Strain Fitness in Sphingobium sp. HT1-2 around GFF2641

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,659,667	-		GFF2638	0.80	-1.8
2,659,674	+		GFF2638	0.81	+0.2
2,659,687	+		GFF2638	0.82	+0.2
2,659,696	-		GFF2638	0.82	-2.4
2,659,712	+		GFF2638	0.83	+0.2
2,659,712	+		GFF2638	0.83	+0.6
2,659,712	+		GFF2638	0.83	-1.4
2,659,712	+		GFF2638	0.83	-3.1
2,659,712	+		GFF2638	0.83	-1.0
2,659,712	+		GFF2638	0.83	+0.2
2,659,712	+		GFF2638	0.83	-0.9
2,659,712	+		GFF2638	0.83	+0.8
2,659,712	+		GFF2638	0.83	-1.4
2,659,712	+		GFF2638	0.83	-1.2
2,659,712	+		GFF2638	0.83	+1.0
2,659,712	+		GFF2638	0.83	+0.7
2,659,720	-		GFF2638	0.84	+0.6
2,659,720	-		GFF2638	0.84	-0.8
2,659,720	-		GFF2638	0.84	-0.9
2,659,720	-		GFF2638	0.84	+0.1
2,659,720	-		GFF2638	0.84	+0.5
2,659,720	-		GFF2638	0.84	+0.4
2,659,720	-		GFF2638	0.84	-1.2
2,659,722	+		GFF2638	0.84	+0.8
2,659,728	+		GFF2638	0.84	-0.1
2,659,728	+		GFF2638	0.84	-2.0
2,659,741	-		GFF2638	0.85	-1.5
2,659,746	-		GFF2638	0.86	+0.5
2,659,751	+		GFF2638	0.86	-1.4
2,659,764	+		GFF2638	0.87	+0.7
2,659,772	-		GFF2638	0.87	-1.1
2,659,772	-		GFF2638	0.87	-0.1
2,659,772	-		GFF2638	0.87	-0.1
2,659,786	+		GFF2638	0.88	+0.1
2,659,786	+		GFF2638	0.88	+0.3
2,659,791	+		GFF2638	0.89	+0.8
2,659,794	-		GFF2638	0.89	-0.5
2,659,795	-		GFF2638	0.89	+0.1
2,659,799	-		GFF2638	0.89	-0.4
2,659,808	+		GFF2638	0.90	-0.6
2,659,810	+		GFF2638	0.90	+0.9
2,659,834	+				-0.4
2,659,861	+				+0.7
2,659,897	-				+0.6
2,659,903	-				+0.2
2,659,903	-				-0.6
2,659,908	+				+0.6
2,659,945	-				+1.1
2,659,951	-				-1.4
2,659,961	-				+0.5
2,660,039	+				-0.9
2,660,044	+				-0.1
2,660,044	+				-0.5
2,660,044	+				+0.8
2,660,044	+				-1.0
2,660,044	+				-0.0
2,660,044	+				-0.4
2,660,044	+				-0.5
2,660,044	+				-1.3
2,660,047	-				-1.5
2,660,049	+				-2.4
2,660,052	-				-0.6
2,660,052	-				-2.1
2,660,059	+		GFF2639	0.11	-0.8
2,660,066	-		GFF2639	0.14	-1.5
2,660,082	+		GFF2639	0.20	+0.1
2,660,090	-		GFF2639	0.24	+0.3
2,660,090	-		GFF2639	0.24	-2.0
2,660,090	-		GFF2639	0.24	-1.1
2,660,090	-		GFF2639	0.24	-0.8
2,660,090	-		GFF2639	0.24	+0.8
2,660,090	-		GFF2639	0.24	+0.1
2,660,090	-		GFF2639	0.24	+0.9
2,660,116	+		GFF2639	0.34	+0.4
2,660,124	-		GFF2639	0.37	-0.4
2,660,129	-		GFF2639	0.39	-0.9
2,660,129	-		GFF2639	0.39	-0.8
2,660,140	+		GFF2639	0.44	-1.2
2,660,238	-		GFF2639	0.84	-0.0
2,660,280	+				+0.3
2,660,297	+				-1.1
2,660,297	+				-1.2
2,660,316	-		GFF2640	0.14	-0.0
2,660,339	+		GFF2640	0.22	-2.3
2,660,339	+		GFF2640	0.22	-0.4
2,660,339	+		GFF2640	0.22	+0.4
2,660,339	+		GFF2640	0.22	+0.7
2,660,347	-		GFF2640	0.25	-0.3
2,660,347	-		GFF2640	0.25	-1.6
2,660,347	-		GFF2640	0.25	-0.9
2,660,365	-		GFF2640	0.31	-1.1
2,660,391	-		GFF2640	0.39	+0.1
2,660,415	+		GFF2640	0.47	-0.5
2,660,434	-		GFF2640	0.54	+1.5
2,660,434	-		GFF2640	0.54	+0.1
2,660,435	-		GFF2640	0.54	-1.1
2,660,435	-		GFF2640	0.54	-1.7
2,660,437	+		GFF2640	0.55	-0.7
2,660,442	+		GFF2640	0.57	+0.6
2,660,445	-		GFF2640	0.58	-1.1
2,660,445	-		GFF2640	0.58	+0.5
2,660,447	+		GFF2640	0.58	+0.2
2,660,483	+		GFF2640	0.70	-0.6
2,660,492	+		GFF2640	0.73	-0.5
2,660,553	-				+0.8
2,660,553	-				-1.9
2,660,558	-				+0.2
2,660,572	-				+0.4
2,660,579	-				-0.4
2,660,579	-				-0.6
2,660,579	-				+1.7
2,660,583	+				+0.6
2,660,590	-				-0.3
2,660,626	-				+1.2
2,660,665	+				-0.2
2,660,665	+				+0.0
2,660,673	-				+0.4
2,660,691	-				-1.3
2,660,711	+				+1.2
2,660,738	-				-0.5
2,660,751	+				-0.8
2,660,757	+				-1.3
2,660,757	+				-0.3
2,660,757	+				-1.2
2,660,759	-				-0.4
2,660,765	-				+0.1
2,660,765	-				-0.8
2,660,765	-				+0.8
2,660,801	+		GFF2641	0.11	-1.8
2,660,805	+		GFF2641	0.11	-0.4
2,660,810	-		GFF2641	0.11	-0.2
2,660,811	-		GFF2641	0.11	-0.8
2,660,814	+		GFF2641	0.12	+0.2
2,660,823	+		GFF2641	0.12	-0.1
2,660,828	+		GFF2641	0.13	+1.1
2,660,828	+		GFF2641	0.13	-1.2
2,660,828	+		GFF2641	0.13	-1.4
2,660,828	+		GFF2641	0.13	+0.3
2,660,828	+		GFF2641	0.13	+0.9
2,660,828	+		GFF2641	0.13	-1.1
2,660,836	-		GFF2641	0.13	-0.2
2,660,836	-		GFF2641	0.13	+0.8
2,660,836	-		GFF2641	0.13	-0.3
2,660,836	-		GFF2641	0.13	-0.8
2,660,836	-		GFF2641	0.13	-2.4
2,660,836	-		GFF2641	0.13	-1.4
2,660,844	-		GFF2641	0.14	-0.5
2,660,866	+		GFF2641	0.15	-0.9
2,660,868	+		GFF2641	0.16	-0.2
2,660,868	+		GFF2641	0.16	-0.1
2,660,868	+		GFF2641	0.16	-1.6
2,660,868	+		GFF2641	0.16	-1.2
2,660,876	-		GFF2641	0.16	+0.1
2,660,876	-		GFF2641	0.16	-1.7
2,660,876	-		GFF2641	0.16	+1.3
2,660,889	+		GFF2641	0.17	+0.4
2,660,921	-		GFF2641	0.19	+0.0
2,660,939	-		GFF2641	0.21	-1.6
2,660,948	+		GFF2641	0.21	-0.9
2,660,983	-		GFF2641	0.24	+0.3
2,660,983	-		GFF2641	0.24	-1.2
2,660,991	-		GFF2641	0.25	+1.7
2,660,998	+		GFF2641	0.25	-0.7
2,661,012	+		GFF2641	0.26	+0.7
2,661,012	+		GFF2641	0.26	-0.5
2,661,020	-		GFF2641	0.27	-1.5
2,661,020	-		GFF2641	0.27	-1.4
2,661,022	+		GFF2641	0.27	-0.8
2,661,025	-		GFF2641	0.27	-2.1
2,661,025	-		GFF2641	0.27	-1.2
2,661,027	+		GFF2641	0.27	-0.1
2,661,027	-		GFF2641	0.27	-0.5
2,661,030	-		GFF2641	0.27	+0.6
2,661,031	+		GFF2641	0.27	-0.8
2,661,031	+		GFF2641	0.27	-0.1
2,661,039	+		GFF2641	0.28	-1.2
2,661,039	-		GFF2641	0.28	+0.1
2,661,044	+		GFF2641	0.28	-1.2
2,661,052	+		GFF2641	0.29	+0.6
2,661,060	-		GFF2641	0.30	+0.8
2,661,065	-		GFF2641	0.30	+0.1
2,661,075	+		GFF2641	0.31	+1.4
2,661,076	+		GFF2641	0.31	-0.1
2,661,076	+		GFF2641	0.31	+0.8
2,661,076	+		GFF2641	0.31	-0.7
2,661,076	+		GFF2641	0.31	+0.3
2,661,084	-		GFF2641	0.31	-0.2
2,661,084	-		GFF2641	0.31	-1.4
2,661,084	-		GFF2641	0.31	-0.7
2,661,091	+		GFF2641	0.32	-0.3
2,661,096	+		GFF2641	0.32	-0.7
2,661,099	-		GFF2641	0.32	-0.7
2,661,103	+		GFF2641	0.33	+1.1
2,661,122	-		GFF2641	0.34	+0.1
2,661,125	+		GFF2641	0.34	+0.3
2,661,129	+		GFF2641	0.35	+0.1
2,661,133	-		GFF2641	0.35	+1.0
2,661,143	+		GFF2641	0.36	+0.4
2,661,168	+		GFF2641	0.37	+0.3
2,661,168	+		GFF2641	0.37	-1.1
2,661,183	+		GFF2641	0.38	+1.3
2,661,183	+		GFF2641	0.38	-0.4
2,661,191	+		GFF2641	0.39	-0.1
2,661,191	-		GFF2641	0.39	+0.4
2,661,191	-		GFF2641	0.39	-1.1
2,661,192	-		GFF2641	0.39	-0.7
2,661,195	-		GFF2641	0.39	-0.4
2,661,211	-		GFF2641	0.41	-1.0
2,661,213	+		GFF2641	0.41	+0.7
2,661,213	+		GFF2641	0.41	-1.2
2,661,213	+		GFF2641	0.41	+0.7
2,661,213	+		GFF2641	0.41	+0.0
2,661,213	+		GFF2641	0.41	+0.6
2,661,213	+		GFF2641	0.41	-2.3
2,661,213	+		GFF2641	0.41	+0.3
2,661,221	-		GFF2641	0.41	-1.0
2,661,221	-		GFF2641	0.41	+0.2
2,661,221	-		GFF2641	0.41	+1.8
2,661,247	+		GFF2641	0.43	-0.7
2,661,247	+		GFF2641	0.43	-2.8
2,661,247	+		GFF2641	0.43	+0.4
2,661,247	+		GFF2641	0.43	-0.4
2,661,247	+		GFF2641	0.43	+0.1
2,661,247	+		GFF2641	0.43	-0.8
2,661,247	+		GFF2641	0.43	+2.0
2,661,247	+		GFF2641	0.43	-0.4
2,661,247	+		GFF2641	0.43	-0.8
2,661,247	+		GFF2641	0.43	-0.9
2,661,254	+		GFF2641	0.44	-0.5
2,661,255	-		GFF2641	0.44	-0.2
2,661,255	-		GFF2641	0.44	+0.4
2,661,255	-		GFF2641	0.44	-0.1
2,661,255	-		GFF2641	0.44	-2.4
2,661,255	-		GFF2641	0.44	-0.8
2,661,265	+		GFF2641	0.44	+0.0
2,661,271	+		GFF2641	0.45	-0.3
2,661,271	+		GFF2641	0.45	+1.1
2,661,279	-		GFF2641	0.45	-0.1
2,661,285	-		GFF2641	0.46	-1.2
2,661,292	-		GFF2641	0.46	-2.2
2,661,312	-		GFF2641	0.48	+1.0
2,661,323	+		GFF2641	0.49	+0.9
2,661,331	-		GFF2641	0.49	-0.1
2,661,334	+		GFF2641	0.49	-0.4
2,661,335	+		GFF2641	0.50	-1.3
2,661,336	-		GFF2641	0.50	-1.7
2,661,341	-		GFF2641	0.50	-0.1
2,661,342	-		GFF2641	0.50	-1.7
2,661,343	-		GFF2641	0.50	-0.9
2,661,349	+		GFF2641	0.51	-0.9
2,661,353	-		GFF2641	0.51	-0.1
2,661,357	-		GFF2641	0.51	+0.6
2,661,370	+		GFF2641	0.52	+0.4
2,661,375	-		GFF2641	0.52	-0.6
2,661,378	-		GFF2641	0.53	-0.0
2,661,384	+		GFF2641	0.53	-0.4
2,661,432	+		GFF2641	0.57	-0.8
2,661,470	+		GFF2641	0.59	-0.5
2,661,478	-		GFF2641	0.60	-1.0
2,661,488	-		GFF2641	0.61	+0.0
2,661,508	-		GFF2641	0.62	+1.1
2,661,513	-		GFF2641	0.62	-0.7
2,661,516	+		GFF2641	0.63	-0.9
2,661,527	+		GFF2641	0.63	-2.2
2,661,534	+		GFF2641	0.64	-0.7
2,661,534	+		GFF2641	0.64	-1.0
2,661,534	+		GFF2641	0.64	+1.4
2,661,540	+		GFF2641	0.64	-0.2
2,661,542	-		GFF2641	0.65	-1.1
2,661,542	-		GFF2641	0.65	-0.1
2,661,542	-		GFF2641	0.65	-1.5
2,661,542	-		GFF2641	0.65	+0.4
2,661,545	+		GFF2641	0.65	-0.1
2,661,545	+		GFF2641	0.65	+0.3
2,661,545	+		GFF2641	0.65	-2.5
2,661,545	+		GFF2641	0.65	-1.3
2,661,564	+		GFF2641	0.66	-0.2
2,661,564	+		GFF2641	0.66	-0.7
2,661,564	+		GFF2641	0.66	-1.6
2,661,564	+		GFF2641	0.66	-0.5
2,661,564	+		GFF2641	0.66	-0.4
2,661,564	+		GFF2641	0.66	-0.3
2,661,564	+		GFF2641	0.66	-0.3
2,661,564	+		GFF2641	0.66	-0.5
2,661,564	+		GFF2641	0.66	+0.2
2,661,564	+		GFF2641	0.66	-1.2
2,661,564	+		GFF2641	0.66	+0.2
2,661,564	+		GFF2641	0.66	+0.8
2,661,564	+		GFF2641	0.66	-0.2
2,661,564	-		GFF2641	0.66	-0.6
2,661,566	+		GFF2641	0.66	-0.2
2,661,572	-		GFF2641	0.67	-2.5
2,661,572	-		GFF2641	0.67	-0.0
2,661,572	-		GFF2641	0.67	-1.6
2,661,574	+		GFF2641	0.67	-0.5
2,661,574	-		GFF2641	0.67	+0.3
2,661,584	+		GFF2641	0.68	+1.8
2,661,589	+		GFF2641	0.68	-0.4
2,661,592	-		GFF2641	0.68	-0.6
2,661,594	+		GFF2641	0.68	-2.1
2,661,609	+		GFF2641	0.69	+0.0
2,661,609	+		GFF2641	0.69	-0.8
2,661,617	-		GFF2641	0.70	+0.1
2,661,617	-		GFF2641	0.70	+0.4
2,661,617	-		GFF2641	0.70	-0.9
2,661,617	-		GFF2641	0.70	-2.5
2,661,695	-		GFF2641	0.76	-0.0
2,661,698	+		GFF2641	0.76	-3.2
2,661,698	+		GFF2641	0.76	-0.6
2,661,706	-		GFF2641	0.76	-1.3
2,661,706	-		GFF2641	0.76	-0.3
2,661,706	-		GFF2641	0.76	-0.9
2,661,706	-		GFF2641	0.76	+0.2
2,661,713	+		GFF2641	0.77	-0.5
2,661,713	+		GFF2641	0.77	-0.2
2,661,721	-		GFF2641	0.78	+1.1
2,661,721	-		GFF2641	0.78	+1.1
2,661,753	+		GFF2641	0.80	-0.1
2,661,761	-		GFF2641	0.80	-0.8
2,661,761	-		GFF2641	0.80	-2.4
2,661,761	-		GFF2641	0.80	-1.4
2,661,761	-		GFF2641	0.80	-0.5
2,661,761	-		GFF2641	0.80	-1.0
2,661,776	+		GFF2641	0.82	-1.2
2,661,783	+		GFF2641	0.82	+0.1
2,661,783	+		GFF2641	0.82	+0.5
2,661,783	+		GFF2641	0.82	+0.2
2,661,783	+		GFF2641	0.82	-0.8
2,661,783	+		GFF2641	0.82	+0.3
2,661,783	+		GFF2641	0.82	-1.8
2,661,783	+		GFF2641	0.82	-0.7
2,661,783	+		GFF2641	0.82	-0.2
2,661,784	+		GFF2641	0.82	-0.9
2,661,791	+		GFF2641	0.83	-0.7
2,661,791	-		GFF2641	0.83	+1.2
2,661,792	-		GFF2641	0.83	-1.4
2,661,792	-		GFF2641	0.83	-1.0
2,661,822	-		GFF2641	0.85	+0.2
2,661,822	-		GFF2641	0.85	+0.8
2,661,831	-		GFF2641	0.86	+0.6
2,661,833	-		GFF2641	0.86	-0.5
2,661,883	+		GFF2641	0.89	-1.2
2,661,890	+		GFF2641	0.90	-0.0
2,661,900	+				-1.7
2,661,908	-				-0.3
2,661,910	+				+0.3
2,661,910	+				-1.1
2,661,910	+				+0.4
2,661,913	-				-0.4
2,661,918	-				-1.0
2,661,918	-				-0.6
2,661,918	-				-1.5
2,661,919	+				-0.9
2,661,919	+				-2.0
2,661,919	+				-0.9
2,661,922	-				+0.8
2,661,927	-				+0.5
2,661,927	-				-1.9
2,661,927	-				-0.6
2,661,927	-				-1.4
2,661,927	-				-0.4
2,661,933	+				-1.5
2,661,936	-				+0.3
2,661,937	+				-0.2
2,661,941	-				-1.2
2,661,942	+				-1.2
2,661,969	-				-1.9
2,661,985	-				+0.5
2,661,995	-				-0.8
2,662,023	+				+0.3
2,662,024	+				-0.2
2,662,031	-				-1.3
2,662,031	-				-1.3
2,662,038	-				-1.4
2,662,038	-				+0.6
2,662,058	+				+1.1
2,662,061	-				+0.3
2,662,063	+				+0.2
2,662,063	+				+0.2
2,662,063	+				+0.0
2,662,063	+				-1.7
2,662,071	-				-1.5
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2,662,093	+				+0.8
2,662,096	-				-0.4
2,662,101	+				+0.2
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2,662,129	-				+0.6
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2,662,720	-		GFF2642	0.70	-1.0
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2,662,747	+		GFF2642	0.73	-0.6
2,662,772	+		GFF2642	0.75	+1.1
2,662,786	+		GFF2642	0.77	+0.3
2,662,791	+		GFF2642	0.77	-0.3
2,662,817	-		GFF2642	0.80	-0.6
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2,662,858	+		GFF2642	0.84	-1.8
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2,662,888	-		GFF2642	0.87	-0.8
2,662,983	-				+1.1
2,662,995	-				-0.5
2,663,003	-				-0.8