Strain Fitness in Sphingobium sp. HT1-2 around GFF2624

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,644,176	+		GFF2623	0.38	+0.8
2,644,184	-		GFF2623	0.39	+0.3
2,644,194	+		GFF2623	0.39	+0.2
2,644,194	+		GFF2623	0.39	+0.5
2,644,207	-		GFF2623	0.40	+0.4
2,644,221	+		GFF2623	0.41	-1.5
2,644,222	+		GFF2623	0.41	-1.2
2,644,230	-		GFF2623	0.42	+0.7
2,644,250	+		GFF2623	0.43	-0.7
2,644,250	+		GFF2623	0.43	-0.1
2,644,271	-		GFF2623	0.44	-2.3
2,644,283	+		GFF2623	0.45	+1.1
2,644,291	-		GFF2623	0.45	+1.0
2,644,317	+		GFF2623	0.47	+0.1
2,644,330	-		GFF2623	0.48	-1.1
2,644,330	-		GFF2623	0.48	+0.1
2,644,376	+		GFF2623	0.51	-0.9
2,644,376	+		GFF2623	0.51	-1.6
2,644,377	+		GFF2623	0.51	-0.6
2,644,384	-		GFF2623	0.51	+0.6
2,644,384	-		GFF2623	0.51	+0.3
2,644,385	-		GFF2623	0.51	+0.8
2,644,392	+		GFF2623	0.52	-0.9
2,644,437	+		GFF2623	0.54	+0.4
2,644,437	+		GFF2623	0.54	+0.3
2,644,454	+		GFF2623	0.56	+0.8
2,644,461	+		GFF2623	0.56	-1.6
2,644,462	-		GFF2623	0.56	-1.1
2,644,462	-		GFF2623	0.56	-3.1
2,644,466	+		GFF2623	0.56	+0.2
2,644,466	+		GFF2623	0.56	+0.8
2,644,466	+		GFF2623	0.56	+1.3
2,644,467	+		GFF2623	0.56	-0.5
2,644,467	+		GFF2623	0.56	+0.3
2,644,468	-		GFF2623	0.56	-0.4
2,644,469	-		GFF2623	0.56	-0.8
2,644,474	-		GFF2623	0.57	-1.9
2,644,474	-		GFF2623	0.57	-0.0
2,644,474	-		GFF2623	0.57	-1.9
2,644,474	-		GFF2623	0.57	-0.2
2,644,474	-		GFF2623	0.57	-0.0
2,644,496	-		GFF2623	0.58	+0.4
2,644,511	-		GFF2623	0.59	-0.4
2,644,540	+		GFF2623	0.61	-0.9
2,644,548	-		GFF2623	0.61	+0.4
2,644,553	-		GFF2623	0.62	+1.1
2,644,553	-		GFF2623	0.62	-1.4
2,644,558	+		GFF2623	0.62	+1.1
2,644,558	+		GFF2623	0.62	-0.4
2,644,565	-		GFF2623	0.62	-3.6
2,644,566	-		GFF2623	0.63	-2.0
2,644,566	-		GFF2623	0.63	-1.1
2,644,566	-		GFF2623	0.63	-1.4
2,644,568	+		GFF2623	0.63	+0.4
2,644,576	-		GFF2623	0.63	-1.6
2,644,576	-		GFF2623	0.63	-0.0
2,644,578	+		GFF2623	0.63	+1.1
2,644,604	+		GFF2623	0.65	-0.2
2,644,621	+		GFF2623	0.66	+0.2
2,644,621	+		GFF2623	0.66	+0.2
2,644,626	-		GFF2623	0.66	-0.8
2,644,629	-		GFF2623	0.66	+0.3
2,644,655	-		GFF2623	0.68	-0.3
2,644,655	-		GFF2623	0.68	+0.4
2,644,660	-		GFF2623	0.68	-0.8
2,644,660	-		GFF2623	0.68	-1.5
2,644,661	-		GFF2623	0.68	-0.0
2,644,663	+		GFF2623	0.69	-1.0
2,644,668	+		GFF2623	0.69	+0.0
2,644,668	+		GFF2623	0.69	-0.4
2,644,668	+		GFF2623	0.69	+1.2
2,644,668	+		GFF2623	0.69	-0.5
2,644,676	-		GFF2623	0.69	+0.1
2,644,676	-		GFF2623	0.69	-0.6
2,644,676	-		GFF2623	0.69	+0.3
2,644,676	-		GFF2623	0.69	-1.1
2,644,686	-		GFF2623	0.70	+0.2
2,644,686	-		GFF2623	0.70	-0.9
2,644,691	+		GFF2623	0.70	-0.8
2,644,696	+		GFF2623	0.71	+0.3
2,644,696	+		GFF2623	0.71	-1.5
2,644,704	-		GFF2623	0.71	-2.1
2,644,704	-		GFF2623	0.71	-1.4
2,644,732	+		GFF2623	0.73	-0.6
2,644,732	+		GFF2623	0.73	+0.8
2,644,740	-		GFF2623	0.73	-1.6
2,644,740	-		GFF2623	0.73	-0.9
2,644,740	-		GFF2623	0.73	-1.1
2,644,755	-		GFF2623	0.74	-0.3
2,644,771	+		GFF2623	0.75	-0.8
2,644,786	+		GFF2623	0.76	+0.6
2,644,786	+		GFF2623	0.76	-1.4
2,644,804	-		GFF2623	0.77	-0.9
2,644,819	+		GFF2623	0.78	-0.9
2,644,819	+		GFF2623	0.78	+0.7
2,644,827	-		GFF2623	0.79	+0.4
2,644,842	+		GFF2623	0.80	-1.8
2,644,842	+		GFF2623	0.80	-1.3
2,644,842	+		GFF2623	0.80	+0.2
2,644,842	+		GFF2623	0.80	+0.1
2,644,842	+		GFF2623	0.80	-0.5
2,644,842	+		GFF2623	0.80	+1.2
2,644,842	+		GFF2623	0.80	-1.2
2,644,850	-		GFF2623	0.80	+0.2
2,644,850	-		GFF2623	0.80	+0.1
2,644,850	-		GFF2623	0.80	+0.4
2,644,850	-		GFF2623	0.80	-0.1
2,644,850	-		GFF2623	0.80	+0.7
2,644,852	+		GFF2623	0.80	+1.2
2,644,860	-		GFF2623	0.81	-2.4
2,644,860	-		GFF2623	0.81	-0.7
2,644,895	+		GFF2623	0.83	+0.3
2,644,895	+		GFF2623	0.83	-2.6
2,644,895	+		GFF2623	0.83	-1.5
2,644,895	+		GFF2623	0.83	-0.6
2,644,895	+		GFF2623	0.83	-1.4
2,644,897	+		GFF2623	0.83	+0.7
2,644,913	+		GFF2623	0.84	-0.3
2,644,921	-		GFF2623	0.85	-0.7
2,644,938	+		GFF2623	0.86	+0.6
2,644,946	-		GFF2623	0.86	+0.7
2,644,946	-		GFF2623	0.86	-1.2
2,644,948	-		GFF2623	0.86	-1.1
2,644,948	-		GFF2623	0.86	-2.4
2,644,956	-		GFF2623	0.87	-0.4
2,644,957	+		GFF2623	0.87	-1.2
2,644,965	-		GFF2623	0.87	-0.7
2,644,974	+		GFF2623	0.88	-1.7
2,644,974	+		GFF2623	0.88	-1.2
2,644,974	+		GFF2623	0.88	+0.5
2,644,974	+		GFF2623	0.88	+0.8
2,644,975	-		GFF2623	0.88	-1.3
2,644,979	+		GFF2623	0.88	+0.0
2,644,982	-		GFF2623	0.89	-0.6
2,644,982	-		GFF2623	0.89	+0.1
2,644,982	-		GFF2623	0.89	-0.0
2,644,982	-		GFF2623	0.89	+0.5
2,644,982	-		GFF2623	0.89	+0.2
2,644,982	-		GFF2623	0.89	-0.5
2,644,994	-		GFF2623	0.89	-0.6
2,644,996	+		GFF2623	0.89	-1.3
2,645,036	-				-0.7
2,645,065	+				+0.1
2,645,071	+				-0.2
2,645,071	+				-1.9
2,645,073	-				-0.9
2,645,073	-				-0.7
2,645,073	-				-1.8
2,645,079	-				+0.6
2,645,079	-				+0.7
2,645,094	-				-0.1
2,645,104	-				+0.4
2,645,120	+				+0.0
2,645,120	+				-0.3
2,645,125	+				-1.6
2,645,138	-				-0.6
2,645,151	+				-1.2
2,645,165	+				+0.1
2,645,167	+				-0.8
2,645,176	+				-0.1
2,645,194	-				+0.1
2,645,211	-		GFF2624	0.14	-0.9
2,645,223	-		GFF2624	0.17	+0.6
2,645,223	-		GFF2624	0.17	+0.5
2,645,223	-		GFF2624	0.17	+0.9
2,645,252	-		GFF2624	0.25	-0.2
2,645,255	-		GFF2624	0.25	-1.9
2,645,293	-		GFF2624	0.36	-0.9
2,645,293	-		GFF2624	0.36	-0.8
2,645,294	-		GFF2624	0.36	-0.0
2,645,371	-		GFF2624	0.57	-0.6
2,645,406	-		GFF2624	0.66	-2.8
2,645,406	-		GFF2624	0.66	-0.2
2,645,406	-		GFF2624	0.66	-1.7
2,645,406	-		GFF2624	0.66	+0.3
2,645,407	-		GFF2624	0.67	-1.5
2,645,409	+		GFF2624	0.67	+0.5
2,645,418	-		GFF2624	0.70	-0.2
2,645,418	-		GFF2624	0.70	-0.4
2,645,424	-		GFF2624	0.71	+0.3
2,645,435	-		GFF2624	0.74	+0.2
2,645,491	+		GFF2624	0.89	-0.2
2,645,505	-				-0.2
2,645,510	+				+0.3
2,645,518	-				-0.1
2,645,518	-				-0.6
2,645,531	+				+0.6
2,645,537	+				-0.1
2,645,537	+				-0.4
2,645,543	-				+0.1
2,645,546	+				-0.4
2,645,615	+				-0.8
2,645,623	-				+0.3
2,645,649	+				-1.4
2,645,663	+				-0.2
2,645,677	+				+1.0
2,645,684	+				-1.1
2,645,684	+				-0.1
2,645,684	+				+0.6
2,645,684	+				-0.2
2,645,684	+				-0.1
2,645,684	+				-0.4
2,645,684	+				+0.8
2,645,684	+				-0.1
2,645,684	+				+0.4
2,645,684	+				-0.6
2,645,684	+				-1.1
2,645,684	+				-0.4
2,645,684	+				-0.0
2,645,684	+				-0.5
2,645,684	+				-0.6
2,645,684	+				+1.0
2,645,684	+				+0.2
2,645,684	+				-1.5
2,645,684	+				-1.1
2,645,684	+				-1.3
2,645,684	+				-1.0
2,645,685	-				-1.7
2,645,685	-				-0.4
2,645,685	-				-0.8
2,645,692	-				+0.6
2,645,692	-				+0.2
2,645,692	-				+0.4
2,645,692	-				-0.5
2,645,692	-				-0.1
2,645,692	-				-1.4
2,645,692	-				-1.2
2,645,692	-				-0.7
2,645,692	-				-2.1
2,645,692	-				-1.5
2,645,692	-				-0.2
2,645,692	-				+0.1
2,645,692	-				-0.7
2,645,692	-				-0.2
2,645,692	-				+0.5
2,645,692	-				+0.3
2,645,692	-				-0.2
2,645,692	-				+0.8
2,645,692	-				+0.3
2,645,692	-				-1.0
2,645,692	-				-0.2
2,645,692	-				-0.0
2,645,692	-				-0.1
2,645,692	-				-0.2
2,645,692	-				+0.0
2,645,692	-				-1.1
2,645,692	-				+0.8
2,645,692	-				+0.2
2,645,692	-				-1.3
2,645,692	-				+0.1
2,645,692	-				-0.9
2,645,692	-				+0.9
2,645,692	-				-1.8
2,645,702	+				-0.4
2,645,709	+				+0.8
2,645,717	+				-1.3
2,645,717	-				-0.5
2,645,735	+				-0.7
2,645,747	+				-0.7
2,645,755	+				+0.4
2,645,763	-				-0.9
2,645,763	-				-0.8
2,645,773	-				-0.4
2,645,779	+				-0.4
2,645,779	+				-1.4
2,645,794	+				+0.6
2,645,797	-				+0.8
2,645,799	+				-0.3
2,645,819	-				+0.8
2,645,824	-				-1.3
2,645,825	-				-0.2
2,645,844	-				-1.0
2,645,850	+				-0.7
2,645,850	+				-0.6
2,645,850	+				-0.3
2,645,850	+				-1.9
2,645,850	+				+0.1
2,645,850	+				-0.2
2,645,850	+				-0.8
2,645,850	+				+1.0
2,645,850	+				-1.5
2,645,850	+				+0.1
2,645,858	-				+0.3
2,645,858	-				+0.2
2,645,858	-				+0.1
2,645,858	-				-0.3
2,645,860	+				+1.0
2,645,860	+				-0.0
2,645,862	+				-1.9
2,645,862	+				+0.6
2,645,862	+				-0.4
2,645,863	+				-1.4
2,645,868	-				+0.0
2,645,868	-				-1.1
2,645,870	-				+0.3
2,645,873	+				+0.5
2,645,880	-				+0.4
2,645,881	-				-2.3
2,645,892	-				-0.2
2,645,895	-				-0.2
2,645,901	-				+1.5
2,645,919	+				+0.3
2,645,946	+				+0.6
2,645,954	-				-0.0
2,646,026	-		GFF2625	0.18	+0.7
2,646,069	+		GFF2625	0.31	-0.7
2,646,074	+		GFF2625	0.32	-0.9
2,646,181	-		GFF2625	0.65	+1.0
2,646,247	-		GFF2625	0.84	-0.2
2,646,288	+				-1.5
2,646,315	-				-0.9
2,646,315	-				-0.7
2,646,315	-				+1.0
2,646,315	-				-0.9
2,646,342	+				+0.1
2,646,366	+				+1.5
2,646,376	+				+1.6
2,646,386	+				-0.7
2,646,386	+				-0.6
2,646,386	+				-0.4
2,646,394	+		GFF2626	0.13	-0.7
2,646,394	-		GFF2626	0.13	+0.3
2,646,402	-		GFF2626	0.17	+0.2
2,646,402	-		GFF2626	0.17	+0.1
2,646,408	+		GFF2626	0.19	-0.8
2,646,414	-		GFF2626	0.22	-1.5
2,646,420	+		GFF2626	0.24	-1.0
2,646,420	+		GFF2626	0.24	-1.1
2,646,423	-		GFF2626	0.26	-0.0
2,646,428	-		GFF2626	0.28	-2.4
2,646,444	+		GFF2626	0.35	+0.8
2,646,444	+		GFF2626	0.35	-0.0
2,646,444	+		GFF2626	0.35	-1.1
2,646,452	-		GFF2626	0.38	-0.2
2,646,454	+		GFF2626	0.39	-1.1
2,646,454	+		GFF2626	0.39	+0.3
2,646,458	+		GFF2626	0.41	+0.2
2,646,459	+		GFF2626	0.41	-0.0
2,646,462	-		GFF2626	0.42	-1.2
2,646,481	+		GFF2626	0.50	-0.5
2,646,529	+		GFF2626	0.71	+0.1