Strain Fitness in Sphingobium sp. HT1-2 around GFF2591

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,606,474	+				-0.4
2,606,482	-				-2.0
2,606,512	+				-0.3
2,606,513	+				-0.5
2,606,515	-				+0.0
2,606,521	-				-0.4
2,606,521	-				-0.9
2,606,550	+				-2.1
2,606,594	-		GFF2590	0.11	-1.1
2,606,609	+		GFF2590	0.12	-0.7
2,606,625	+		GFF2590	0.14	-0.8
2,606,625	+		GFF2590	0.14	-0.5
2,606,625	+		GFF2590	0.14	+0.1
2,606,628	-		GFF2590	0.14	-1.8
2,606,631	+		GFF2590	0.14	+0.4
2,606,633	-		GFF2590	0.15	+0.9
2,606,634	-		GFF2590	0.15	-0.1
2,606,641	+		GFF2590	0.15	-0.4
2,606,641	+		GFF2590	0.15	-0.5
2,606,649	-		GFF2590	0.16	+0.3
2,606,670	+		GFF2590	0.18	+0.8
2,606,670	+		GFF2590	0.18	-0.7
2,606,673	+		GFF2590	0.19	-0.4
2,606,675	+		GFF2590	0.19	-0.7
2,606,675	+		GFF2590	0.19	-1.1
2,606,683	-		GFF2590	0.20	+0.2
2,606,683	-		GFF2590	0.20	-3.2
2,606,693	+		GFF2590	0.21	+0.5
2,606,704	-		GFF2590	0.22	-1.6
2,606,704	-		GFF2590	0.22	-0.7
2,606,707	+		GFF2590	0.22	-1.1
2,606,722	-		GFF2590	0.24	-0.2
2,606,745	+		GFF2590	0.26	-1.2
2,606,748	-		GFF2590	0.26	-1.1
2,606,753	-		GFF2590	0.27	+0.6
2,606,754	-		GFF2590	0.27	-0.5
2,606,754	-		GFF2590	0.27	-0.2
2,606,762	-		GFF2590	0.28	-0.4
2,606,763	-		GFF2590	0.28	+0.8
2,606,766	+		GFF2590	0.28	-0.1
2,606,766	+		GFF2590	0.28	-0.3
2,606,766	+		GFF2590	0.28	+0.0
2,606,766	+		GFF2590	0.28	+0.5
2,606,772	-		GFF2590	0.29	-0.9
2,606,774	-		GFF2590	0.29	-0.2
2,606,774	-		GFF2590	0.29	-1.9
2,606,774	-		GFF2590	0.29	-0.3
2,606,794	-		GFF2590	0.31	+0.1
2,606,832	+		GFF2590	0.35	-0.3
2,606,842	-		GFF2590	0.36	-0.1
2,606,852	+		GFF2590	0.37	+0.9
2,606,852	+		GFF2590	0.37	-1.8
2,606,885	+		GFF2590	0.40	-0.6
2,606,885	+		GFF2590	0.40	+1.6
2,606,885	+		GFF2590	0.40	+0.6
2,606,886	+		GFF2590	0.40	-0.4
2,606,893	-		GFF2590	0.41	+0.0
2,606,893	-		GFF2590	0.41	-0.3
2,606,894	+		GFF2590	0.41	-0.3
2,606,902	-		GFF2590	0.42	+0.7
2,606,911	+		GFF2590	0.43	+0.4
2,606,911	+		GFF2590	0.43	+0.4
2,606,911	+		GFF2590	0.43	-0.8
2,606,911	+		GFF2590	0.43	+0.1
2,606,921	+		GFF2590	0.44	+0.9
2,606,923	-		GFF2590	0.44	+0.5
2,606,931	+		GFF2590	0.45	+0.2
2,606,931	+		GFF2590	0.45	-0.9
2,606,931	+		GFF2590	0.45	-0.2
2,606,931	+		GFF2590	0.45	+0.1
2,606,936	+		GFF2590	0.45	-1.7
2,606,936	+		GFF2590	0.45	+0.9
2,606,936	+		GFF2590	0.45	-0.8
2,606,936	+		GFF2590	0.45	+0.6
2,606,936	+		GFF2590	0.45	+0.3
2,606,939	-		GFF2590	0.46	+0.0
2,606,944	-		GFF2590	0.46	+0.7
2,606,944	-		GFF2590	0.46	-1.2
2,606,944	-		GFF2590	0.46	+0.4
2,606,954	-		GFF2590	0.47	-1.2
2,606,968	+		GFF2590	0.49	+0.4
2,606,976	-		GFF2590	0.50	+1.5
2,606,992	+		GFF2590	0.51	+0.8
2,607,027	+		GFF2590	0.55	-2.2
2,607,035	-		GFF2590	0.56	-0.9
2,607,068	-		GFF2590	0.59	+0.1
2,607,100	+		GFF2590	0.62	-0.9
2,607,100	+		GFF2590	0.62	-0.2
2,607,101	+		GFF2590	0.62	+0.1
2,607,108	-		GFF2590	0.63	-1.8
2,607,108	-		GFF2590	0.63	-1.0
2,607,118	-		GFF2590	0.64	-0.1
2,607,127	+		GFF2590	0.65	-0.8
2,607,127	+		GFF2590	0.65	+1.0
2,607,127	+		GFF2590	0.65	-1.2
2,607,127	+		GFF2590	0.65	+0.6
2,607,127	+		GFF2590	0.65	-0.6
2,607,127	+		GFF2590	0.65	-0.8
2,607,127	+		GFF2590	0.65	-0.4
2,607,135	-		GFF2590	0.66	-0.2
2,607,135	-		GFF2590	0.66	+0.6
2,607,135	-		GFF2590	0.66	+0.0
2,607,169	+		GFF2590	0.69	-1.0
2,607,177	-		GFF2590	0.70	-1.4
2,607,185	+		GFF2590	0.71	-1.8
2,607,192	+		GFF2590	0.72	-0.8
2,607,225	+		GFF2590	0.75	-2.0
2,607,230	+		GFF2590	0.75	-0.3
2,607,230	+		GFF2590	0.75	-1.2
2,607,238	-		GFF2590	0.76	-1.9
2,607,285	+		GFF2590	0.81	-1.4
2,607,328	+		GFF2590	0.85	-1.5
2,607,328	+		GFF2590	0.85	-1.1
2,607,328	+		GFF2590	0.85	-0.1
2,607,328	+		GFF2590	0.85	-1.9
2,607,328	+		GFF2590	0.85	+0.8
2,607,338	+		GFF2590	0.86	-0.8
2,607,346	-		GFF2590	0.87	+0.3
2,607,351	+		GFF2590	0.88	-0.7
2,607,367	+		GFF2590	0.89	-1.2
2,607,377	+				+0.3
2,607,377	+				+0.1
2,607,389	+				-0.3
2,607,390	+				-1.0
2,607,396	+				-2.4
2,607,396	-				-1.2
2,607,397	+				-1.4
2,607,397	+				+0.9
2,607,403	-				-0.5
2,607,403	-				+1.5
2,607,403	-				-0.4
2,607,404	-				-1.9
2,607,415	+				-0.9
2,607,419	-				+0.2
2,607,420	+				+0.2
2,607,420	+				+1.1
2,607,420	+				+1.7
2,607,420	+				-1.0
2,607,420	+				+1.3
2,607,420	+				-1.6
2,607,420	+				-1.9
2,607,428	-				+1.4
2,607,428	-				+0.1
2,607,428	-				-2.4
2,607,428	-				-0.1
2,607,428	-				-1.2
2,607,428	-				-0.5
2,607,428	-				-2.2
2,607,443	+				-1.7
2,607,443	+				-0.4
2,607,443	+				+0.3
2,607,443	-				+0.0
2,607,449	+				+0.9
2,607,449	+				-0.2
2,607,452	-				+0.8
2,607,463	-				-1.1
2,607,472	+				-0.8
2,607,475	-				-1.0
2,607,480	-				+1.2
2,607,486	+				-2.1
2,607,491	+				-0.5
2,607,494	-				-1.5
2,607,504	-				-0.1
2,607,504	-				+0.9
2,607,518	+				-0.5
2,607,540	-				+0.3
2,607,546	+				+0.6
2,607,546	+				-0.1
2,607,554	-				+1.5
2,607,583	+		GFF2591	0.13	+0.3
2,607,583	+		GFF2591	0.13	+1.0
2,607,583	+		GFF2591	0.13	-0.7
2,607,583	+		GFF2591	0.13	-1.1
2,607,585	+		GFF2591	0.13	-0.3
2,607,585	+		GFF2591	0.13	-1.6
2,607,590	+		GFF2591	0.13	-0.8
2,607,591	-		GFF2591	0.13	-1.4
2,607,591	-		GFF2591	0.13	-2.2
2,607,591	-		GFF2591	0.13	+0.0
2,607,591	-		GFF2591	0.13	+1.0
2,607,591	-		GFF2591	0.13	-0.2
2,607,591	-		GFF2591	0.13	-0.5
2,607,591	-		GFF2591	0.13	-0.4
2,607,593	+		GFF2591	0.14	+1.1
2,607,593	-		GFF2591	0.14	+0.6
2,607,598	+		GFF2591	0.14	-1.1
2,607,598	+		GFF2591	0.14	+0.1
2,607,603	+		GFF2591	0.15	+0.3
2,607,603	+		GFF2591	0.15	-2.4
2,607,606	-		GFF2591	0.15	+0.6
2,607,648	+		GFF2591	0.20	-1.0
2,607,648	+		GFF2591	0.20	+0.0
2,607,648	+		GFF2591	0.20	-1.1
2,607,648	+		GFF2591	0.20	-0.0
2,607,656	-		GFF2591	0.20	+0.1
2,607,656	-		GFF2591	0.20	-0.4
2,607,658	+		GFF2591	0.21	-0.8
2,607,673	+		GFF2591	0.22	-0.4
2,607,676	-		GFF2591	0.23	-1.5
2,607,696	+		GFF2591	0.25	+0.5
2,607,697	+		GFF2591	0.25	-0.2
2,607,704	-		GFF2591	0.26	-1.1
2,607,727	-		GFF2591	0.28	+0.2
2,607,741	+		GFF2591	0.30	-1.0
2,607,749	-		GFF2591	0.31	-0.5
2,607,773	+		GFF2591	0.33	-0.7
2,607,777	-		GFF2591	0.34	-2.3
2,607,778	+		GFF2591	0.34	+1.0
2,607,778	+		GFF2591	0.34	-0.1
2,607,778	+		GFF2591	0.34	-0.4
2,607,778	+		GFF2591	0.34	+0.3
2,607,778	+		GFF2591	0.34	+0.0
2,607,778	+		GFF2591	0.34	-0.0
2,607,778	+		GFF2591	0.34	-0.4
2,607,786	-		GFF2591	0.35	-1.7
2,607,786	-		GFF2591	0.35	+0.9
2,607,786	-		GFF2591	0.35	-0.7
2,607,786	-		GFF2591	0.35	+0.5
2,607,786	-		GFF2591	0.35	-1.7
2,607,786	-		GFF2591	0.35	+0.5
2,607,786	-		GFF2591	0.35	-1.7
2,607,786	-		GFF2591	0.35	-0.7
2,607,792	+		GFF2591	0.35	+0.4
2,607,792	+		GFF2591	0.35	+0.1
2,607,792	-		GFF2591	0.35	-1.2
2,607,792	-		GFF2591	0.35	-1.0
2,607,792	-		GFF2591	0.35	+0.2
2,607,792	-		GFF2591	0.35	-1.4
2,607,792	-		GFF2591	0.35	+0.7
2,607,800	+		GFF2591	0.36	-0.4
2,607,800	+		GFF2591	0.36	-1.7
2,607,800	-		GFF2591	0.36	-1.9
2,607,809	+		GFF2591	0.37	+0.1
2,607,838	+		GFF2591	0.40	+0.6
2,607,842	-		GFF2591	0.41	+0.6
2,607,843	+		GFF2591	0.41	+0.1
2,607,850	+		GFF2591	0.41	+0.4
2,607,850	+		GFF2591	0.41	+0.8
2,607,850	+		GFF2591	0.41	-0.2
2,607,850	+		GFF2591	0.41	-1.4
2,607,851	+		GFF2591	0.42	+0.8
2,607,851	-		GFF2591	0.42	-0.8
2,607,852	-		GFF2591	0.42	+0.6
2,607,858	-		GFF2591	0.42	+0.2
2,607,882	+		GFF2591	0.45	-0.4
2,607,890	-		GFF2591	0.46	+0.8
2,607,913	-		GFF2591	0.48	-0.2
2,607,922	+		GFF2591	0.49	+1.7
2,607,928	+		GFF2591	0.50	+0.5
2,607,929	+		GFF2591	0.50	-0.7
2,607,936	-		GFF2591	0.51	+0.4
2,607,936	-		GFF2591	0.51	-2.4
2,607,936	-		GFF2591	0.51	-1.8
2,607,951	+		GFF2591	0.52	-1.5
2,607,959	-		GFF2591	0.53	+0.0
2,607,959	-		GFF2591	0.53	-1.5
2,607,975	+		GFF2591	0.55	-0.4
2,608,024	+		GFF2591	0.60	-0.4
2,608,032	-		GFF2591	0.61	-0.0
2,608,032	-		GFF2591	0.61	-1.2
2,608,032	-		GFF2591	0.61	+0.2
2,608,039	-		GFF2591	0.62	+1.2
2,608,071	+		GFF2591	0.65	+0.2
2,608,071	+		GFF2591	0.65	-0.9
2,608,071	+		GFF2591	0.65	-0.3
2,608,071	+		GFF2591	0.65	-1.5
2,608,074	-		GFF2591	0.66	+0.4
2,608,074	-		GFF2591	0.66	+0.1
2,608,079	-		GFF2591	0.66	+0.8
2,608,084	-		GFF2591	0.67	-1.7
2,608,106	+		GFF2591	0.69	-1.7
2,608,108	+		GFF2591	0.69	-0.7
2,608,108	+		GFF2591	0.69	+0.4
2,608,116	-		GFF2591	0.70	-0.1
2,608,118	+		GFF2591	0.70	-1.7
2,608,118	+		GFF2591	0.70	+0.8
2,608,118	+		GFF2591	0.70	+0.2
2,608,126	-		GFF2591	0.71	-0.5
2,608,126	-		GFF2591	0.71	-0.4
2,608,129	+		GFF2591	0.72	-1.0
2,608,138	-		GFF2591	0.73	+0.6
2,608,148	+		GFF2591	0.74	-1.2
2,608,148	+		GFF2591	0.74	-0.2
2,608,171	-		GFF2591	0.76	-1.7
2,608,186	+		GFF2591	0.78	+0.7
2,608,186	+		GFF2591	0.78	-0.2
2,608,187	+		GFF2591	0.78	+0.3
2,608,219	+		GFF2591	0.81	+0.1
2,608,229	+		GFF2591	0.82	-0.4
2,608,237	-		GFF2591	0.83	+0.2
2,608,237	-		GFF2591	0.83	-0.8
2,608,278	+		GFF2591	0.88	+0.1
2,608,284	+		GFF2591	0.88	-0.2
2,608,302	-				-1.2
2,608,338	-				-0.7
2,608,360	+				-0.6
2,608,360	+				+0.3
2,608,360	+				-0.2
2,608,368	-				+0.0
2,608,459	-				+0.1
2,608,460	-				+0.1
2,608,476	-				-1.7
2,608,476	-				-2.5
2,608,496	+		GFF2592	0.12	-0.7
2,608,501	+		GFF2592	0.12	-0.1
2,608,501	+		GFF2592	0.12	-0.1
2,608,501	+		GFF2592	0.12	-0.3
2,608,501	+		GFF2592	0.12	-0.1
2,608,501	+		GFF2592	0.12	-0.8
2,608,509	-		GFF2592	0.14	+0.5
2,608,514	-		GFF2592	0.14	-1.9
2,608,538	+		GFF2592	0.17	+0.7
2,608,566	-		GFF2592	0.21	+0.6
2,608,568	+		GFF2592	0.21	+0.6
2,608,576	-		GFF2592	0.22	-1.5
2,608,576	-		GFF2592	0.22	+0.1
2,608,580	+		GFF2592	0.23	-1.2
2,608,630	-		GFF2592	0.30	+1.0
2,608,648	-		GFF2592	0.32	-0.4
2,608,667	-		GFF2592	0.35	-0.5
2,608,669	-		GFF2592	0.35	-1.4
2,608,674	+		GFF2592	0.35	-0.9
2,608,674	+		GFF2592	0.35	-0.5
2,608,682	-		GFF2592	0.37	+0.5
2,608,682	-		GFF2592	0.37	-1.7
2,608,682	-		GFF2592	0.37	+0.9
2,608,682	-		GFF2592	0.37	-0.4
2,608,690	+		GFF2592	0.38	-0.2
2,608,691	-		GFF2592	0.38	-0.9
2,608,734	+		GFF2592	0.43	-0.1
2,608,741	+		GFF2592	0.44	+1.1
2,608,742	-		GFF2592	0.44	+1.4
2,608,749	-		GFF2592	0.45	-0.7
2,608,750	+		GFF2592	0.46	+0.6
2,608,794	+		GFF2592	0.51	-0.1
2,608,858	+		GFF2592	0.60	+0.1
2,608,858	+		GFF2592	0.60	+1.0
2,608,858	+		GFF2592	0.60	-0.5
2,608,863	+		GFF2592	0.61	+0.5
2,608,866	-		GFF2592	0.61	-0.0
2,608,866	-		GFF2592	0.61	+0.1
2,608,873	+		GFF2592	0.62	+0.8
2,608,896	-		GFF2592	0.65	+0.0
2,608,909	+		GFF2592	0.67	-2.7
2,608,909	+		GFF2592	0.67	-1.6
2,608,909	+		GFF2592	0.67	+0.8
2,608,909	+		GFF2592	0.67	-0.3
2,608,913	+		GFF2592	0.67	-0.3
2,608,934	-		GFF2592	0.70	+0.0
2,608,947	+		GFF2592	0.72	+1.6
2,608,947	+		GFF2592	0.72	+0.4
2,608,955	-		GFF2592	0.73	-0.2
2,608,955	-		GFF2592	0.73	-0.2
2,608,960	-		GFF2592	0.73	+0.1
2,608,960	-		GFF2592	0.73	+0.1
2,608,976	+		GFF2592	0.76	+1.4
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