Strain Fitness in Sphingobium sp. HT1-2 around GFF2632

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,649,540	+		GFF2631	0.43	-2.0
2,649,542	-		GFF2631	0.43	-0.3
2,649,545	+		GFF2631	0.44	-0.9
2,649,545	+		GFF2631	0.44	+0.2
2,649,548	-		GFF2631	0.44	-1.4
2,649,548	-		GFF2631	0.44	+1.1
2,649,553	-		GFF2631	0.45	-1.5
2,649,563	-		GFF2631	0.46	+0.6
2,649,563	-		GFF2631	0.46	-2.4
2,649,565	+		GFF2631	0.47	+0.5
2,649,566	+		GFF2631	0.47	+1.2
2,649,574	-		GFF2631	0.48	-0.3
2,649,579	-		GFF2631	0.49	-0.4
2,649,583	-		GFF2631	0.49	+0.3
2,649,603	+		GFF2631	0.52	-0.4
2,649,642	+		GFF2631	0.58	-0.8
2,649,642	+		GFF2631	0.58	+0.8
2,649,642	+		GFF2631	0.58	-1.2
2,649,642	+		GFF2631	0.58	-0.0
2,649,642	+		GFF2631	0.58	+0.8
2,649,652	+		GFF2631	0.59	+0.5
2,649,652	+		GFF2631	0.59	+0.0
2,649,652	+		GFF2631	0.59	-2.3
2,649,652	+		GFF2631	0.59	+1.9
2,649,652	+		GFF2631	0.59	-1.1
2,649,652	+		GFF2631	0.59	+0.3
2,649,652	+		GFF2631	0.59	-0.5
2,649,652	+		GFF2631	0.59	-0.9
2,649,652	+		GFF2631	0.59	-0.7
2,649,652	+		GFF2631	0.59	+0.3
2,649,652	+		GFF2631	0.59	-0.1
2,649,652	+		GFF2631	0.59	+0.5
2,649,652	+		GFF2631	0.59	-1.2
2,649,652	+		GFF2631	0.59	+0.3
2,649,652	+		GFF2631	0.59	-0.5
2,649,652	+		GFF2631	0.59	+0.5
2,649,652	+		GFF2631	0.59	-0.4
2,649,652	+		GFF2631	0.59	-0.4
2,649,652	+		GFF2631	0.59	+0.2
2,649,652	+		GFF2631	0.59	-0.2
2,649,656	-		GFF2631	0.60	-0.5
2,649,660	-		GFF2631	0.60	-1.6
2,649,660	-		GFF2631	0.60	+0.5
2,649,660	-		GFF2631	0.60	-0.9
2,649,660	-		GFF2631	0.60	+0.4
2,649,660	-		GFF2631	0.60	+0.2
2,649,660	-		GFF2631	0.60	-2.2
2,649,660	-		GFF2631	0.60	-0.7
2,649,660	-		GFF2631	0.60	-1.5
2,649,660	-		GFF2631	0.60	-0.7
2,649,660	-		GFF2631	0.60	-1.9
2,649,660	-		GFF2631	0.60	-0.8
2,649,660	-		GFF2631	0.60	-1.3
2,649,660	-		GFF2631	0.60	+0.2
2,649,660	-		GFF2631	0.60	-0.5
2,649,681	+		GFF2631	0.63	-0.6
2,649,681	+		GFF2631	0.63	+0.7
2,649,684	-		GFF2631	0.64	-1.0
2,649,689	-		GFF2631	0.65	+0.2
2,649,689	-		GFF2631	0.65	+0.9
2,649,690	+		GFF2631	0.65	-0.2
2,649,690	+		GFF2631	0.65	-0.1
2,649,690	+		GFF2631	0.65	-1.2
2,649,690	+		GFF2631	0.65	-0.0
2,649,690	+		GFF2631	0.65	+0.4
2,649,690	+		GFF2631	0.65	-1.0
2,649,698	-		GFF2631	0.66	-1.3
2,649,698	-		GFF2631	0.66	-1.1
2,649,698	-		GFF2631	0.66	-1.4
2,649,698	-		GFF2631	0.66	-1.9
2,649,705	+		GFF2631	0.67	-1.2
2,649,705	+		GFF2631	0.67	-0.1
2,649,731	+		GFF2631	0.71	-0.3
2,649,739	-		GFF2631	0.72	-1.5
2,649,739	-		GFF2631	0.72	-1.1
2,649,739	-		GFF2631	0.72	-1.2
2,649,739	-		GFF2631	0.72	+0.1
2,649,739	-		GFF2631	0.72	-1.5
2,649,750	+		GFF2631	0.74	+0.1
2,649,750	+		GFF2631	0.74	-0.9
2,649,758	-		GFF2631	0.75	-0.9
2,649,767	+		GFF2631	0.76	-2.0
2,649,767	+		GFF2631	0.76	+0.6
2,649,775	-		GFF2631	0.77	+1.5
2,649,775	-		GFF2631	0.77	-1.5
2,649,775	-		GFF2631	0.77	-0.7
2,649,825	+		GFF2631	0.84	+0.5
2,649,833	-		GFF2631	0.86	+0.6
2,649,833	-		GFF2631	0.86	-1.7
2,649,833	-		GFF2631	0.86	-1.0
2,649,833	-		GFF2631	0.86	+0.9
2,649,847	-		GFF2631	0.88	+0.1
2,649,859	-		GFF2631	0.89	+0.0
2,649,859	-		GFF2631	0.89	-1.0
2,649,866	-				-0.7
2,649,879	-				+0.1
2,649,888	-				+0.2
2,649,919	+				-1.1
2,649,919	+				-0.8
2,649,926	+				+0.5
2,649,927	-				-0.5
2,649,927	-				-1.3
2,649,927	-				-0.5
2,649,928	-				-1.4
2,649,936	-				-2.3
2,649,942	+				+0.3
2,649,942	+				+1.1
2,649,942	+				-0.5
2,649,942	+				+1.0
2,649,944	+				+0.4
2,649,946	+				+0.1
2,649,950	-				+0.9
2,649,950	-				-0.1
2,649,969	+				-0.9
2,649,974	+				+1.6
2,649,974	+				-1.4
2,649,982	-				+0.3
2,649,990	-				-0.4
2,650,008	+				-0.6
2,650,008	+				-0.3
2,650,008	+				-2.8
2,650,008	+				-0.1
2,650,016	-				-1.1
2,650,016	-				-0.1
2,650,016	-				+0.3
2,650,016	-				-0.7
2,650,016	-				-2.1
2,650,035	+				-1.5
2,650,035	+				-1.1
2,650,035	+				+0.0
2,650,035	+				-1.5
2,650,035	+				-0.2
2,650,035	+				+0.2
2,650,035	+				-0.6
2,650,043	-				-1.5
2,650,043	-				-0.3
2,650,043	-				+0.6
2,650,043	-				+1.3
2,650,043	-				-0.2
2,650,043	-				+0.1
2,650,043	-				+0.9
2,650,043	-				-0.4
2,650,043	-				-0.4
2,650,043	-				+0.6
2,650,043	-				+0.4
2,650,043	-				-1.1
2,650,044	-				-1.6
2,650,052	+				-0.5
2,650,052	+				-2.5
2,650,052	+				-1.5
2,650,052	+				-0.9
2,650,052	+				+1.1
2,650,052	+				+0.2
2,650,052	+				-1.0
2,650,052	+				+0.4
2,650,052	+				-0.1
2,650,052	+				+0.1
2,650,052	+				-0.6
2,650,052	+				+0.6
2,650,054	+				+1.0
2,650,058	-				-1.4
2,650,060	-				-1.6
2,650,060	-				-0.6
2,650,060	-				-0.3
2,650,060	-				-0.9
2,650,060	-				-1.5
2,650,060	-				+1.6
2,650,060	-				-1.2
2,650,060	-				+0.1
2,650,060	-				-0.4
2,650,060	-				+0.7
2,650,060	-				+1.2
2,650,090	+				-0.2
2,650,092	-				-1.1
2,650,111	+				-0.4
2,650,130	-				-0.3
2,650,132	+				-1.8
2,650,132	-				-0.3
2,650,136	-				+0.8
2,650,139	+				-0.5
2,650,139	+				-0.6
2,650,139	+				-2.6
2,650,139	+				+0.3
2,650,183	+				-1.8
2,650,203	-				-0.5
2,650,222	-				+0.2
2,650,234	+				-1.0
2,650,241	-				-1.1
2,650,241	-				-1.8
2,650,243	+				+0.4
2,650,243	+				-0.9
2,650,251	-				-1.2
2,650,261	-				-0.6
2,650,267	+				+0.7
2,650,275	-				-0.8
2,650,277	+				-2.2
2,650,277	+				-0.5
2,650,290	+				+0.9
2,650,290	+				-0.1
2,650,290	+				-1.1
2,650,292	+				-1.3
2,650,313	+				-0.4
2,650,313	+				-0.5
2,650,321	-				-1.1
2,650,321	-				-1.4
2,650,321	-				-1.6
2,650,321	-				+1.4
2,650,329	+				+1.0
2,650,337	-				-1.8
2,650,337	-				+0.3
2,650,361	-				-0.4
2,650,363	+				-1.9
2,650,363	+				+0.6
2,650,363	+				+0.3
2,650,363	+				+1.0
2,650,363	+				-1.2
2,650,363	+				-0.2
2,650,363	+				-0.5
2,650,363	+				-0.0
2,650,371	-				-0.1
2,650,371	-				+0.2
2,650,371	-				-0.6
2,650,371	-				-0.1
2,650,373	+				-0.2
2,650,374	+				-0.1
2,650,374	+				+0.4
2,650,374	+				-0.6
2,650,391	+				+0.1
2,650,392	-				-2.0
2,650,396	+				-0.8
2,650,404	-				-1.1
2,650,412	-				+1.4
2,650,427	+				-1.0
2,650,470	-				-0.5
2,650,480	-				-0.7
2,650,508	+				+0.7
2,650,508	+				+1.6
2,650,526	+				+0.3
2,650,526	+				-0.2
2,650,526	+				+1.2
2,650,526	+				-0.7
2,650,526	+				-0.0
2,650,526	+				+1.0
2,650,526	+				+0.4
2,650,526	+				-1.1
2,650,526	+				-0.0
2,650,526	+				-0.8
2,650,526	+				-0.0
2,650,526	+				-0.1
2,650,526	+				-0.5
2,650,526	+				-0.0
2,650,526	+				+0.6
2,650,526	+				-0.2
2,650,526	+				-0.7
2,650,526	+				+0.4
2,650,532	-				+1.7
2,650,532	-				-0.9
2,650,534	-				+0.1
2,650,534	-				-0.9
2,650,534	-				+1.5
2,650,534	-				-0.9
2,650,534	-				-1.5
2,650,534	-				+1.0
2,650,534	-				-0.5
2,650,534	-				+0.3
2,650,534	-				+0.8
2,650,534	-				-2.5
2,650,534	-				+1.0
2,650,536	+				-0.6
2,650,537	+				+0.5
2,650,543	-		GFF2632	0.11	+0.8
2,650,544	-		GFF2632	0.11	-0.5
2,650,545	-		GFF2632	0.12	+0.9
2,650,545	-		GFF2632	0.12	-0.2
2,650,545	-		GFF2632	0.12	-0.9
2,650,545	-		GFF2632	0.12	+0.3
2,650,546	+		GFF2632	0.13	+0.2
2,650,560	-		GFF2632	0.21	-0.2
2,650,566	+		GFF2632	0.24	-1.7
2,650,574	-		GFF2632	0.29	+0.6
2,650,579	-		GFF2632	0.32	-0.4
2,650,579	-		GFF2632	0.32	-1.5
2,650,594	+		GFF2632	0.40	+0.1
2,650,600	-		GFF2632	0.44	+0.4
2,650,604	+		GFF2632	0.46	-0.7
2,650,612	-		GFF2632	0.51	+0.0
2,650,619	+		GFF2632	0.55	+1.0
2,650,627	-		GFF2632	0.59	-1.2
2,650,627	-		GFF2632	0.59	+1.3
2,650,627	-		GFF2632	0.59	-2.5
2,650,630	+		GFF2632	0.61	-0.8
2,650,632	-		GFF2632	0.62	-2.9
2,650,637	+		GFF2632	0.65	+0.3
2,650,637	-		GFF2632	0.65	+1.0
2,650,654	+		GFF2632	0.75	+0.2
2,650,659	+		GFF2632	0.78	+0.4
2,650,659	+		GFF2632	0.78	+0.6
2,650,659	+		GFF2632	0.78	-0.3
2,650,659	+		GFF2632	0.78	+1.2
2,650,664	+		GFF2632	0.80	-1.7
2,650,667	-		GFF2632	0.82	+1.0
2,650,667	-		GFF2632	0.82	-0.7
2,650,672	-		GFF2632	0.85	-1.6
2,650,684	+				-1.7
2,650,692	+				-0.7
2,650,692	+				-0.7
2,650,692	-				+0.2
2,650,700	-				-0.7
2,650,700	-				+0.3
2,650,700	-				-1.0
2,650,700	-				+0.2
2,650,767	+				-4.6
2,650,777	+				-0.2
2,650,777	+				-1.1
2,650,777	+				-0.4
2,650,778	-				+0.3
2,650,785	-				-0.6
2,650,785	-				+0.1
2,650,785	-				-0.5
2,650,785	-				+0.3
2,650,785	-				+1.1
2,650,785	-				-0.8
2,650,785	-				+0.9
2,650,785	-				-1.0
2,650,785	-				+1.7
2,650,793	+				-0.7
2,650,795	+				-1.7
2,650,795	+				-0.3
2,650,803	-				+1.5
2,650,803	-				-0.4
2,650,803	-				-0.1
2,650,813	-				+0.1
2,650,813	-				+0.1
2,650,839	-				-1.0
2,650,840	-				-0.3
2,650,847	+				+0.5
2,650,847	+				-2.3
2,650,847	+				-0.3
2,650,855	-				-0.3
2,650,855	-				-0.6
2,650,855	-				+1.5
2,650,858	+				+0.3
2,650,858	+				-1.6
2,650,866	-				-1.4
2,650,866	-				-2.1
2,650,881	+				-0.6
2,650,881	+				-1.9
2,650,881	+				-1.0
2,650,881	+				-1.9
2,650,881	+				+1.6
2,650,881	+				+0.3
2,650,881	+				-1.1
2,650,881	+				+0.8
2,650,881	+				-2.2
2,650,889	-				-0.9
2,650,889	-				-0.9
2,650,889	-				+0.3
2,650,889	-				-1.2
2,650,889	-				+0.2
2,650,899	-				-1.9
2,650,899	-				-0.0
2,650,899	-				+0.6
2,650,905	+				-0.1
2,650,964	+				-0.0
2,650,985	+				+0.5
2,650,985	+				-0.4
2,650,993	-				+0.1
2,650,997	+				-1.2
2,651,005	+				-0.4
2,651,005	-				-1.0
2,651,021	+				-0.1
2,651,021	+				+0.6
2,651,026	+				-2.0
2,651,026	+				-2.2
2,651,029	-				-0.2
2,651,032	-				-0.5
2,651,034	-				-1.7
2,651,034	-				-1.1
2,651,034	-				-0.7
2,651,034	-				-1.4
2,651,034	-				-1.4
2,651,039	-				+0.1
2,651,047	+				-1.7
2,651,047	+				-0.5
2,651,055	-				-0.4
2,651,055	-				+1.1
2,651,055	-				-0.4
2,651,055	-				-0.7
2,651,060	+				+0.4
2,651,064	+				-0.9
2,651,064	+				+0.6
2,651,068	-				-2.7
2,651,072	-				+0.7
2,651,072	-				-1.9
2,651,073	-				+0.4
2,651,078	-				+0.2
2,651,078	-				+0.1
2,651,098	+		GFF2633	0.12	-1.4
2,651,157	+		GFF2633	0.33	-0.4
2,651,157	+		GFF2633	0.33	+0.3
2,651,157	+		GFF2633	0.33	+1.2
2,651,157	+		GFF2633	0.33	+0.0
2,651,165	-		GFF2633	0.36	-0.4
2,651,165	-		GFF2633	0.36	-0.6
2,651,175	+		GFF2633	0.39	-1.7
2,651,190	+		GFF2633	0.44	-0.1
2,651,190	+		GFF2633	0.44	-0.1
2,651,198	-		GFF2633	0.47	+0.2
2,651,198	-		GFF2633	0.47	-2.0
2,651,198	-		GFF2633	0.47	+0.5
2,651,201	-		GFF2633	0.48	-1.4
2,651,210	-		GFF2633	0.51	-1.6
2,651,243	-		GFF2633	0.63	-1.8
2,651,256	-		GFF2633	0.67	+0.8
2,651,256	-		GFF2633	0.67	-0.5
2,651,257	-		GFF2633	0.68	+0.4
2,651,259	+		GFF2633	0.68	+0.2
2,651,272	-		GFF2633	0.73	+0.7
2,651,296	-		GFF2633	0.81	+1.6
2,651,340	-				+0.1
2,651,371	+				-0.4
2,651,371	+				+0.2
2,651,399	+				+0.1
2,651,404	+				-1.6
2,651,409	+				+0.3
2,651,412	-				+0.8
2,651,416	+				+0.2
2,651,417	-				-1.3
2,651,427	+				-1.5
2,651,435	-				+0.4
2,651,441	-				-0.9
2,651,451	+				-0.1
2,651,485	+				-1.4
2,651,501	+				+1.2
2,651,501	+				+0.2
2,651,502	-				+0.9
2,651,518	+				-1.9
2,651,527	+				+1.5
2,651,539	-				-1.9
2,651,577	-				-0.4
2,651,598	+				-1.5
2,651,607	-				+0.3
2,651,619	+				-3.2
2,651,619	+				-0.9
2,651,619	+				+0.3
2,651,619	+				-0.5
2,651,619	+				-2.0
2,651,627	-				-0.2
2,651,627	-				-0.2
2,651,627	-				-0.5
2,651,628	-				-0.4
2,651,628	-				-1.1
2,651,660	+				-1.1
2,651,661	+				-2.4
2,651,661	+				+0.8
2,651,661	+				+0.7
2,651,661	+				-0.2
2,651,661	+				-0.7
2,651,661	+				-1.5
2,651,661	+				+0.9
2,651,661	+				-0.4
2,651,661	+				+0.8
2,651,661	+				+0.3
2,651,661	+				-0.2
2,651,669	-				-0.7
2,651,669	-				-1.6
2,651,669	-				-0.8
2,651,669	-				-0.4