	-1.5
2,662,218	+		GFF2642	0.19	+1.0
2,662,218	+		GFF2642	0.19	-1.2
2,662,218	+		GFF2642	0.19	-0.1
2,662,221	+		GFF2642	0.19	-1.9
2,662,221	-		GFF2642	0.19	-0.8
2,662,224	-		GFF2642	0.20	+0.3
2,662,226	-		GFF2642	0.20	-0.4
2,662,226	-		GFF2642	0.20	+0.6
2,662,226	-		GFF2642	0.20	+0.6
2,662,226	-		GFF2642	0.20	-0.2
2,662,245	+		GFF2642	0.22	-1.6
2,662,264	-		GFF2642	0.24	+0.1
2,662,264	-		GFF2642	0.24	+1.1
2,662,301	-		GFF2642	0.27	-1.4
2,662,310	+		GFF2642	0.28	-0.5
2,662,320	-		GFF2642	0.29	+1.2
2,662,325	-		GFF2642	0.30	-0.1
2,662,329	+		GFF2642	0.30	-1.2
2,662,368	+		GFF2642	0.34	+0.2
2,662,384	-		GFF2642	0.36	-1.2
2,662,415	+		GFF2642	0.39	+0.9
2,662,415	+		GFF2642	0.39	+0.4
2,662,415	+		GFF2642	0.39	+1.0
2,662,423	-		GFF2642	0.40	-1.6
2,662,438	+		GFF2642	0.41	-2.7
2,662,438	+		GFF2642	0.41	+0.9
2,662,446	-		GFF2642	0.42	-0.6
2,662,480	+		GFF2642	0.46	+1.1
2,662,481	-		GFF2642	0.46	+0.9
2,662,492	+		GFF2642	0.47	-0.3
2,662,495	+		GFF2642	0.47	-0.4
2,662,500	-		GFF2642	0.48	+0.5
2,662,503	-		GFF2642	0.48	-0.1
2,662,505	-		GFF2642	0.48	+0.4
2,662,535	+		GFF2642	0.51	+1.1
2,662,561	+		GFF2642	0.54	-1.4
2,662,597	-		GFF2642	0.58	-1.9
2,662,598	+		GFF2642	0.58	-0.5
2,662,601	-		GFF2642	0.58	+0.1
2,662,606	-		GFF2642	0.59	+0.2
2,662,606	-		GFF2642	0.59	-0.7
2,662,611	-		GFF2642	0.59	-0.6
2,662,632	+		GFF2642	0.61	-1.7
2,662,634	-		GFF2642	0.61	+0.9
2,662,642	+		GFF2642	0.62	+0.5
2,662,642	+		GFF2642	0.62	+0.1
2,662,648	+		GFF2642	0.63	+0.2
2,662,653	+		GFF2642	0.63	-0.3
2,662,654	-		GFF2642	0.63	-1.5
2,662,656	-		GFF2642	0.64	-0.3
2,662,656	-		GFF2642	0.64	-1.2
2,662,658	+		GFF2642	0.64	-1.8
2,662,661	-		GFF2642	0.64	-0.7
2,662,661	-		GFF2642	0.64	-1.1
2,662,667	+		GFF2642	0.65	-1.9
2,662,677	-		GFF2642	0.66	+0.1
2,662,693	+		GFF2642	0.67	+0.3
2,662,702	+		GFF2642	0.68	-0.9
2,662,712	+		GFF2642	0.69	-0.5
2,662,712	+		GFF2642	0.69	+0.3
2,662,720	-		GFF2642	0.70	-1.0
2,662,741	-		GFF2642	0.72	+0.3
2,662,747	+		GFF2642	0.73	-0.6
2,662,772	+		GFF2642	0.75	+1.1
2,662,786	+		GFF2642	0.77	+0.3
2,662,791	+		GFF2642	0.77	-0.3
2,662,817	-		GFF2642	0.80	-0.6
2,662,855	+		GFF2642	0.84	-0.4
2,662,858	+		GFF2642	0.84	-1.8
2,662,858	-		GFF2642	0.84	-1.8
2,662,860	+		GFF2642	0.84	-0.0
2,662,863	-		GFF2642	0.85	-0.5
2,662,863	-		GFF2642	0.85	-0.4
2,662,868	-		GFF2642	0.85	+0.4
2,662,868	-		GFF2642	0.85	+0.2
2,662,873	-		GFF2642	0.86	+0.3
2,662,875	+		GFF2642	0.86	+0.7
2,662,880	+		GFF2642	0.86	+0.2
2,662,880	+		GFF2642	0.86	+0.1
2,662,882	+		GFF2642	0.87	-0.4
2,662,882	+		GFF2642	0.87	-0.9
2,662,883	-		GFF2642	0.87	-1.0
2,662,887	+		GFF2642	0.87	-0.6
2,662,888	-		GFF2642	0.87	-0.8
2,662,983	-				+1.1
2,662,995	-				-0.5
2,663,003	-				-0.8
2,663,035	+				+1.2
2,663,043	-				-2.0
2,663,073	+				+0.0
2,663,098	+				-0.1
2,663,098	+				+0.3
2,663,105	-				-0.6
2,663,106	-				+0.3
2,663,106	-				-0.4
2,663,106	-				-1.6
2,663,111	-				+0.4
2,663,112	+				-0.6
2,663,112	+				-0.5
2,663,125	+				+1.1
2,663,125	+				+1.3
2,663,125	+				-0.2
2,663,155	+				-1.2
2,663,157	-				+0.5
2,663,172	-				-0.6
2,663,172	-				-0.9
2,663,172	-				+0.4
2,663,188	+				-0.4
2,663,202	+				-0.4
2,663,209	-				+0.5
2,663,215	+				+0.7
2,663,215	+				-1.4
2,663,215	+				+1.9
2,663,215	+				+1.7
2,663,215	+				+2.6
2,663,215	+				-1.1
2,663,215	+				-1.2
2,663,215	+				-2.1
2,663,220	+		GFF2643	0.10	-1.2
2,663,223	-		GFF2643	0.10	-0.5
2,663,223	-		GFF2643	0.10	-1.5
2,663,223	-		GFF2643	0.10	-0.9
2,663,223	-		GFF2643	0.10	-0.6
2,663,223	-		GFF2643	0.10	-0.0
2,663,223	-		GFF2643	0.10	+2.0
2,663,228	-		GFF2643	0.11	-0.7
2,663,235	+		GFF2643	0.11	-0.4
2,663,245	+		GFF2643	0.12	-0.3
2,663,245	+		GFF2643	0.12	-0.7
2,663,245	+		GFF2643	0.12	-0.6
2,663,245	+		GFF2643	0.12	+0.3
2,663,259	-		GFF2643	0.13	+0.3
2,663,277	+		GFF2643	0.15	+0.3
2,663,283	+		GFF2643	0.15	+0.8
2,663,285	-		GFF2643	0.16	-0.5
2,663,291	-		GFF2643	0.16	-1.4
2,663,302	-		GFF2643	0.17	+1.1
2,663,312	-		GFF2643	0.18	+1.3
2,663,383	+		GFF2643	0.24	+1.6
2,663,383	+		GFF2643	0.24	+0.1
2,663,383	+		GFF2643	0.24	-1.9
2,663,383	+		GFF2643	0.24	-0.2
2,663,401	+		GFF2643	0.25	-0.2
2,663,416	-		GFF2643	0.27	+0.3
2,663,418	+		GFF2643	0.27	-3.2
2,663,418	+		GFF2643	0.27	-0.5
2,663,418	+		GFF2643	0.27	+0.7
2,663,418	+		GFF2643	0.27	-2.2
2,663,418	+		GFF2643	0.27	-0.7
2,663,418	+		GFF2643	0.27	-1.2
2,663,418	+		GFF2643	0.27	+0.5
2,663,429	+		GFF2643	0.28	+0.7
2,663,448	+		GFF2643	0.29	-0.4
2,663,449	+		GFF2643	0.29	-1.0
2,663,465	-		GFF2643	0.31	-0.2
2,663,479	+		GFF2643	0.32	+0.6
2,663,492	+		GFF2643	0.33	-0.6
2,663,497	-		GFF2643	0.33	-0.4
2,663,497	-		GFF2643	0.33	-0.1
2,663,497	-		GFF2643	0.33	-0.9
2,663,497	-		GFF2643	0.33	-0.4
2,663,508	-		GFF2643	0.34	+1.1
2,663,513	-		GFF2643	0.35	-1.0
2,663,560	-		GFF2643	0.39	-1.6
2,663,574	-		GFF2643	0.40	-1.2
2,663,581	+		GFF2643	0.40	-1.1
2,663,584	-		GFF2643	0.41	+0.1
2,663,598	+		GFF2643	0.42	-0.2
2,663,598	-		GFF2643	0.42	-0.1
2,663,604	-		GFF2643	0.42	+0.3
2,663,611	-		GFF2643	0.43	-3.0
2,663,616	-		GFF2643	0.43	+0.6
2,663,616	-		GFF2643	0.43	-0.4
2,663,624	-		GFF2643	0.44	-0.4
2,663,634	-		GFF2643	0.45	-1.0
2,663,639	-		GFF2643	0.45	-0.1
2,663,641	+		GFF2643	0.45	-0.4
2,663,641	+		GFF2643	0.45	-1.2
2,663,641	+		GFF2643	0.45	-0.1
2,663,644	-		GFF2643	0.46	-0.6
2,663,649	-		GFF2643	0.46	+0.3
2,663,661	-		GFF2643	0.47	+0.0
2,663,682	-		GFF2643	0.49	-0.4
2,663,685	-		GFF2643	0.49	-1.4
2,663,715	+		GFF2643	0.52	-3.1
2,663,715	+		GFF2643	0.52	-0.8
2,663,715	+		GFF2643	0.52	-0.1
2,663,715	+		GFF2643	0.52	+0.2
2,663,715	+		GFF2643	0.52	+1.1
2,663,723	-		GFF2643	0.52	-1.6
2,663,723	-		GFF2643	0.52	+0.3
2,663,723	-		GFF2643	0.52	-1.9
2,663,726	+		GFF2643	0.53	+0.3
2,663,727	+		GFF2643	0.53	-0.5
2,663,742	-		GFF2643	0.54	-0.3
2,663,742	-		GFF2643	0.54	-0.5
2,663,743	-		GFF2643	0.54	-1.2
2,663,755	+		GFF2643	0.55	+0.5
2,663,755	+		GFF2643	0.55	-0.2
2,663,762	-		GFF2643	0.56	+0.8
2,663,763	-		GFF2643	0.56	-0.7
2,663,763	-		GFF2643	0.56	-1.3
2,663,768	-		GFF2643	0.56	+0.5
2,663,768	-		GFF2643	0.56	-0.0
2,663,768	-		GFF2643	0.56	-0.3
2,663,768	-		GFF2643	0.56	-0.1
2,663,770	+		GFF2643	0.56	+0.3
2,663,785	+		GFF2643	0.58	-0.9
2,663,788	-		GFF2643	0.58	+0.1
2,663,793	-		GFF2643	0.58	-0.5
2,663,793	-		GFF2643	0.58	-0.9
2,663,810	-		GFF2643	0.60	-0.6
2,663,826	+		GFF2643	0.61	+0.2
2,663,836	+		GFF2643	0.62	-1.6
2,663,836	+		GFF2643	0.62	-0.6
2,663,836	+		GFF2643	0.62	-0.1
2,663,844	-		GFF2643	0.62	-0.5
2,663,844	-		GFF2643	0.62	+0.7
2,663,844	-		GFF2643	0.62	-1.2
2,663,844	-		GFF2643	0.62	+0.6
2,663,853	+		GFF2643	0.63	-2.1
2,663,861	-		GFF2643	0.64	-0.0
2,663,874	+		GFF2643	0.65	-0.3
2,663,874	+		GFF2643	0.65	-2.2
2,663,874	+		GFF2643	0.65	-0.4
2,663,874	+		GFF2643	0.65	+1.8
2,663,882	-		GFF2643	0.66	-0.5
2,663,882	-		GFF2643	0.66	-0.9
2,663,882	-		GFF2643	0.66	+0.1
2,663,882	-		GFF2643	0.66	-0.2
2,663,882	-		GFF2643	0.66	+0.6
2,663,882	-		GFF2643	0.66	+0.6
2,663,882	-		GFF2643	0.66	-0.2
2,663,893	+		GFF2643	0.67	-0.3
2,663,917	+		GFF2643	0.69	-0.9
2,663,925	-		GFF2643	0.69	+0.2
2,663,930	-		GFF2643	0.70	-0.2
2,663,972	+		GFF2643	0.73	-0.7
2,663,973	-		GFF2643	0.73	-0.2
2,664,015	+		GFF2643	0.77	-0.9
2,664,015	+		GFF2643	0.77	-1.4
2,664,016	-		GFF2643	0.77	+0.9
2,664,017	-		GFF2643	0.77	-0.2
2,664,034	+		GFF2643	0.78	-0.9
2,664,057	+		GFF2643	0.80	-0.4
2,664,086	+		GFF2643	0.83	-1.8
2,664,094	-		GFF2643	0.83	+0.7
2,664,136	+		GFF2643	0.87	-0.8
2,664,145	+		GFF2643	0.88	-1.8
2,664,146	+		GFF2643	0.88	+0.4
2,664,154	-		GFF2643	0.88	+0.6
2,664,165	-		GFF2643	0.89	-0.7
2,664,165	-		GFF2643	0.89	+0.3
2,664,165	-		GFF2643	0.89	-0.2
2,664,169	+		GFF2643	0.90	+0.8
2,664,169	+		GFF2643	0.90	+0.8
2,664,169	-		GFF2643	0.90	+0.2
2,664,244	+				-0.3
2,664,256	-				+0.5
2,664,271	+				+0.1
2,664,271	+				-2.5
2,664,271	+				-0.6
2,664,271	+				-1.6
2,664,279	-				-2.2
2,664,279	-				-1.2
2,664,280	+				+0.8
2,664,281	-				-1.2
2,664,316	+				-1.0
2,664,324	-				-1.2
2,664,348	-				-0.5
2,664,348	-				+0.6
2,664,367	+				+0.8
2,664,375	-				+0.0
2,664,375	-				+0.8
2,664,380	+				-2.2
2,664,380	+				+0.2
2,664,380	+				-1.4
2,664,388	-				-0.9
2,664,388	-				-0.5
2,664,388	-				-0.2
2,664,423	+				-0.8
2,664,423	+				-1.8
2,664,447	+				-1.2
2,664,448	+				-0.1
2,664,493	+				-1.5
2,664,511	-				+1.3
2,664,515	+				-1.2
2,664,523	-				+0.7
2,664,546	-		GFF2644	0.12	-0.9
2,664,582	+		GFF2644	0.17	-0.7
2,664,582	+		GFF2644	0.17	-0.5
2,664,589	+		GFF2644	0.18	-0.2
2,664,590	-		GFF2644	0.18	-1.7
2,664,590	-		GFF2644	0.18	-0.9
2,664,590	-		GFF2644	0.18	+1.0
2,664,590	-		GFF2644	0.18	-1.0
2,664,590	-		GFF2644	0.18	-0.1
2,664,592	+		GFF2644	0.18	-0.1
2,664,597	-		GFF2644	0.19	-0.5
2,664,601	+		GFF2644	0.19	-0.7
2,664,607	+		GFF2644	0.20	-2.2
2,664,628	-		GFF2644	0.23	+0.3
2,664,639	+		GFF2644	0.25	-0.8
2,664,654	+		GFF2644	0.27	+1.0
2,664,654	+		GFF2644	0.27	-0.3
2,664,666	+		GFF2644	0.28	+1.5
2,664,668	+		GFF2644	0.29	+0.4
2,664,676	-		GFF2644	0.30	+0.8
2,664,699	+		GFF2644	0.33	+0.2
2,664,707	+		GFF2644	0.34	+1.2
2,664,707	+		GFF2644	0.34	+1.2
2,664,707	-		GFF2644	0.34	+1.3
2,664,709	-		GFF2644	0.34	-0.2
2,664,714	-		GFF2644	0.35	+0.2
2,664,725	+		GFF2644	0.37	-0.9
2,664,725	+		GFF2644	0.37	+0.3
2,664,730	+		GFF2644	0.37	-1.4
2,664,730	+		GFF2644	0.37	-0.4
2,664,733	-		GFF2644	0.38	+0.2
2,664,733	-		GFF2644	0.38	+0.3
2,664,738	-		GFF2644	0.39	+1.1
2,664,738	-		GFF2644	0.39	-1.9
2,664,744	-		GFF2644	0.39	-2.1
2,664,744	-		GFF2644	0.39	-0.6
2,664,744	-		GFF2644	0.39	-0.2
2,664,744	-		GFF2644	0.39	+0.2
2,664,752	+		GFF2644	0.40	-1.0
2,664,791	+		GFF2644	0.46	-0.5
2,664,799	-		GFF2644	0.47	-0.4
2,664,858	+		GFF2644	0.55	+0.9
2,664,858	+		GFF2644	0.55	+0.3
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