Strain Fitness in Sphingobium sp. HT1-2 around GFF2604

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,623,619	-		GFF2603	0.69	-0.4
2,623,645	+		GFF2603	0.70	+0.0
2,623,674	-		GFF2603	0.72	-0.7
2,623,718	-		GFF2603	0.74	+0.2
2,623,729	+		GFF2603	0.74	+0.0
2,623,751	+		GFF2603	0.75	-0.1
2,623,753	+		GFF2603	0.75	-0.4
2,623,753	+		GFF2603	0.75	-0.1
2,623,753	+		GFF2603	0.75	-0.3
2,623,758	+		GFF2603	0.76	-1.0
2,623,758	+		GFF2603	0.76	+0.2
2,623,759	-		GFF2603	0.76	-0.2
2,623,759	-		GFF2603	0.76	-0.9
2,623,761	-		GFF2603	0.76	-0.5
2,623,761	-		GFF2603	0.76	+1.9
2,623,761	-		GFF2603	0.76	-0.7
2,623,761	-		GFF2603	0.76	-0.2
2,623,766	-		GFF2603	0.76	-1.4
2,623,766	-		GFF2603	0.76	-1.7
2,623,771	-		GFF2603	0.76	-0.4
2,623,793	+		GFF2603	0.77	-1.2
2,623,840	+		GFF2603	0.79	+0.1
2,623,840	+		GFF2603	0.79	-0.2
2,623,845	+		GFF2603	0.80	-0.5
2,623,845	+		GFF2603	0.80	-2.3
2,623,845	+		GFF2603	0.80	-0.4
2,623,845	+		GFF2603	0.80	-0.9
2,623,853	-		GFF2603	0.80	+0.5
2,623,856	-		GFF2603	0.80	-0.7
2,623,856	-		GFF2603	0.80	+1.4
2,623,862	-		GFF2603	0.80	+0.3
2,623,879	+		GFF2603	0.81	-0.2
2,623,884	+		GFF2603	0.81	-0.4
2,623,897	+		GFF2603	0.82	-1.0
2,623,899	-		GFF2603	0.82	-0.0
2,623,916	-		GFF2603	0.83	+0.5
2,623,919	+		GFF2603	0.83	-2.4
2,623,936	-		GFF2603	0.84	-1.5
2,623,941	+		GFF2603	0.84	-2.6
2,623,941	+		GFF2603	0.84	-2.2
2,623,941	-		GFF2603	0.84	-0.4
2,623,949	-		GFF2603	0.84	-2.3
2,623,949	-		GFF2603	0.84	-1.0
2,623,956	+		GFF2603	0.85	+0.5
2,623,958	+		GFF2603	0.85	-0.2
2,623,958	+		GFF2603	0.85	-0.6
2,623,964	-		GFF2603	0.85	+0.8
2,623,966	-		GFF2603	0.85	-0.4
2,623,966	-		GFF2603	0.85	+1.2
2,624,002	-		GFF2603	0.87	+1.0
2,624,017	-		GFF2603	0.87	-2.0
2,624,036	-		GFF2603	0.88	-0.2
2,624,048	+		GFF2603	0.89	-1.2
2,624,060	-		GFF2603	0.89	-0.1
2,624,083	-				-0.5
2,624,112	+				-0.6
2,624,112	+				+0.8
2,624,112	+				-0.5
2,624,112	+				+0.6
2,624,116	-				+0.5
2,624,120	-				+0.7
2,624,120	-				-0.5
2,624,120	-				-1.2
2,624,120	-				-0.4
2,624,120	-				-0.4
2,624,125	+				+0.2
2,624,145	+				+1.1
2,624,153	-				-2.2
2,624,153	-				-1.2
2,624,162	-				+0.2
2,624,195	+				-1.7
2,624,203	-				-0.1
2,624,213	+				+0.0
2,624,213	+				+0.7
2,624,221	-				+0.1
2,624,247	-				+0.1
2,624,252	-				-0.5
2,624,284	+				-2.0
2,624,286	+				+0.1
2,624,316	+				+1.9
2,624,316	+				+0.8
2,624,316	+				+0.4
2,624,316	+				-1.5
2,624,316	+				-0.2
2,624,316	+				+0.2
2,624,316	+				+1.4
2,624,316	+				-0.7
2,624,316	+				-2.6
2,624,316	+				+1.1
2,624,316	+				-0.7
2,624,324	-				-1.2
2,624,324	-				-0.5
2,624,324	-				+0.6
2,624,324	-				-0.2
2,624,324	-				+0.5
2,624,324	-				+1.0
2,624,324	-				-0.6
2,624,324	-				+2.0
2,624,324	-				+0.6
2,624,324	-				-0.2
2,624,324	-				-0.0
2,624,331	+				-1.2
2,624,337	+				-0.3
2,624,339	-				-0.4
2,624,416	+				-0.1
2,624,416	+				-2.3
2,624,434	-				-0.3
2,624,439	+				-2.1
2,624,447	+				-0.4
2,624,459	+				-0.1
2,624,459	+				-0.2
2,624,467	-				+1.4
2,624,467	-				-0.5
2,624,467	-				+1.0
2,624,482	+				+0.4
2,624,485	+				-0.3
2,624,487	+				-0.9
2,624,490	-				-0.3
2,624,502	+				+0.4
2,624,502	+				-0.6
2,624,525	+				-1.5
2,624,527	+				-0.9
2,624,533	-				+0.1
2,624,533	-				-1.0
2,624,533	-				-1.2
2,624,547	-				-1.4
2,624,558	-				-0.7
2,624,561	+				+0.1
2,624,561	+				-0.1
2,624,569	-				-1.4
2,624,571	+				-0.6
2,624,572	+				-0.6
2,624,572	+				-0.2
2,624,572	+				-1.9
2,624,572	+				-0.2
2,624,572	+				-0.5
2,624,572	+				+0.6
2,624,572	+				-1.2
2,624,579	-				-2.4
2,624,579	-				+0.7
2,624,580	-				-0.5
2,624,580	-				+0.2
2,624,580	-				-0.8
2,624,580	-				+0.3
2,624,586	+				+0.0
2,624,594	-				-0.4
2,624,607	+				-1.9
2,624,608	-				+0.6
2,624,636	+				+0.1
2,624,652	-				+0.3
2,624,654	-				-2.0
2,624,656	+				-1.1
2,624,657	+				-3.1
2,624,657	+				+0.2
2,624,667	+		GFF2604	0.10	+0.2
2,624,670	-		GFF2604	0.11	-1.5
2,624,675	-		GFF2604	0.11	-1.0
2,624,676	-		GFF2604	0.11	-0.3
2,624,679	+		GFF2604	0.12	+0.1
2,624,679	+		GFF2604	0.12	-1.8
2,624,687	-		GFF2604	0.13	-1.4
2,624,687	-		GFF2604	0.13	+0.3
2,624,687	-		GFF2604	0.13	-0.2
2,624,722	+		GFF2604	0.17	-0.2
2,624,725	+		GFF2604	0.18	-1.6
2,624,732	+		GFF2604	0.19	-0.5
2,624,771	-		GFF2604	0.24	+0.1
2,624,778	+		GFF2604	0.25	+1.4
2,624,783	+		GFF2604	0.25	+0.0
2,624,848	+		GFF2604	0.34	-1.5
2,624,867	+		GFF2604	0.36	+0.4
2,624,871	-		GFF2604	0.37	+0.2
2,624,875	-		GFF2604	0.37	-0.3
2,624,875	-		GFF2604	0.37	-0.8
2,624,933	-		GFF2604	0.45	-0.5
2,624,958	-		GFF2604	0.48	-2.1
2,624,958	-		GFF2604	0.48	+0.2
2,624,960	+		GFF2604	0.48	-0.7
2,624,968	-		GFF2604	0.49	+0.8
2,624,968	-		GFF2604	0.49	-0.7
2,624,973	-		GFF2604	0.50	+0.6
2,624,979	-		GFF2604	0.51	+0.2
2,624,985	-		GFF2604	0.52	-0.1
2,624,985	-		GFF2604	0.52	+1.2
2,625,007	+		GFF2604	0.54	-0.0
2,625,017	+		GFF2604	0.56	+1.4
2,625,022	+		GFF2604	0.56	-0.9
2,625,048	-		GFF2604	0.60	+1.2
2,625,089	+		GFF2604	0.65	-1.0
2,625,094	+		GFF2604	0.66	+0.6
2,625,144	-		GFF2604	0.72	-0.5
2,625,154	-		GFF2604	0.74	+0.3
2,625,163	+		GFF2604	0.75	-0.1
2,625,168	+		GFF2604	0.75	-1.2
2,625,171	-		GFF2604	0.76	+0.9
2,625,173	+		GFF2604	0.76	+0.7
2,625,173	+		GFF2604	0.76	-1.9
2,625,173	+		GFF2604	0.76	-1.9
2,625,173	+		GFF2604	0.76	+0.3
2,625,181	-		GFF2604	0.77	+0.3
2,625,181	-		GFF2604	0.77	+0.6
2,625,181	-		GFF2604	0.77	+0.1
2,625,189	-		GFF2604	0.78	+0.5
2,625,193	+		GFF2604	0.79	-0.0
2,625,193	-		GFF2604	0.79	+0.2
2,625,193	-		GFF2604	0.79	-0.4
2,625,195	+		GFF2604	0.79	+0.5
2,625,195	+		GFF2604	0.79	+0.6
2,625,201	-		GFF2604	0.80	+0.3
2,625,203	-		GFF2604	0.80	-0.2
2,625,203	-		GFF2604	0.80	-0.9
2,625,203	-		GFF2604	0.80	+1.0
2,625,212	+		GFF2604	0.81	+0.9
2,625,213	+		GFF2604	0.81	-0.9
2,625,219	+		GFF2604	0.82	-1.8
2,625,224	+		GFF2604	0.83	-0.1
2,625,224	+		GFF2604	0.83	+0.5
2,625,224	+		GFF2604	0.83	+0.5
2,625,224	+		GFF2604	0.83	-1.4
2,625,224	+		GFF2604	0.83	+0.3
2,625,224	+		GFF2604	0.83	+0.2
2,625,224	+		GFF2604	0.83	-0.9
2,625,224	+		GFF2604	0.83	+0.6
2,625,229	+		GFF2604	0.83	-1.4
2,625,232	-		GFF2604	0.84	-0.4
2,625,232	-		GFF2604	0.84	-0.7
2,625,232	-		GFF2604	0.84	-0.1
2,625,232	-		GFF2604	0.84	-2.4
2,625,232	-		GFF2604	0.84	-1.5
2,625,232	-		GFF2604	0.84	-0.7
2,625,232	-		GFF2604	0.84	-0.7
2,625,232	-		GFF2604	0.84	+0.0
2,625,232	-		GFF2604	0.84	-1.3
2,625,232	-		GFF2604	0.84	+0.7
2,625,236	-		GFF2604	0.84	-1.3
2,625,237	-		GFF2604	0.84	-0.3
2,625,259	+		GFF2604	0.87	-0.2
2,625,267	+		GFF2604	0.88	+0.5
2,625,267	+		GFF2604	0.88	-2.3
2,625,297	+				+1.0
2,625,305	-				+0.7
2,625,350	-				+0.3
2,625,350	-				+1.2
2,625,350	-				+0.8
2,625,368	+				-0.2
2,625,368	-				+0.5
2,625,376	-				-2.2
2,625,386	-				+0.3
2,625,391	+				-1.4
2,625,392	-				-1.1
2,625,396	+				-0.6
2,625,399	-				-0.1
2,625,399	-				-2.0
2,625,399	-				-0.5
2,625,400	-				+0.1
2,625,410	+				-0.2
2,625,446	+				+0.6
2,625,446	+				-0.3
2,625,446	+				-0.7
2,625,451	+				+1.0
2,625,453	-				-0.1
2,625,476	+				-0.4
2,625,484	-				+1.7
2,625,485	+				-2.1
2,625,488	+				-0.1
2,625,490	+				-0.4
2,625,493	-				-2.5
2,625,524	-				+0.3
2,625,527	+				-0.5
2,625,527	+				+0.3
2,625,527	+				-0.5
2,625,527	+				+1.0
2,625,535	-				-0.0
2,625,535	-				-1.1
2,625,535	-				-2.2
2,625,535	-				-1.2
2,625,546	+				-0.4
2,625,546	+				+0.8
2,625,549	-				+0.3
2,625,552	+				+0.2
2,625,561	+				-0.8
2,625,561	+				+0.7
2,625,569	-				-0.6
2,625,576	+		GFF2605	0.10	-0.7
2,625,576	+		GFF2605	0.10	-1.1
2,625,579	-		GFF2605	0.10	-1.2
2,625,579	-		GFF2605	0.10	-0.1
2,625,581	+		GFF2605	0.11	-1.2
2,625,581	+		GFF2605	0.11	-1.7
2,625,581	+		GFF2605	0.11	+1.9
2,625,581	+		GFF2605	0.11	+0.6
2,625,589	-		GFF2605	0.11	-0.5
2,625,589	-		GFF2605	0.11	-0.1
2,625,589	-		GFF2605	0.11	-0.7
2,625,594	-		GFF2605	0.11	+0.2
2,625,642	+		GFF2605	0.13	+0.6
2,625,644	+		GFF2605	0.14	-0.6
2,625,644	+		GFF2605	0.14	-0.7
2,625,647	-		GFF2605	0.14	-0.8
2,625,649	+		GFF2605	0.14	+0.5
2,625,652	-		GFF2605	0.14	-1.1
2,625,652	-		GFF2605	0.14	-0.5
2,625,654	+		GFF2605	0.14	+0.3
2,625,668	-		GFF2605	0.15	-0.0
2,625,695	+		GFF2605	0.16	-0.6
2,625,700	+		GFF2605	0.16	-1.2
2,625,705	+		GFF2605	0.16	+1.4
2,625,717	-		GFF2605	0.17	-0.8
2,625,744	+		GFF2605	0.18	-0.2
2,625,752	-		GFF2605	0.19	-0.6
2,625,752	-		GFF2605	0.19	-0.4
2,625,752	-		GFF2605	0.19	+1.5
2,625,777	+		GFF2605	0.20	-0.1
2,625,784	-		GFF2605	0.20	-0.4
2,625,822	-		GFF2605	0.22	+0.2
2,625,828	-		GFF2605	0.22	-0.1
2,625,836	+		GFF2605	0.23	+0.8
2,625,869	+		GFF2605	0.24	-0.6
2,625,869	+		GFF2605	0.24	+0.0
2,625,869	+		GFF2605	0.24	+1.6
2,625,877	-		GFF2605	0.25	-0.4
2,625,879	+		GFF2605	0.25	-0.8
2,625,879	+		GFF2605	0.25	-2.2
2,625,887	-		GFF2605	0.25	+0.3
2,625,887	-		GFF2605	0.25	-2.2
2,625,887	-		GFF2605	0.25	+0.9
2,625,887	-		GFF2605	0.25	-0.3
2,625,905	+		GFF2605	0.26	+0.5
2,625,915	+		GFF2605	0.26	+1.1
2,625,915	+		GFF2605	0.26	-1.2
2,625,923	-		GFF2605	0.27	+0.5
2,625,928	+		GFF2605	0.27	+0.5
2,625,928	+		GFF2605	0.27	-1.2
2,625,928	+		GFF2605	0.27	-0.7
2,625,936	-		GFF2605	0.27	-2.3
2,625,936	-		GFF2605	0.27	-2.1
2,625,936	-		GFF2605	0.27	-0.4
2,625,942	-		GFF2605	0.28	-0.5
2,625,975	+		GFF2605	0.29	-0.2
2,625,975	+		GFF2605	0.29	+0.5
2,625,976	-		GFF2605	0.29	-1.2
2,625,983	-		GFF2605	0.30	+0.6
2,626,001	-		GFF2605	0.31	+0.7
2,626,001	-		GFF2605	0.31	+0.9
2,626,001	-		GFF2605	0.31	+1.1
2,626,007	-		GFF2605	0.31	-0.8
2,626,030	-		GFF2605	0.32	-0.7
2,626,030	-		GFF2605	0.32	-0.2
2,626,032	+		GFF2605	0.32	-2.1
2,626,042	+		GFF2605	0.33	+0.3
2,626,042	+		GFF2605	0.33	+0.0
2,626,046	-		GFF2605	0.33	-0.8
2,626,046	-		GFF2605	0.33	-0.2
2,626,052	+		GFF2605	0.33	-1.4
2,626,052	+		GFF2605	0.33	-0.4
2,626,052	+		GFF2605	0.33	+0.7
2,626,052	+		GFF2605	0.33	+0.5
2,626,052	+		GFF2605	0.33	+0.5
2,626,052	+		GFF2605	0.33	-1.8
2,626,054	+		GFF2605	0.33	-1.2
2,626,060	-		GFF2605	0.33	-1.9
2,626,060	-		GFF2605	0.33	-0.4
2,626,060	-		GFF2605	0.33	-1.8
2,626,062	+		GFF2605	0.33	+1.4
2,626,062	+		GFF2605	0.33	-0.5
2,626,070	-		GFF2605	0.34	-1.7
2,626,070	-		GFF2605	0.34	-2.0
2,626,070	-		GFF2605	0.34	+1.1
2,626,070	-		GFF2605	0.34	-0.7
2,626,079	+		GFF2605	0.34	-0.7
2,626,079	+		GFF2605	0.34	-2.4
2,626,080	-		GFF2605	0.34	+0.2
2,626,081	+		GFF2605	0.34	-1.7
2,626,087	-		GFF2605	0.35	-0.8
2,626,087	-		GFF2605	0.35	-0.5
2,626,087	-		GFF2605	0.35	-0.2
2,626,087	-		GFF2605	0.35	-0.2
2,626,089	-		GFF2605	0.35	-0.8
2,626,105	-		GFF2605	0.36	-1.9
2,626,112	+		GFF2605	0.36	+0.5
2,626,117	+		GFF2605	0.36	-1.2
2,626,117	+		GFF2605	0.36	-0.6
2,626,117	+		GFF2605	0.36	-0.7
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