Strain Fitness in Sphingobium sp. HT1-2 around GFF2536

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,550,783	-		GFF2534	0.88	+0.3
2,550,802	-				-0.7
2,550,807	+				+0.4
2,550,815	+				+0.0
2,550,817	+				+0.5
2,550,824	-				-1.2
2,550,824	-				+0.4
2,550,830	-				-0.9
2,550,844	+				-2.2
2,550,844	+				+0.5
2,550,845	-				-0.8
2,550,852	-				-1.2
2,550,852	-				+0.1
2,550,852	-				+0.6
2,550,852	-				+0.5
2,550,853	+				+1.1
2,550,854	-				-1.7
2,550,870	+				+0.2
2,550,870	+				-0.1
2,550,878	-				-1.7
2,550,878	-				-0.3
2,550,900	+				+0.2
2,550,900	+				+0.1
2,550,908	-				+0.7
2,550,910	+				+1.1
2,550,910	+				+0.4
2,551,763	+				-1.3
2,551,768	+				+0.2
2,551,769	+				+0.0
2,551,771	-				+0.0
2,551,771	-				+0.9
2,551,771	-				-0.7
2,551,775	+				+0.7
2,551,814	-				+0.4
2,551,824	-				-0.8
2,551,825	-				+0.2
2,551,837	-				+0.7
2,551,837	-				-3.2
2,551,844	-				+0.6
2,551,844	-				+0.7
2,551,844	-				-0.8
2,551,862	-				-1.5
2,551,866	+				+0.5
2,551,869	-				+1.1
2,551,872	+				-0.8
2,551,872	+				-0.7
2,551,872	+				+0.5
2,551,872	+				-1.8
2,551,872	+				+0.2
2,551,872	+				-0.8
2,551,872	+				+0.1
2,551,879	-				+0.1
2,551,880	-				+0.2
2,551,880	-				-0.5
2,551,880	-				-0.8
2,551,880	-				+0.2
2,551,880	-				+0.7
2,551,880	-				-1.5
2,551,880	-				-0.3
2,551,893	+				-0.6
2,551,901	-				-1.4
2,551,913	+				+0.7
2,551,921	-				-1.2
2,551,921	-				-0.6
2,551,928	+				-0.4
2,551,928	+				-0.6
2,551,930	+				+0.7
2,551,930	+				+0.3
2,551,937	-		GFF2536	0.10	-1.5
2,551,937	-		GFF2536	0.10	-0.4
2,551,938	-		GFF2536	0.10	-0.9
2,551,939	-		GFF2536	0.10	+0.4
2,551,951	+		GFF2536	0.11	-0.1
2,551,951	+		GFF2536	0.11	-0.8
2,551,957	+		GFF2536	0.11	+0.1
2,551,959	-		GFF2536	0.11	-0.5
2,551,974	+		GFF2536	0.12	-0.5
2,551,982	+		GFF2536	0.13	+0.0
2,551,982	+		GFF2536	0.13	+0.2
2,551,984	+		GFF2536	0.13	-0.6
2,551,990	-		GFF2536	0.13	-0.8
2,551,992	-		GFF2536	0.14	-1.2
2,551,993	+		GFF2536	0.14	-1.1
2,551,996	-		GFF2536	0.14	-1.2
2,551,997	-		GFF2536	0.14	-0.5
2,552,006	-		GFF2536	0.14	-1.1
2,552,011	+		GFF2536	0.15	+0.1
2,552,019	-		GFF2536	0.15	+1.0
2,552,070	+		GFF2536	0.19	-0.6
2,552,070	+		GFF2536	0.19	-1.0
2,552,070	+		GFF2536	0.19	-0.2
2,552,070	+		GFF2536	0.19	-1.0
2,552,070	+		GFF2536	0.19	-0.8
2,552,070	+		GFF2536	0.19	+1.1
2,552,070	+		GFF2536	0.19	-0.1
2,552,078	-		GFF2536	0.19	-0.9
2,552,078	-		GFF2536	0.19	+0.3
2,552,078	-		GFF2536	0.19	-3.5
2,552,086	+		GFF2536	0.20	+0.2
2,552,086	+		GFF2536	0.20	-0.3
2,552,086	+		GFF2536	0.20	-1.0
2,552,086	+		GFF2536	0.20	+1.7
2,552,086	+		GFF2536	0.20	-1.1
2,552,090	+		GFF2536	0.20	-0.6
2,552,090	+		GFF2536	0.20	-0.1
2,552,094	-		GFF2536	0.20	-0.5
2,552,094	-		GFF2536	0.20	-0.8
2,552,094	-		GFF2536	0.20	-1.4
2,552,094	-		GFF2536	0.20	-0.7
2,552,098	-		GFF2536	0.20	-1.8
2,552,098	-		GFF2536	0.20	+1.0
2,552,098	-		GFF2536	0.20	-0.8
2,552,128	+		GFF2536	0.22	+0.4
2,552,147	+		GFF2536	0.23	+0.3
2,552,147	+		GFF2536	0.23	+0.3
2,552,147	+		GFF2536	0.23	-0.2
2,552,155	-		GFF2536	0.24	-0.5
2,552,155	-		GFF2536	0.24	-0.3
2,552,155	-		GFF2536	0.24	-0.2
2,552,155	-		GFF2536	0.24	-1.3
2,552,155	-		GFF2536	0.24	+1.4
2,552,159	-		GFF2536	0.24	+0.2
2,552,162	+		GFF2536	0.24	-1.8
2,552,174	-		GFF2536	0.25	+0.4
2,552,174	-		GFF2536	0.25	-1.7
2,552,177	+		GFF2536	0.25	-0.7
2,552,180	-		GFF2536	0.25	-0.1
2,552,184	-		GFF2536	0.26	-1.3
2,552,185	-		GFF2536	0.26	-1.5
2,552,197	+		GFF2536	0.27	-0.3
2,552,199	-		GFF2536	0.27	-1.8
2,552,205	-		GFF2536	0.27	+0.9
2,552,205	-		GFF2536	0.27	-0.6
2,552,231	-		GFF2536	0.29	+0.4
2,552,231	-		GFF2536	0.29	-0.9
2,552,231	-		GFF2536	0.29	-0.3
2,552,233	+		GFF2536	0.29	-2.1
2,552,233	+		GFF2536	0.29	-0.7
2,552,254	-		GFF2536	0.30	-1.8
2,552,254	-		GFF2536	0.30	-0.8
2,552,256	+		GFF2536	0.30	-0.1
2,552,262	-		GFF2536	0.31	-0.8
2,552,279	-		GFF2536	0.32	-0.8
2,552,319	-		GFF2536	0.34	-0.2
2,552,334	+		GFF2536	0.35	-2.0
2,552,334	-		GFF2536	0.35	+0.1
2,552,336	-		GFF2536	0.35	-0.8
2,552,346	+		GFF2536	0.36	+0.1
2,552,369	-		GFF2536	0.37	+0.8
2,552,378	+		GFF2536	0.38	-0.6
2,552,383	+		GFF2536	0.38	-0.1
2,552,391	-		GFF2536	0.39	-0.2
2,552,391	-		GFF2536	0.39	-0.2
2,552,404	-		GFF2536	0.40	-0.9
2,552,404	-		GFF2536	0.40	+0.5
2,552,415	+		GFF2536	0.40	+0.5
2,552,417	+		GFF2536	0.40	-0.7
2,552,419	+		GFF2536	0.41	+0.1
2,552,419	+		GFF2536	0.41	+0.6
2,552,422	-		GFF2536	0.41	-0.2
2,552,427	-		GFF2536	0.41	+0.5
2,552,427	-		GFF2536	0.41	+0.5
2,552,427	-		GFF2536	0.41	+0.8
2,552,427	-		GFF2536	0.41	-0.1
2,552,427	-		GFF2536	0.41	-1.1
2,552,427	-		GFF2536	0.41	-1.2
2,552,459	+		GFF2536	0.43	+0.1
2,552,462	-		GFF2536	0.43	+0.4
2,552,475	-		GFF2536	0.44	+0.3
2,552,479	+		GFF2536	0.44	+0.3
2,552,487	-		GFF2536	0.45	+0.2
2,552,528	-		GFF2536	0.48	+1.6
2,552,532	+		GFF2536	0.48	+0.1
2,552,549	+		GFF2536	0.49	-1.0
2,552,593	+		GFF2536	0.52	-0.8
2,552,595	-		GFF2536	0.52	-0.7
2,552,616	+		GFF2536	0.53	-0.7
2,552,620	+		GFF2536	0.53	+1.1
2,552,620	+		GFF2536	0.53	-0.1
2,552,620	+		GFF2536	0.53	+0.9
2,552,620	+		GFF2536	0.53	+1.1
2,552,620	+		GFF2536	0.53	-0.2
2,552,624	-		GFF2536	0.54	+0.5
2,552,624	-		GFF2536	0.54	+0.7
2,552,652	-		GFF2536	0.55	-0.2
2,552,662	+		GFF2536	0.56	+0.8
2,552,662	+		GFF2536	0.56	+0.3
2,552,665	-		GFF2536	0.56	-0.2
2,552,665	-		GFF2536	0.56	-1.2
2,552,665	-		GFF2536	0.56	+0.5
2,552,665	-		GFF2536	0.56	-1.8
2,552,670	-		GFF2536	0.57	-0.3
2,552,684	-		GFF2536	0.57	-0.2
2,552,692	+		GFF2536	0.58	+0.4
2,552,714	+		GFF2536	0.59	+0.3
2,552,722	-		GFF2536	0.60	-1.0
2,552,735	-		GFF2536	0.61	-1.8
2,552,735	-		GFF2536	0.61	+0.2
2,552,743	+		GFF2536	0.61	-0.3
2,552,747	+		GFF2536	0.61	+0.2
2,552,756	-		GFF2536	0.62	-1.5
2,552,776	-		GFF2536	0.63	-2.0
2,552,783	-		GFF2536	0.64	-0.9
2,552,783	-		GFF2536	0.64	+0.2
2,552,783	-		GFF2536	0.64	+0.2
2,552,790	+		GFF2536	0.64	-0.6
2,552,805	+		GFF2536	0.65	-0.5
2,552,840	+		GFF2536	0.67	-0.2
2,552,840	+		GFF2536	0.67	-0.7
2,552,841	+		GFF2536	0.67	-0.4
2,552,843	-		GFF2536	0.67	-0.3
2,552,845	+		GFF2536	0.68	-0.8
2,552,848	-		GFF2536	0.68	-0.3
2,552,848	-		GFF2536	0.68	-0.1
2,552,848	-		GFF2536	0.68	-0.7
2,552,848	-		GFF2536	0.68	-0.4
2,552,848	-		GFF2536	0.68	-0.2
2,552,853	-		GFF2536	0.68	-0.8
2,552,891	+		GFF2536	0.71	-0.5
2,552,891	+		GFF2536	0.71	+0.4
2,552,894	-		GFF2536	0.71	-0.6
2,552,899	-		GFF2536	0.71	-2.4
2,552,899	-		GFF2536	0.71	-2.3
2,552,910	+		GFF2536	0.72	-1.9
2,552,910	+		GFF2536	0.72	+1.0
2,552,910	+		GFF2536	0.72	-1.2
2,552,913	-		GFF2536	0.72	+0.4
2,552,915	+		GFF2536	0.72	-1.3
2,552,915	+		GFF2536	0.72	-1.2
2,552,923	-		GFF2536	0.73	+0.1
2,552,923	-		GFF2536	0.73	+0.5
2,552,923	-		GFF2536	0.73	-2.7
2,552,923	-		GFF2536	0.73	-0.2
2,552,929	+		GFF2536	0.73	+0.6
2,552,979	-		GFF2536	0.76	-1.5
2,553,041	-		GFF2536	0.80	-0.9
2,553,043	+		GFF2536	0.80	-1.2
2,553,048	+		GFF2536	0.80	-0.3
2,553,048	+		GFF2536	0.80	-0.5
2,553,048	+		GFF2536	0.80	+0.4
2,553,048	+		GFF2536	0.80	+0.5
2,553,048	+		GFF2536	0.80	+0.1
2,553,051	-		GFF2536	0.81	-0.8
2,553,056	-		GFF2536	0.81	-1.3
2,553,056	-		GFF2536	0.81	-1.6
2,553,056	-		GFF2536	0.81	-0.6
2,553,056	-		GFF2536	0.81	+0.5
2,553,056	-		GFF2536	0.81	+0.7
2,553,056	-		GFF2536	0.81	-0.7
2,553,056	-		GFF2536	0.81	+0.1
2,553,061	-		GFF2536	0.81	-1.2
2,553,127	+		GFF2536	0.85	-0.6
2,553,127	+		GFF2536	0.85	+1.0
2,553,161	-		GFF2536	0.88	-1.5
2,553,185	+		GFF2536	0.89	+0.7
2,553,186	+		GFF2536	0.89	-0.6
2,553,186	+		GFF2536	0.89	-0.5
2,553,186	+		GFF2536	0.89	-1.1
2,553,186	+		GFF2536	0.89	-0.3
2,553,193	-		GFF2536	0.90	+0.9
2,553,194	-		GFF2536	0.90	-1.1
2,553,201	+				-0.7
2,553,201	+				+0.3
2,553,204	-				+1.3
2,553,211	-				-0.5
2,553,218	-				+1.2
2,553,222	+				-0.6
2,553,222	+				-0.7
2,553,260	-				-0.1
2,553,282	+				-1.7
2,553,282	+				+0.8
2,553,282	+				-1.3
2,553,286	+				-1.3
2,553,294	+				+0.4
2,553,294	-				+0.0
2,553,300	-				+0.4
2,553,358	-				+0.7
2,553,388	+				-1.3
2,553,388	+				-0.5
2,553,396	-				-0.3
2,553,396	-				-0.6
2,553,400	+				-1.3
2,553,408	-				+0.6
2,553,408	-				-1.1
2,553,408	-				-0.1
2,553,408	-				-1.6
2,553,418	-				+0.2
2,553,418	-				-0.6
2,553,438	+				+0.1
2,553,439	+				+0.7
2,553,461	-				-0.3
2,553,470	+				-0.4
2,553,478	-				+1.3
2,553,483	+				-0.7
2,553,486	-				-0.3
2,553,488	+				+0.7
2,553,493	+				-0.3
2,553,493	+				+0.2
2,553,493	+				+1.0
2,553,493	+				-0.3
2,553,493	+				-1.3
2,553,493	+				-1.3
2,553,493	+				-1.3
2,553,493	+				-0.3
2,553,493	+				+0.9
2,553,501	-				-1.2
2,553,501	-				-0.5
2,553,501	-				-0.4
2,553,501	-				-0.3
2,553,501	-				+0.5
2,553,501	-				-0.8
2,553,501	-				+0.5
2,553,501	-				+0.1
2,553,501	-				-1.1
2,553,501	-				+0.2
2,553,505	+				+0.1
2,553,505	+				-1.6
2,553,505	+				-1.4
2,553,505	+				-0.2
2,553,505	+				-0.1
2,553,505	+				-1.5
2,553,505	+				+0.5
2,553,505	+				+0.1
2,553,505	+				-1.8
2,553,512	+				-1.9
2,553,513	-				+0.3
2,553,513	-				+0.2
2,553,513	-				-0.5
2,553,513	-				-0.8
2,553,513	-				+0.4
2,553,513	-				-0.1
2,553,513	-				-0.0
2,553,513	-				-1.3
2,553,513	-				+1.3
2,553,517	+				-2.1
2,553,530	+				+0.2
2,553,530	+				-0.7
2,553,531	+				-0.9
2,553,531	-				+0.5
2,553,536	+				+0.2
2,553,536	+				+0.7
2,553,536	+				-2.1
2,553,536	+				-0.3
2,553,539	-				+0.1
2,553,539	-				-1.8
2,553,541	+				+0.5
2,553,544	-				+0.2
2,553,544	-				+0.3
2,553,544	-				-0.5
2,553,554	+				-1.9
2,553,565	-				-3.0
2,553,597	+		GFF2537	0.12	-0.6
2,553,598	+		GFF2537	0.12	+0.6
2,553,598	+		GFF2537	0.12	-0.0
2,553,606	-		GFF2537	0.13	-1.8
2,553,606	-		GFF2537	0.13	+0.1
2,553,606	-		GFF2537	0.13	-0.0
2,553,611	-		GFF2537	0.14	+0.8
2,553,623	+		GFF2537	0.15	-1.3
2,553,628	+		GFF2537	0.15	-1.6
2,553,629	-		GFF2537	0.15	-0.6
2,553,666	-		GFF2537	0.19	-1.2
2,553,678	+		GFF2537	0.21	-1.0
2,553,681	+		GFF2537	0.21	+0.8
2,553,686	-		GFF2537	0.22	-0.1
2,553,740	-		GFF2537	0.27	-2.0
2,553,786	-		GFF2537	0.32	-1.0
2,553,786	-		GFF2537	0.32	-0.2
2,553,791	-		GFF2537	0.33	+0.2
2,553,800	+		GFF2537	0.34	+0.6
2,553,806	-		GFF2537	0.35	-0.9
2,553,808	-		GFF2537	0.35	-0.9
2,553,808	-		GFF2537	0.35	-1.3
2,553,813	-		GFF2537	0.35	+1.3
2,553,813	-		GFF2537	0.35	+0.8
2,553,813	-		GFF2537	0.35	-0.2
2,553,815	+		GFF2537	0.35	+0.4
2,553,815	+		GFF2537	0.35	-0.7
2,553,821	-		GFF2537	0.36	-1.1
2,553,860	+		GFF2537	0.40	+0.1
2,553,867	+		GFF2537	0.41	-1.3
2,553,867	+		GFF2537	0.41	+1.1
2,553,867	+		GFF2537	0.41	-0.2
2,553,871	+		GFF2537	0.42	+1.9
2,553,880	-		GFF2537	0.42	+0.9
2,553,880	-		GFF2537	0.42	+1.3
2,553,887	-		GFF2537	0.43	-0.7
2,553,892	-		GFF2537	0.44	-0.9
2,553,925	+		GFF2537	0.47	-0.6
2,553,930	+		GFF2537	0.48	-2.1
2,553,930	+		GFF2537	0.48	-1.2
2,553,932	-		GFF2537	0.48	-1.5
2,553,932	-		GFF2537	0.48	-0.6
2,553,933	-		GFF2537	0.48	+1.7
2,553,936	+		GFF2537	0.48	-0.2
2,553,938	-		GFF2537	0.49	+0.9
2,553,962	+		GFF2537	0.51	-0.5
2,553,985	+		GFF2537	0.54	+1.1
2,553,985	+		GFF2537	0.54	+0.2
2,553,993	-		GFF2537	0.55	+0.4
2,553,994	-		GFF2537	0.55	+0.2
2,554,017	+		GFF2537	0.57	+0.5
2,554,017	+		GFF2537	0.57	+0.4
2,554,017	+		GFF2537	0.57	-1.3
2,554,024	-		GFF2537	0.58	-0.5
2,554,025	-		GFF2537	0.58	-0.8
2,554,037	+		GFF2537	0.59	+0.5
2,554,038	+		GFF2537	0.59	+0.2
2,554,103	+		GFF2537	0.66	+0.2
2,554,108	+		GFF2537	0.67	-1.7
2,554,122	+		GFF2537	0.68	+0.1
2,554,187	+		GFF2537	0.75	+1.0
2,554,187	+		GFF2537	0.75	-2.2
2,554,187	+		GFF2537	0.75	+0.1
2,554,187	+		GFF2537	0.75	-0.3
2,554,187	+		GFF2537	0.75	+0.2
2,554,187	+		GFF2537	0.75	-1.0
2,554,187	+		GFF2537	0.75	+0.3
2,554,187	+		GFF2537	0.75	-2.0
2,554,187	+		GFF2537	0.75	+0.7
2,554,188	-		GFF2537	0.76	-1.8
2,554,195	-		GFF2537	0.76	+0.4
2,554,195	-		GFF2537	0.76	-1.3
2,554,195	-		GFF2537	0.76	-0.4
2,554,195	-		GFF2537	0.76	+0.1
2,554,195	-		GFF2537	0.76	-1.6
2,554,195	-		GFF2537	0.76	+0.9
2,554,195	-		GFF2537	0.76	-0.1
2,554,231	+		GFF2537	0.80	+0.2
2,554,239	+		GFF2537	0.81	-0.1
2,554,240	+		GFF2537	0.81	-0.2
2,554,265	+		GFF2537	0.84	+0.6
2,554,271	-		GFF2537	0.85	-0.5
2,554,285	+		GFF2537	0.86	-0.6
2,554,293	-		GFF2537	0.87	-0.5
2,554,297	-		GFF2537	0.87	+0.5
2,554,332	-				+1.1
2,554,346	+				-1.3
2,554,346	+				-1.4