Strain Fitness in Sphingobium sp. HT1-2 around GFF2589

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,603,927	+		GFF2588	0.54	-0.2
2,603,976	+		GFF2588	0.57	+0.7
2,603,980	+		GFF2588	0.57	+0.6
2,603,984	-		GFF2588	0.57	-0.7
2,603,984	-		GFF2588	0.57	-0.1
2,603,984	-		GFF2588	0.57	-1.2
2,603,984	-		GFF2588	0.57	-0.9
2,603,986	+		GFF2588	0.57	+0.9
2,603,989	-		GFF2588	0.57	-1.6
2,604,013	+		GFF2588	0.59	+0.7
2,604,014	+		GFF2588	0.59	-1.6
2,604,022	-		GFF2588	0.59	-2.8
2,604,049	+		GFF2588	0.61	-1.1
2,604,075	+		GFF2588	0.62	-1.4
2,604,075	+		GFF2588	0.62	+0.1
2,604,083	-		GFF2588	0.63	-1.9
2,604,116	-		GFF2588	0.64	-2.4
2,604,116	-		GFF2588	0.64	+0.2
2,604,138	-		GFF2588	0.66	-0.2
2,604,151	+		GFF2588	0.66	-0.9
2,604,202	-		GFF2588	0.69	-0.2
2,604,214	-		GFF2588	0.70	+0.2
2,604,220	-		GFF2588	0.70	-0.5
2,604,221	-		GFF2588	0.70	-0.8
2,604,221	-		GFF2588	0.70	-0.9
2,604,243	+		GFF2588	0.71	+2.1
2,604,243	+		GFF2588	0.71	+0.8
2,604,251	+		GFF2588	0.72	+0.5
2,604,251	-		GFF2588	0.72	+1.2
2,604,260	-		GFF2588	0.72	-0.1
2,604,302	+		GFF2588	0.75	-0.7
2,604,310	-		GFF2588	0.75	-0.5
2,604,318	+		GFF2588	0.76	+1.0
2,604,318	+		GFF2588	0.76	+0.9
2,604,318	+		GFF2588	0.76	+0.3
2,604,326	-		GFF2588	0.76	-0.2
2,604,361	-		GFF2588	0.78	-0.9
2,604,396	+		GFF2588	0.80	-0.1
2,604,401	+		GFF2588	0.80	-1.6
2,604,401	+		GFF2588	0.80	-0.4
2,604,401	+		GFF2588	0.80	-0.9
2,604,401	+		GFF2588	0.80	-0.3
2,604,401	+		GFF2588	0.80	-1.9
2,604,401	+		GFF2588	0.80	-1.9
2,604,401	+		GFF2588	0.80	-1.4
2,604,406	+		GFF2588	0.80	-1.0
2,604,406	+		GFF2588	0.80	+1.1
2,604,406	+		GFF2588	0.80	-1.3
2,604,409	-		GFF2588	0.81	+0.8
2,604,409	-		GFF2588	0.81	+0.2
2,604,409	-		GFF2588	0.81	-0.3
2,604,409	-		GFF2588	0.81	+2.0
2,604,409	-		GFF2588	0.81	-0.6
2,604,409	-		GFF2588	0.81	-0.6
2,604,409	-		GFF2588	0.81	+0.2
2,604,409	-		GFF2588	0.81	-0.3
2,604,409	-		GFF2588	0.81	+0.0
2,604,409	-		GFF2588	0.81	-0.4
2,604,409	-		GFF2588	0.81	-1.4
2,604,430	+		GFF2588	0.82	-0.2
2,604,430	+		GFF2588	0.82	-0.0
2,604,437	+		GFF2588	0.82	-0.9
2,604,437	+		GFF2588	0.82	-0.2
2,604,442	+		GFF2588	0.82	-1.6
2,604,449	+		GFF2588	0.83	-1.1
2,604,450	+		GFF2588	0.83	+0.1
2,604,457	+		GFF2588	0.83	-0.5
2,604,457	+		GFF2588	0.83	+0.2
2,604,463	-		GFF2588	0.84	+0.2
2,604,495	-		GFF2588	0.85	+2.4
2,604,500	-		GFF2588	0.86	-0.2
2,604,502	+		GFF2588	0.86	-0.2
2,604,502	+		GFF2588	0.86	+0.6
2,604,510	-		GFF2588	0.86	+0.2
2,604,530	+		GFF2588	0.87	-1.1
2,604,530	+		GFF2588	0.87	-0.0
2,604,532	+		GFF2588	0.87	+1.1
2,604,532	+		GFF2588	0.87	-0.1
2,604,538	-		GFF2588	0.88	+1.6
2,604,583	-				-1.4
2,604,614	+				+1.2
2,604,637	-				+0.7
2,604,668	+				-1.4
2,604,671	+				-0.8
2,604,673	+				-0.5
2,604,673	+				-0.7
2,604,673	+				-0.6
2,604,673	+				-1.1
2,604,676	-				-1.6
2,604,681	-				+0.8
2,604,681	-				+0.9
2,604,681	-				+0.6
2,604,689	+				-0.5
2,604,697	-				-0.0
2,604,697	-				-0.6
2,604,717	+				+0.7
2,604,722	+				+0.1
2,604,727	+				-0.4
2,604,727	+				+0.4
2,604,727	+				+0.5
2,604,727	+				+0.9
2,604,727	+				+1.2
2,604,727	+				+0.8
2,604,729	+				-0.5
2,604,729	+				-0.9
2,604,729	+				-0.5
2,604,729	+				-0.2
2,604,730	-				-0.0
2,604,735	-				+0.2
2,604,735	-				-0.0
2,604,737	-				-0.9
2,604,796	+				-1.6
2,604,814	-				-0.3
2,604,825	-				+0.1
2,604,850	-				+0.3
2,604,852	+				-0.3
2,604,852	+				+0.6
2,604,860	-				-1.8
2,604,860	-				+0.1
2,604,860	-				-0.8
2,604,860	-				+0.0
2,604,880	+				-1.1
2,604,911	+				+0.3
2,604,926	-				+0.4
2,604,926	-				-1.3
2,604,931	+				-1.6
2,604,934	-				-0.7
2,604,934	-				+0.4
2,604,936	+				-1.9
2,604,941	+				-0.0
2,604,949	-				+0.6
2,604,949	-				-0.7
2,604,949	-				-0.8
2,604,949	-				-0.5
2,604,954	+				-0.5
2,604,954	+				-0.5
2,604,954	-				+0.0
2,604,959	+				+0.7
2,604,974	-				+0.6
2,604,977	+				+0.2
2,604,985	-				-1.6
2,604,985	-				-0.7
2,605,012	+				-0.5
2,605,012	+				+0.7
2,605,013	+				-0.4
2,605,031	-				+0.5
2,605,047	+				+0.5
2,605,047	+				+0.1
2,605,059	+				-0.4
2,605,059	+				-0.2
2,605,067	-				-0.2
2,605,067	-				+0.8
2,605,067	-				+0.4
2,605,067	-				-0.8
2,605,067	-				+1.5
2,605,067	-				+0.0
2,605,067	-				+0.2
2,605,082	+		GFF2589	0.11	+0.4
2,605,082	+		GFF2589	0.11	-0.3
2,605,088	-		GFF2589	0.11	+0.1
2,605,090	-		GFF2589	0.11	-1.2
2,605,096	+		GFF2589	0.11	+0.9
2,605,096	+		GFF2589	0.11	-0.9
2,605,116	+		GFF2589	0.13	-0.7
2,605,116	+		GFF2589	0.13	-1.6
2,605,145	-		GFF2589	0.15	-0.2
2,605,156	+		GFF2589	0.15	+1.0
2,605,158	+		GFF2589	0.15	+0.9
2,605,164	-		GFF2589	0.16	-0.6
2,605,164	-		GFF2589	0.16	+0.5
2,605,166	+		GFF2589	0.16	-0.7
2,605,181	+		GFF2589	0.17	-1.4
2,605,191	+		GFF2589	0.17	-0.5
2,605,203	+		GFF2589	0.18	+1.1
2,605,211	-		GFF2589	0.19	-0.2
2,605,211	-		GFF2589	0.19	-1.4
2,605,234	-		GFF2589	0.20	+0.4
2,605,258	-		GFF2589	0.22	+0.7
2,605,258	-		GFF2589	0.22	-1.2
2,605,264	-		GFF2589	0.22	+0.9
2,605,274	+		GFF2589	0.23	+0.0
2,605,274	+		GFF2589	0.23	+0.6
2,605,286	+		GFF2589	0.23	-1.0
2,605,313	+		GFF2589	0.25	+1.3
2,605,313	+		GFF2589	0.25	+0.6
2,605,313	+		GFF2589	0.25	-0.6
2,605,313	+		GFF2589	0.25	+0.5
2,605,313	+		GFF2589	0.25	+0.9
2,605,316	-		GFF2589	0.25	+0.0
2,605,318	+		GFF2589	0.25	-1.1
2,605,321	-		GFF2589	0.26	+0.1
2,605,321	-		GFF2589	0.26	-0.3
2,605,321	-		GFF2589	0.26	-0.1
2,605,321	-		GFF2589	0.26	+0.3
2,605,321	-		GFF2589	0.26	+0.4
2,605,330	+		GFF2589	0.26	-1.8
2,605,333	-		GFF2589	0.26	-0.2
2,605,338	-		GFF2589	0.27	-0.3
2,605,338	-		GFF2589	0.27	-1.2
2,605,340	+		GFF2589	0.27	-1.2
2,605,348	-		GFF2589	0.27	+0.8
2,605,378	-		GFF2589	0.29	-1.9
2,605,411	+		GFF2589	0.31	-1.5
2,605,419	-		GFF2589	0.32	-0.8
2,605,421	-		GFF2589	0.32	+0.0
2,605,421	-		GFF2589	0.32	-0.8
2,605,431	-		GFF2589	0.33	+1.0
2,605,450	+		GFF2589	0.34	-0.9
2,605,461	+		GFF2589	0.35	+0.6
2,605,465	+		GFF2589	0.35	-1.9
2,605,471	+		GFF2589	0.35	-0.2
2,605,476	+		GFF2589	0.35	+0.9
2,605,476	+		GFF2589	0.35	-2.8
2,605,484	-		GFF2589	0.36	-0.4
2,605,484	-		GFF2589	0.36	-0.5
2,605,484	-		GFF2589	0.36	-0.8
2,605,492	-		GFF2589	0.37	-1.7
2,605,519	+		GFF2589	0.38	+0.7
2,605,524	+		GFF2589	0.39	-0.1
2,605,527	-		GFF2589	0.39	-0.4
2,605,527	-		GFF2589	0.39	-1.4
2,605,532	-		GFF2589	0.39	-0.4
2,605,532	-		GFF2589	0.39	+1.3
2,605,536	+		GFF2589	0.39	-2.0
2,605,536	+		GFF2589	0.39	-0.1
2,605,543	+		GFF2589	0.40	-0.6
2,605,544	-		GFF2589	0.40	+0.7
2,605,544	-		GFF2589	0.40	-0.6
2,605,550	+		GFF2589	0.40	-0.5
2,605,558	-		GFF2589	0.41	+0.2
2,605,568	-		GFF2589	0.41	+0.7
2,605,571	+		GFF2589	0.42	-0.4
2,605,571	+		GFF2589	0.42	+0.6
2,605,571	+		GFF2589	0.42	+0.7
2,605,579	-		GFF2589	0.42	-0.6
2,605,593	+		GFF2589	0.43	-0.0
2,605,646	+		GFF2589	0.46	-0.2
2,605,654	-		GFF2589	0.47	-0.5
2,605,656	+		GFF2589	0.47	-0.5
2,605,656	+		GFF2589	0.47	+0.1
2,605,664	-		GFF2589	0.47	-0.4
2,605,666	+		GFF2589	0.48	+0.6
2,605,697	+		GFF2589	0.49	-0.8
2,605,697	+		GFF2589	0.49	+0.7
2,605,705	-		GFF2589	0.50	-1.2
2,605,726	-		GFF2589	0.51	+0.9
2,605,727	+		GFF2589	0.51	-0.8
2,605,731	+		GFF2589	0.52	+0.4
2,605,731	-		GFF2589	0.52	+0.0
2,605,739	-		GFF2589	0.52	-1.2
2,605,762	+		GFF2589	0.54	-0.7
2,605,770	-		GFF2589	0.54	-0.6
2,605,770	-		GFF2589	0.54	-0.5
2,605,782	-		GFF2589	0.55	-0.2
2,605,782	-		GFF2589	0.55	+0.1
2,605,804	+		GFF2589	0.56	-1.8
2,605,809	+		GFF2589	0.57	-0.4
2,605,809	+		GFF2589	0.57	+0.5
2,605,809	+		GFF2589	0.57	-0.6
2,605,809	+		GFF2589	0.57	+0.2
2,605,809	+		GFF2589	0.57	+0.2
2,605,809	+		GFF2589	0.57	-2.6
2,605,809	+		GFF2589	0.57	-0.1
2,605,809	+		GFF2589	0.57	-1.0
2,605,809	+		GFF2589	0.57	-1.0
2,605,812	-		GFF2589	0.57	+0.8
2,605,812	-		GFF2589	0.57	-0.7
2,605,812	-		GFF2589	0.57	+1.2
2,605,812	-		GFF2589	0.57	-0.3
2,605,812	-		GFF2589	0.57	+0.6
2,605,812	-		GFF2589	0.57	-0.2
2,605,817	-		GFF2589	0.57	-1.5
2,605,817	-		GFF2589	0.57	+0.2
2,605,817	-		GFF2589	0.57	-1.5
2,605,817	-		GFF2589	0.57	-0.1
2,605,817	-		GFF2589	0.57	-0.6
2,605,817	-		GFF2589	0.57	+0.6
2,605,817	-		GFF2589	0.57	+0.4
2,605,817	-		GFF2589	0.57	-0.8
2,605,817	-		GFF2589	0.57	-1.7
2,605,817	-		GFF2589	0.57	-1.2
2,605,822	-		GFF2589	0.57	+0.5
2,605,842	+		GFF2589	0.59	-0.6
2,605,845	-		GFF2589	0.59	+0.8
2,605,847	+		GFF2589	0.59	+0.0
2,605,847	+		GFF2589	0.59	-0.1
2,605,850	-		GFF2589	0.59	-1.2
2,605,852	+		GFF2589	0.59	+0.3
2,605,860	-		GFF2589	0.60	+0.2
2,605,861	-		GFF2589	0.60	+0.2
2,605,897	+		GFF2589	0.62	-1.5
2,605,900	-		GFF2589	0.62	-1.0
2,605,902	+		GFF2589	0.62	-0.9
2,605,902	+		GFF2589	0.62	-1.9
2,605,910	-		GFF2589	0.63	-0.3
2,605,915	-		GFF2589	0.63	-1.1
2,605,957	+		GFF2589	0.66	-0.2
2,605,957	+		GFF2589	0.66	-1.6
2,605,982	+		GFF2589	0.68	+0.2
2,605,985	-		GFF2589	0.68	+1.4
2,606,012	+		GFF2589	0.69	-0.0
2,606,020	-		GFF2589	0.70	-0.7
2,606,026	-		GFF2589	0.70	-1.4
2,606,026	-		GFF2589	0.70	-0.6
2,606,027	+		GFF2589	0.70	-0.7
2,606,032	+		GFF2589	0.71	+0.8
2,606,035	-		GFF2589	0.71	-1.9
2,606,037	+		GFF2589	0.71	-1.9
2,606,048	+		GFF2589	0.72	-1.0
2,606,056	-		GFF2589	0.72	+0.8
2,606,058	+		GFF2589	0.72	+0.7
2,606,066	-		GFF2589	0.73	-0.5
2,606,066	-		GFF2589	0.73	-1.5
2,606,066	-		GFF2589	0.73	+0.8
2,606,066	-		GFF2589	0.73	-0.4
2,606,087	-		GFF2589	0.74	+0.9
2,606,089	+		GFF2589	0.74	+0.7
2,606,091	+		GFF2589	0.74	-0.2
2,606,097	-		GFF2589	0.75	-1.1
2,606,109	-		GFF2589	0.76	-0.9
2,606,110	-		GFF2589	0.76	-0.4
2,606,134	-		GFF2589	0.77	-1.2
2,606,157	+		GFF2589	0.79	-0.6
2,606,157	+		GFF2589	0.79	-0.7
2,606,157	+		GFF2589	0.79	-2.2
2,606,157	+		GFF2589	0.79	-0.9
2,606,157	+		GFF2589	0.79	-0.6
2,606,165	-		GFF2589	0.79	-1.0
2,606,165	-		GFF2589	0.79	-0.0
2,606,165	-		GFF2589	0.79	-0.2
2,606,165	-		GFF2589	0.79	-0.1
2,606,165	-		GFF2589	0.79	+0.0
2,606,174	+		GFF2589	0.80	-0.6
2,606,177	-		GFF2589	0.80	+0.7
2,606,205	+		GFF2589	0.82	+1.4
2,606,221	-		GFF2589	0.83	-0.9
2,606,231	-		GFF2589	0.83	-0.1
2,606,245	-		GFF2589	0.84	+0.8
2,606,279	+		GFF2589	0.86	+0.3
2,606,279	+		GFF2589	0.86	-0.8
2,606,279	+		GFF2589	0.86	-1.6
2,606,287	-		GFF2589	0.87	+0.0
2,606,287	-		GFF2589	0.87	+0.3
2,606,287	-		GFF2589	0.87	+0.2
2,606,291	+		GFF2589	0.87	-0.7
2,606,298	-		GFF2589	0.88	+0.1
2,606,302	+		GFF2589	0.88	-1.7
2,606,316	+		GFF2589	0.89	+0.4
2,606,390	+				+0.9
2,606,396	-				-0.8
2,606,398	-				+0.4
2,606,398	-				+0.9
2,606,401	-				-0.6
2,606,418	+				-1.0
2,606,444	+				+1.0
2,606,474	+				-0.4
2,606,482	-				-2.0
2,606,512	+				-0.3
2,606,513	+				-0.5
2,606,515	-				+0.0
2,606,521	-				-0.4
2,606,521	-				-0.9
2,606,550	+				-2.1
2,606,594	-		GFF2590	0.11	-1.1
2,606,609	+		GFF2590	0.12	-0.7
2,606,625	+		GFF2590	0.14	-0.8
2,606,625	+		GFF2590	0.14	-0.5
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2,606,748	-		GFF2590	0.26	-1.1
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2,606,766	+		GFF2590	0.28	-0.1
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2,606,766	+		GFF2590	0.28	+0.5
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2,606,774	-		GFF2590	0.29	-1.9
2,606,774	-		GFF2590	0.29	-0.3
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2,606,852	+		GFF2590	0.37	-1.8
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2,606,894	+		GFF2590	0.41	-0.3
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2,606,911	+		GFF2590	0.43	+0.1
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2,606,936	+		GFF2590	0.45	-1.7
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2,606,936	+		GFF2590	0.45	-0.8
2,606,936	+		GFF2590	0.45	+0.6
2,606,936	+		GFF2590	0.45	+0.3
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2,606,944	-		GFF2590	0.46	-1.2
2,606,944	-		GFF2590	0.46	+0.4
2,606,954	-		GFF2590	0.47	-1.2
2,606,968	+		GFF2590	0.49	+0.4
2,606,976	-		GFF2590	0.50	+1.5
2,606,992	+		GFF2590	0.51	+0.8
2,607,027	+		GFF2590	0.55	-2.2
2,607,035	-		GFF2590	0.56	-0.9
2,607,068	-		GFF2590	0.59	+0.1
2,607,100	+		GFF2590	0.62	-0.9
2,607,100	+		GFF2590	0.62	-0.2
2,607,101	+		GFF2590	0.62	+0.1
2,607,108	-		GFF2590	0.63	-1.8
2,607,108	-		GFF2590	0.63	-1.0
2,607,118	-		GFF2590	0.64	-0.1
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2,607,127	+		GFF2590	0.65	+1.0
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2,607,127	+		GFF2590	0.65	-0.6
2,607,127	+		GFF2590	0.65	-0.8
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2,607,185	+		GFF2590	0.71	-1.8
2,607,192	+		GFF2590	0.72	-0.8
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2,607,230	+		GFF2590	0.75	-1.2
2,607,238	-		GFF2590	0.76	-1.9
2,607,285	+		GFF2590	0.81	-1.4
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2,607,328	+		GFF2590	0.85	-1.1
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2,607,328	+		GFF2590	0.85	-1.9
2,607,328	+		GFF2590	0.85	+0.8
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2,607,351	+		GFF2590	0.88	-0.7
2,607,367	+		GFF2590	0.89	-1.2
2,607,377	+				+0.3
2,607,377	+				+0.1
2,607,389	+				-0.3
2,607,390	+				-1.0
2,607,396	+				-2.4
2,607,396	-				-1.2
2,607,397	+				-1.4
2,607,397	+				+0.9
2,607,403	-				-0.5
2,607,403	-				+1.5
2,607,403	-				-0.4
2,607,404	-				-1.9
2,607,415	+				-0.9
2,607,419	-				+0.2
2,607,420	+				+0.2
2,607,420	+				+1.1
2,607,420	+				+1.7
2,607,420	+				-1.0
2,607,420	+				+1.3
2,607,420	+				-1.6
2,607,420	+				-1.9
2,607,428	-				+1.4
2,607,428	-				+0.1
2,607,428	-				-2.4
2,607,428	-				-0.1
2,607,428	-				-1.2
2,607,428	-				-0.5
2,607,428	-				-2.2
2,607,443	+				-1.7
2,607,443	+				-0.4
2,607,443	+				+0.3
2,607,443	-				+0.0
2,607,449	+				+0.9
2,607,449	+				-0.2
2,607,452	-				+0.8
2,607,463	-				-1.1
2,607,472	+				-0.8
2,607,475	-				-1.0
2,607,480	-				+1.2
2,607,486	+				-2.1
2,607,491	+				-0.5