Strain Fitness in Sphingobium sp. HT1-2 around GFF2533

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,548,844	-		GFF2531	0.73	-1.1
2,548,844	-		GFF2531	0.73	-1.2
2,548,868	+		GFF2531	0.78	+0.1
2,548,869	-		GFF2531	0.79	-0.8
2,548,869	-		GFF2531	0.79	+0.3
2,548,874	-		GFF2531	0.80	-0.7
2,548,876	-		GFF2531	0.80	+0.8
2,548,876	-		GFF2531	0.80	+0.1
2,548,876	-		GFF2531	0.80	-0.0
2,548,885	-		GFF2531	0.82	+0.3
2,548,901	+		GFF2531	0.85	-0.1
2,548,909	-		GFF2531	0.87	-0.2
2,548,923	+		GFF2531	0.90	-2.1
2,548,931	-				-0.7
2,548,931	-				+1.0
2,548,936	+				-0.1
2,548,937	+				+0.4
2,548,937	+				-2.5
2,548,937	+				+0.7
2,548,937	+				-1.0
2,548,937	+				+0.4
2,548,937	+				+0.4
2,548,937	+				+0.0
2,548,937	+				-0.9
2,548,937	+				-0.2
2,548,937	+				+0.9
2,548,937	+				-0.4
2,548,937	+				+0.3
2,548,937	+				-1.5
2,548,937	+				+1.4
2,548,937	+				-0.5
2,548,937	+				+0.8
2,548,937	+				-0.7
2,548,937	+				+0.3
2,548,937	+				-0.8
2,548,937	+				+0.5
2,548,940	-				+0.1
2,548,945	-				+0.8
2,548,945	-				-0.0
2,548,945	-				+0.5
2,548,945	-				+0.8
2,548,945	-				-0.3
2,548,945	-				-0.6
2,548,945	-				-0.6
2,548,945	-				-1.1
2,548,945	-				-0.2
2,548,945	-				-0.5
2,548,945	-				+1.0
2,548,945	-				+0.1
2,548,945	-				+0.7
2,548,945	-				+1.0
2,548,945	-				+0.3
2,548,945	-				-0.1
2,548,945	-				-0.0
2,548,945	-				-0.2
2,548,945	-				+0.2
2,548,945	-				-0.3
2,548,945	-				+0.1
2,548,945	-				-0.5
2,548,945	-				-0.3
2,548,945	-				+0.0
2,548,945	-				-0.1
2,548,945	-				+1.0
2,548,945	-				-1.2
2,548,945	-				-1.1
2,548,945	-				+0.5
2,548,945	-				+0.5
2,548,945	-				-0.0
2,548,945	-				-0.2
2,548,945	-				+0.6
2,548,970	+				-0.2
2,548,970	+				-0.8
2,548,978	-				-0.5
2,548,978	-				-0.4
2,549,002	-				+0.2
2,549,014	+				+0.8
2,549,022	+				+0.0
2,549,026	+				+0.2
2,549,026	+				-0.7
2,549,026	+				-0.3
2,549,034	-				-2.8
2,549,034	-				-0.9
2,549,037	+				+0.1
2,549,042	+				-1.6
2,549,042	+				-1.3
2,549,047	+				+0.6
2,549,052	+		GFF2532	0.10	+1.2
2,549,052	+		GFF2532	0.10	+0.7
2,549,055	-		GFF2532	0.11	-1.3
2,549,060	-		GFF2532	0.11	-2.6
2,549,060	-		GFF2532	0.11	-0.1
2,549,060	-		GFF2532	0.11	+0.1
2,549,060	-		GFF2532	0.11	-0.3
2,549,067	+		GFF2532	0.12	+0.1
2,549,068	+		GFF2532	0.12	-0.2
2,549,068	+		GFF2532	0.12	-0.3
2,549,068	+		GFF2532	0.12	+0.4
2,549,068	+		GFF2532	0.12	-2.3
2,549,076	-		GFF2532	0.13	-1.3
2,549,076	-		GFF2532	0.13	+0.1
2,549,076	-		GFF2532	0.13	+0.5
2,549,076	-		GFF2532	0.13	+0.9
2,549,076	-		GFF2532	0.13	+0.7
2,549,076	-		GFF2532	0.13	+0.4
2,549,081	+		GFF2532	0.14	+0.1
2,549,081	-		GFF2532	0.14	-0.2
2,549,089	-		GFF2532	0.15	-2.3
2,549,093	-		GFF2532	0.15	-0.6
2,549,095	-		GFF2532	0.16	+0.3
2,549,098	-		GFF2532	0.16	-0.1
2,549,133	+		GFF2532	0.20	-0.6
2,549,135	-		GFF2532	0.20	-0.3
2,549,135	-		GFF2532	0.20	+0.4
2,549,135	-		GFF2532	0.20	-2.0
2,549,141	-		GFF2532	0.21	+0.8
2,549,141	-		GFF2532	0.21	+1.0
2,549,142	-		GFF2532	0.21	+1.2
2,549,162	+		GFF2532	0.24	+0.7
2,549,167	+		GFF2532	0.24	+0.4
2,549,170	-		GFF2532	0.25	+1.9
2,549,180	-		GFF2532	0.26	+0.4
2,549,180	-		GFF2532	0.26	+0.5
2,549,193	+		GFF2532	0.28	-0.3
2,549,198	+		GFF2532	0.28	-0.3
2,549,198	+		GFF2532	0.28	+0.5
2,549,213	+		GFF2532	0.30	-1.1
2,549,218	+		GFF2532	0.31	-0.1
2,549,218	+		GFF2532	0.31	-0.1
2,549,223	+		GFF2532	0.31	-1.5
2,549,231	-		GFF2532	0.32	-1.5
2,549,244	-		GFF2532	0.34	-0.6
2,549,286	+		GFF2532	0.39	-0.2
2,549,289	-		GFF2532	0.40	+0.4
2,549,291	+		GFF2532	0.40	+1.2
2,549,291	+		GFF2532	0.40	+1.0
2,549,296	+		GFF2532	0.40	-0.1
2,549,301	+		GFF2532	0.41	+0.3
2,549,314	-		GFF2532	0.43	+0.4
2,549,316	-		GFF2532	0.43	-1.0
2,549,370	-		GFF2532	0.50	+0.3
2,549,419	+		GFF2532	0.56	-0.7
2,549,441	+		GFF2532	0.58	+0.7
2,549,449	-		GFF2532	0.59	+0.7
2,549,451	+		GFF2532	0.60	-0.8
2,549,477	+		GFF2532	0.63	+0.9
2,549,485	-		GFF2532	0.64	+0.2
2,549,485	-		GFF2532	0.64	-1.2
2,549,496	+		GFF2532	0.65	-1.5
2,549,508	+		GFF2532	0.67	+0.4
2,549,508	+		GFF2532	0.67	+0.1
2,549,526	-		GFF2532	0.69	-0.1
2,549,537	+		GFF2532	0.70	+0.1
2,549,540	-		GFF2532	0.70	+0.6
2,549,545	-		GFF2532	0.71	+0.2
2,549,620	-		GFF2532	0.80	-1.2
2,549,634	+		GFF2532	0.82	+0.2
2,549,661	+		GFF2532	0.85	-1.6
2,549,669	-		GFF2532	0.86	+0.0
2,549,669	-		GFF2532	0.86	+0.9
2,549,687	+		GFF2532	0.89	-0.1
2,549,698	+				-0.5
2,549,700	-				-0.1
2,549,713	-				-1.6
2,549,713	-				+0.5
2,549,733	+				-1.3
2,549,768	-				+0.2
2,549,771	+				+1.3
2,549,771	+				+1.4
2,549,784	+				+0.4
2,549,791	+				+0.4
2,549,797	+				-0.2
2,549,799	+				+0.4
2,549,801	+				-2.8
2,549,801	+				-0.5
2,549,806	+				+0.1
2,549,827	+				-0.6
2,549,828	+				-1.2
2,549,828	+				-1.8
2,549,834	+		GFF2533	0.11	-0.1
2,549,835	-		GFF2533	0.11	-0.8
2,549,836	-		GFF2533	0.12	-0.8
2,549,850	-		GFF2533	0.17	+0.3
2,549,850	-		GFF2533	0.17	-0.5
2,549,901	-		GFF2533	0.37	-0.7
2,549,914	-		GFF2533	0.42	-1.8
2,549,914	-		GFF2533	0.42	+0.5
2,549,916	-		GFF2533	0.43	+0.8
2,549,934	-		GFF2533	0.50	+0.2
2,549,980	+		GFF2533	0.67	-3.0
2,549,987	+		GFF2533	0.70	+0.5
2,549,987	+		GFF2533	0.70	+0.2
2,549,987	+		GFF2533	0.70	+0.7
2,549,988	-		GFF2533	0.71	-0.2
2,549,993	+		GFF2533	0.72	+1.4
2,549,995	-		GFF2533	0.73	-1.5
2,549,995	-		GFF2533	0.73	+0.1
2,550,001	-		GFF2533	0.76	-0.9
2,550,005	+		GFF2533	0.77	-1.5
2,550,005	+		GFF2533	0.77	-1.8
2,550,005	+		GFF2533	0.77	-0.7
2,550,005	+		GFF2533	0.77	-0.2
2,550,005	+		GFF2533	0.77	-0.0
2,550,005	+		GFF2533	0.77	-0.4
2,550,005	+		GFF2533	0.77	-0.8
2,550,005	+		GFF2533	0.77	-2.0
2,550,005	+		GFF2533	0.77	-0.8
2,550,005	+		GFF2533	0.77	-0.4
2,550,005	+		GFF2533	0.77	-0.7
2,550,005	+		GFF2533	0.77	+1.4
2,550,005	+		GFF2533	0.77	+0.2
2,550,005	+		GFF2533	0.77	+1.2
2,550,005	+		GFF2533	0.77	+2.0
2,550,005	+		GFF2533	0.77	+1.3
2,550,005	+		GFF2533	0.77	+0.2
2,550,005	+		GFF2533	0.77	+1.0
2,550,005	+		GFF2533	0.77	+0.2
2,550,005	+		GFF2533	0.77	+0.0
2,550,005	+		GFF2533	0.77	+0.0
2,550,005	+		GFF2533	0.77	-0.9
2,550,005	+		GFF2533	0.77	-2.2
2,550,005	+		GFF2533	0.77	-0.6
2,550,005	+		GFF2533	0.77	+1.1
2,550,013	-		GFF2533	0.80	+0.4
2,550,013	-		GFF2533	0.80	+0.6
2,550,013	-		GFF2533	0.80	-0.2
2,550,013	-		GFF2533	0.80	+0.9
2,550,013	-		GFF2533	0.80	+0.2
2,550,013	-		GFF2533	0.80	-1.0
2,550,013	-		GFF2533	0.80	+0.4
2,550,013	-		GFF2533	0.80	+1.0
2,550,013	-		GFF2533	0.80	-0.1
2,550,013	-		GFF2533	0.80	+0.6
2,550,013	-		GFF2533	0.80	-1.0
2,550,013	-		GFF2533	0.80	-0.8
2,550,013	-		GFF2533	0.80	-1.5
2,550,013	-		GFF2533	0.80	-1.1
2,550,013	-		GFF2533	0.80	+0.2
2,550,013	-		GFF2533	0.80	+0.0
2,550,013	-		GFF2533	0.80	+0.0
2,550,013	-		GFF2533	0.80	-0.8
2,550,013	-		GFF2533	0.80	-0.1
2,550,013	-		GFF2533	0.80	-0.8
2,550,013	-		GFF2533	0.80	+1.0
2,550,013	-		GFF2533	0.80	-0.6
2,550,013	-		GFF2533	0.80	-3.0
2,550,013	-		GFF2533	0.80	-0.8
2,550,013	-		GFF2533	0.80	-0.0
2,550,013	-		GFF2533	0.80	-0.5
2,550,013	-		GFF2533	0.80	+0.8
2,550,013	-		GFF2533	0.80	-0.4
2,550,013	-		GFF2533	0.80	+0.4
2,550,013	-		GFF2533	0.80	-0.2
2,550,013	-		GFF2533	0.80	-0.2
2,550,013	-		GFF2533	0.80	+0.7
2,550,013	-		GFF2533	0.80	-0.2
2,550,018	+		GFF2533	0.82	-1.8
2,550,036	+		GFF2533	0.89	+1.0
2,550,055	-				+0.1
2,550,077	-				+0.1
2,550,101	+				-0.4
2,550,101	+				-1.4
2,550,139	+				-1.1
2,550,139	+				-0.3
2,550,139	+				+1.1
2,550,139	+				-0.2
2,550,139	+				-1.2
2,550,139	+				+0.9
2,550,147	-				-1.4
2,550,147	-				+0.5
2,550,147	-				-0.1
2,550,147	-				-0.5
2,550,147	-				-1.0
2,550,147	-				-0.4
2,550,147	-				+0.3
2,550,147	-				+0.1
2,550,147	-				-1.5
2,550,147	-				-0.2
2,550,147	-				-1.8
2,550,157	+				-1.3
2,550,167	+				-0.6
2,550,168	+				-1.8
2,550,170	+				+1.2
2,550,170	-				+0.4
2,550,170	-				-0.5
2,550,178	-				+0.3
2,550,193	+		GFF2534	0.10	+0.5
2,550,195	-		GFF2534	0.11	+1.0
2,550,201	-		GFF2534	0.12	+0.9
2,550,201	-		GFF2534	0.12	+0.8
2,550,216	-		GFF2534	0.13	-1.5
2,550,234	+		GFF2534	0.16	+0.2
2,550,234	+		GFF2534	0.16	-0.2
2,550,234	+		GFF2534	0.16	+0.1
2,550,234	+		GFF2534	0.16	+0.1
2,550,234	+		GFF2534	0.16	+0.2
2,550,234	+		GFF2534	0.16	-0.9
2,550,234	+		GFF2534	0.16	-0.0
2,550,234	+		GFF2534	0.16	+0.3
2,550,234	+		GFF2534	0.16	+0.2
2,550,234	+		GFF2534	0.16	-0.2
2,550,234	+		GFF2534	0.16	-0.8
2,550,234	+		GFF2534	0.16	-1.6
2,550,234	+		GFF2534	0.16	+0.5
2,550,234	+		GFF2534	0.16	-0.8
2,550,234	+		GFF2534	0.16	-0.5
2,550,234	+		GFF2534	0.16	-0.6
2,550,234	+		GFF2534	0.16	-0.8
2,550,234	+		GFF2534	0.16	-0.6
2,550,242	-		GFF2534	0.17	-1.5
2,550,242	-		GFF2534	0.17	-0.7
2,550,242	-		GFF2534	0.17	-0.5
2,550,242	-		GFF2534	0.17	+0.4
2,550,242	-		GFF2534	0.17	+1.3
2,550,242	-		GFF2534	0.17	-0.4
2,550,242	-		GFF2534	0.17	-0.1
2,550,242	-		GFF2534	0.17	-1.8
2,550,242	-		GFF2534	0.17	+0.3
2,550,255	+		GFF2534	0.19	+1.3
2,550,291	+		GFF2534	0.23	-1.8
2,550,293	+		GFF2534	0.24	-2.5
2,550,293	+		GFF2534	0.24	-0.9
2,550,293	+		GFF2534	0.24	+0.7
2,550,301	-		GFF2534	0.25	+0.8
2,550,301	-		GFF2534	0.25	-0.3
2,550,301	-		GFF2534	0.25	-1.3
2,550,315	-		GFF2534	0.27	-2.5
2,550,321	-		GFF2534	0.27	-0.7
2,550,326	+		GFF2534	0.28	-2.0
2,550,334	+		GFF2534	0.29	-1.8
2,550,345	-		GFF2534	0.31	-1.8
2,550,348	+		GFF2534	0.31	-0.7
2,550,361	-		GFF2534	0.33	-1.0
2,550,369	+		GFF2534	0.34	-1.9
2,550,369	+		GFF2534	0.34	-1.2
2,550,369	+		GFF2534	0.34	+0.9
2,550,377	-		GFF2534	0.35	-0.3
2,550,381	+		GFF2534	0.35	-0.7
2,550,382	-		GFF2534	0.35	-2.6
2,550,382	-		GFF2534	0.35	-0.1
2,550,416	-		GFF2534	0.40	+1.1
2,550,428	+		GFF2534	0.42	-0.6
2,550,435	-		GFF2534	0.42	-2.5
2,550,437	+		GFF2534	0.43	-0.6
2,550,437	+		GFF2534	0.43	-0.3
2,550,437	+		GFF2534	0.43	+0.1
2,550,437	+		GFF2534	0.43	+0.8
2,550,437	+		GFF2534	0.43	-0.3
2,550,445	-		GFF2534	0.44	-2.0
2,550,445	-		GFF2534	0.44	-0.2
2,550,445	-		GFF2534	0.44	-0.3
2,550,445	-		GFF2534	0.44	-2.1
2,550,489	-		GFF2534	0.50	+0.9
2,550,496	+		GFF2534	0.51	+0.2
2,550,501	-		GFF2534	0.51	-1.2
2,550,505	-		GFF2534	0.52	-1.9
2,550,506	-		GFF2534	0.52	-0.5
2,550,506	-		GFF2534	0.52	-1.6
2,550,519	+		GFF2534	0.54	-0.0
2,550,522	-		GFF2534	0.54	-0.0
2,550,527	-		GFF2534	0.55	-0.3
2,550,527	-		GFF2534	0.55	+0.1
2,550,541	+		GFF2534	0.56	-0.6
2,550,546	+		GFF2534	0.57	-0.1
2,550,549	-		GFF2534	0.58	-1.8
2,550,551	+		GFF2534	0.58	+0.1
2,550,554	-		GFF2534	0.58	+0.5
2,550,558	-		GFF2534	0.59	-1.6
2,550,576	-		GFF2534	0.61	-0.3
2,550,576	-		GFF2534	0.61	-0.9
2,550,581	+		GFF2534	0.62	+0.2
2,550,589	-		GFF2534	0.63	-2.0
2,550,589	-		GFF2534	0.63	-1.1
2,550,589	-		GFF2534	0.63	-1.5
2,550,604	+		GFF2534	0.65	+0.4
2,550,609	+		GFF2534	0.65	+0.4
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