Strain Fitness in Sphingobium sp. HT1-2 around GFF2480

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,502,187	-		GFF2478	0.50	-0.4
2,502,196	+		GFF2478	0.51	-1.1
2,502,196	+		GFF2478	0.51	-2.1
2,502,201	+		GFF2478	0.52	+0.1
2,502,204	-		GFF2478	0.52	-0.7
2,502,206	+		GFF2478	0.52	-0.3
2,502,209	-		GFF2478	0.53	-1.0
2,502,214	-		GFF2478	0.53	-1.3
2,502,224	+		GFF2478	0.54	-0.1
2,502,225	+		GFF2478	0.54	+1.1
2,502,232	-		GFF2478	0.55	+0.8
2,502,252	-		GFF2478	0.57	-1.6
2,502,258	-		GFF2478	0.58	-0.9
2,502,261	+		GFF2478	0.58	-0.3
2,502,261	+		GFF2478	0.58	-1.8
2,502,269	-		GFF2478	0.59	-0.1
2,502,305	+		GFF2478	0.63	-0.3
2,502,305	+		GFF2478	0.63	-0.4
2,502,313	-		GFF2478	0.64	-0.6
2,502,319	-		GFF2478	0.65	+0.3
2,502,323	-		GFF2478	0.65	-0.7
2,502,343	-		GFF2478	0.67	-0.8
2,502,375	+		GFF2478	0.71	-2.1
2,502,375	+		GFF2478	0.71	-0.7
2,502,375	+		GFF2478	0.71	-2.0
2,502,375	+		GFF2478	0.71	+0.2
2,502,375	+		GFF2478	0.71	-0.6
2,502,376	+		GFF2478	0.71	+1.0
2,502,383	-		GFF2478	0.72	+1.0
2,502,383	-		GFF2478	0.72	-0.9
2,502,383	-		GFF2478	0.72	-1.1
2,502,383	-		GFF2478	0.72	-1.0
2,502,383	-		GFF2478	0.72	-0.4
2,502,384	-		GFF2478	0.72	-1.4
2,502,385	-		GFF2478	0.72	+0.1
2,502,390	-		GFF2478	0.73	-0.2
2,502,390	-		GFF2478	0.73	-1.0
2,502,390	-		GFF2478	0.73	-0.6
2,502,410	-		GFF2478	0.75	-0.4
2,502,412	+		GFF2478	0.75	-1.7
2,502,415	-		GFF2478	0.75	+0.7
2,502,420	-		GFF2478	0.76	+0.6
2,502,425	+		GFF2478	0.77	-0.7
2,502,425	+		GFF2478	0.77	-0.3
2,502,425	+		GFF2478	0.77	+0.4
2,502,433	-		GFF2478	0.77	-0.3
2,502,470	-		GFF2478	0.82	-0.2
2,502,474	+		GFF2478	0.82	-1.2
2,502,475	+		GFF2478	0.82	-2.1
2,502,482	-		GFF2478	0.83	+0.9
2,502,482	-		GFF2478	0.83	-0.2
2,502,488	+		GFF2478	0.83	-0.9
2,502,495	+		GFF2478	0.84	-1.9
2,502,497	+		GFF2478	0.84	+0.6
2,502,500	+		GFF2478	0.85	-1.0
2,502,503	-		GFF2478	0.85	+0.7
2,502,503	-		GFF2478	0.85	-0.1
2,502,506	+		GFF2478	0.85	-0.6
2,502,514	+		GFF2478	0.86	+1.3
2,502,564	-				-0.1
2,502,575	-				-0.1
2,502,586	+				+1.0
2,502,618	+				+1.1
2,502,618	+				+0.0
2,502,618	+				-1.4
2,502,618	+				-0.7
2,502,619	+				-0.1
2,502,623	+				-0.3
2,502,623	+				+0.7
2,502,626	-				+0.2
2,502,626	-				-0.7
2,502,626	-				+0.2
2,502,626	-				-1.6
2,502,637	-				+0.6
2,502,651	-				+0.7
2,502,655	+				-0.8
2,502,657	-				+1.0
2,502,660	+				-1.7
2,502,660	+				+0.7
2,502,661	-				+1.3
2,502,663	-		GFF2479	0.10	-1.0
2,502,663	-		GFF2479	0.10	-0.1
2,502,668	-		GFF2479	0.12	+0.5
2,502,668	-		GFF2479	0.12	-0.2
2,502,673	+		GFF2479	0.14	-1.7
2,502,681	-		GFF2479	0.17	-0.2
2,502,701	+		GFF2479	0.24	-0.9
2,502,701	+		GFF2479	0.24	-1.6
2,502,701	+		GFF2479	0.24	+0.1
2,502,701	+		GFF2479	0.24	-1.2
2,502,701	+		GFF2479	0.24	-1.6
2,502,701	+		GFF2479	0.24	-0.2
2,502,701	+		GFF2479	0.24	-0.5
2,502,701	+		GFF2479	0.24	-0.8
2,502,701	+		GFF2479	0.24	-1.2
2,502,701	+		GFF2479	0.24	+1.7
2,502,701	+		GFF2479	0.24	+0.2
2,502,701	+		GFF2479	0.24	-0.7
2,502,701	+		GFF2479	0.24	+1.2
2,502,701	+		GFF2479	0.24	+1.1
2,502,701	+		GFF2479	0.24	-2.6
2,502,701	+		GFF2479	0.24	+0.3
2,502,709	+		GFF2479	0.26	+0.7
2,502,709	-		GFF2479	0.26	-0.4
2,502,709	-		GFF2479	0.26	-1.6
2,502,709	-		GFF2479	0.26	+0.8
2,502,709	-		GFF2479	0.26	+0.5
2,502,709	-		GFF2479	0.26	-0.3
2,502,709	-		GFF2479	0.26	-0.3
2,502,709	-		GFF2479	0.26	-0.2
2,502,709	-		GFF2479	0.26	+0.8
2,502,709	-		GFF2479	0.26	-1.4
2,502,709	-		GFF2479	0.26	+0.0
2,502,709	-		GFF2479	0.26	+0.3
2,502,709	-		GFF2479	0.26	+0.2
2,502,709	-		GFF2479	0.26	-0.3
2,502,709	-		GFF2479	0.26	+0.2
2,502,709	-		GFF2479	0.26	+0.3
2,502,709	-		GFF2479	0.26	-0.0
2,502,709	-		GFF2479	0.26	+1.0
2,502,717	-		GFF2479	0.29	-0.7
2,502,741	+		GFF2479	0.38	+0.0
2,502,742	-		GFF2479	0.38	-0.5
2,502,756	-		GFF2479	0.43	-0.6
2,502,756	-		GFF2479	0.43	-0.4
2,502,769	-		GFF2479	0.47	+1.0
2,502,772	+		GFF2479	0.48	+1.3
2,502,772	+		GFF2479	0.48	-0.5
2,502,777	+		GFF2479	0.50	-0.2
2,502,780	-		GFF2479	0.51	+1.3
2,502,780	-		GFF2479	0.51	+0.3
2,502,785	-		GFF2479	0.53	-2.3
2,502,794	+		GFF2479	0.56	-1.7
2,502,794	+		GFF2479	0.56	-0.0
2,502,794	+		GFF2479	0.56	-0.2
2,502,794	+		GFF2479	0.56	+0.7
2,502,794	+		GFF2479	0.56	+1.0
2,502,794	+		GFF2479	0.56	+0.7
2,502,794	+		GFF2479	0.56	-0.1
2,502,794	+		GFF2479	0.56	+0.7
2,502,794	+		GFF2479	0.56	+0.5
2,502,794	+		GFF2479	0.56	-0.6
2,502,794	+		GFF2479	0.56	-0.4
2,502,794	+		GFF2479	0.56	-0.1
2,502,802	-		GFF2479	0.59	+0.0
2,502,802	-		GFF2479	0.59	-0.3
2,502,802	-		GFF2479	0.59	-1.7
2,502,802	-		GFF2479	0.59	-0.3
2,502,802	-		GFF2479	0.59	-1.3
2,502,802	-		GFF2479	0.59	-0.9
2,502,802	-		GFF2479	0.59	+0.9
2,502,802	-		GFF2479	0.59	-0.7
2,502,802	-		GFF2479	0.59	-0.8
2,502,802	-		GFF2479	0.59	-1.1
2,502,802	-		GFF2479	0.59	-0.1
2,502,802	-		GFF2479	0.59	-0.4
2,502,802	-		GFF2479	0.59	-0.2
2,502,822	+		GFF2479	0.66	+1.3
2,502,840	-		GFF2479	0.72	+0.1
2,502,840	-		GFF2479	0.72	-1.6
2,502,864	-		GFF2479	0.80	-2.4
2,502,892	+				-0.7
2,502,892	+				+0.4
2,502,895	-				+0.0
2,502,897	+				+0.2
2,502,905	-				-1.4
2,502,921	+				-2.1
2,502,924	-				-0.8
2,502,929	+				+1.0
2,502,929	+				-0.1
2,502,929	+				-1.8
2,502,937	-				-1.0
2,502,937	-				-0.3
2,502,937	-				-0.5
2,502,938	+				-0.1
2,502,938	+				+1.1
2,502,938	+				+0.1
2,502,938	+				-0.7
2,502,940	+				+1.3
2,502,946	-				+0.0
2,502,946	-				-0.3
2,502,967	-				+0.1
2,502,991	+				+1.4
2,502,991	+				-3.4
2,503,015	+				-1.2
2,503,038	+				+0.3
2,503,063	-				+0.6
2,503,063	-				-0.3
2,503,071	+				+0.6
2,503,085	+				+0.6
2,503,085	+				+0.3
2,503,085	+				-1.5
2,503,090	+				-1.2
2,503,090	+				+0.7
2,503,090	+				+1.1
2,503,096	+				-1.7
2,503,097	+				-1.6
2,503,097	-				+1.0
2,503,100	+				-0.4
2,503,116	-				-0.7
2,503,125	-				-2.7
2,503,135	+				+0.6
2,503,137	-				-0.4
2,503,145	-				-1.4
2,503,156	+				+0.7
2,503,171	+				-2.2
2,503,171	+				-1.2
2,503,171	+				-0.5
2,503,171	+				-1.6
2,503,171	+				+0.0
2,503,171	+				+0.3
2,503,178	+				-0.3
2,503,179	-				+0.7
2,503,179	-				+1.5
2,503,179	-				-1.9
2,503,180	-				+0.4
2,503,185	-				-0.4
2,503,217	+				-1.6
2,503,218	-				-0.2
2,503,272	+		GFF2480	0.18	-0.2
2,503,272	-		GFF2480	0.18	-0.1
2,503,280	+		GFF2480	0.20	-0.2
2,503,280	+		GFF2480	0.20	-0.4
2,503,285	+		GFF2480	0.21	+1.4
2,503,288	-		GFF2480	0.22	-0.4
2,503,289	+		GFF2480	0.22	-0.7
2,503,289	+		GFF2480	0.22	-2.7
2,503,293	-		GFF2480	0.23	+1.3
2,503,299	+		GFF2480	0.24	+0.5
2,503,299	+		GFF2480	0.24	-0.1
2,503,299	+		GFF2480	0.24	-0.0
2,503,299	+		GFF2480	0.24	+0.4
2,503,307	-		GFF2480	0.26	-1.9
2,503,331	+		GFF2480	0.30	-1.4
2,503,331	+		GFF2480	0.30	-0.3
2,503,331	+		GFF2480	0.30	-0.9
2,503,331	+		GFF2480	0.30	-1.3
2,503,339	-		GFF2480	0.32	-2.1
2,503,339	-		GFF2480	0.32	-2.1
2,503,339	-		GFF2480	0.32	-0.3
2,503,339	-		GFF2480	0.32	-0.6
2,503,353	+		GFF2480	0.35	+0.1
2,503,359	+		GFF2480	0.36	-0.6
2,503,359	+		GFF2480	0.36	+0.1
2,503,361	-		GFF2480	0.36	-0.6
2,503,367	-		GFF2480	0.38	-1.6
2,503,367	-		GFF2480	0.38	-1.5
2,503,372	-		GFF2480	0.39	+0.8
2,503,395	-		GFF2480	0.43	-0.0
2,503,403	-		GFF2480	0.45	-0.4
2,503,410	+		GFF2480	0.46	-0.5
2,503,412	+		GFF2480	0.47	+0.5
2,503,418	-		GFF2480	0.48	+0.5
2,503,450	+		GFF2480	0.54	-1.0
2,503,471	+		GFF2480	0.58	-0.3
2,503,477	+		GFF2480	0.60	+2.0
2,503,480	-		GFF2480	0.60	+0.5
2,503,482	+		GFF2480	0.61	-1.4
2,503,493	+		GFF2480	0.63	-0.4
2,503,493	+		GFF2480	0.63	-2.0
2,503,496	-		GFF2480	0.63	+0.3
2,503,501	-		GFF2480	0.64	-1.3
2,503,503	+		GFF2480	0.65	-0.8
2,503,503	+		GFF2480	0.65	-0.3
2,503,508	+		GFF2480	0.66	+0.6
2,503,508	+		GFF2480	0.66	+1.6
2,503,509	+		GFF2480	0.66	-0.5
2,503,511	-		GFF2480	0.66	-1.8
2,503,516	-		GFF2480	0.67	+0.0
2,503,516	-		GFF2480	0.67	-1.7
2,503,516	-		GFF2480	0.67	-0.6
2,503,516	-		GFF2480	0.67	+0.4
2,503,516	-		GFF2480	0.67	-1.9
2,503,516	-		GFF2480	0.67	+1.0
2,503,520	+		GFF2480	0.68	-0.7
2,503,520	+		GFF2480	0.68	-1.7
2,503,520	+		GFF2480	0.68	+1.0
2,503,522	-		GFF2480	0.69	+0.0
2,503,522	-		GFF2480	0.69	-0.9
2,503,535	+		GFF2480	0.71	+0.7
2,503,551	+		GFF2480	0.74	-1.0
2,503,551	+		GFF2480	0.74	-1.1
2,503,551	+		GFF2480	0.74	-1.2
2,503,551	+		GFF2480	0.74	-2.1
2,503,552	-		GFF2480	0.75	-0.8
2,503,559	-		GFF2480	0.76	-0.5
2,503,559	-		GFF2480	0.76	-0.8
2,503,559	-		GFF2480	0.76	+0.6
2,503,591	+		GFF2480	0.83	+1.3
2,503,625	+		GFF2480	0.89	-0.2
2,503,627	-		GFF2480	0.90	+0.1
2,503,633	-				-0.3
2,503,640	+				-0.4
2,503,640	+				-1.4
2,503,640	+				-1.7
2,503,640	+				+0.6
2,503,640	+				-0.4
2,503,641	+				-0.2
2,503,648	-				-2.1
2,503,648	-				+0.5
2,503,648	-				+0.2
2,503,648	-				+0.4
2,503,648	-				-0.7
2,503,648	-				-0.4
2,503,779	+				+0.9
2,503,779	+				-0.1
2,503,787	-				-0.6
2,503,787	-				+0.8
2,503,789	+				-0.9
2,503,819	+				-1.0
2,503,832	-				-0.7
2,503,851	-				+0.4
2,503,868	-				+1.2
2,503,908	-				+0.7
2,503,925	-				+0.4
2,503,934	-				-1.0
2,503,968	-				-0.2
2,503,997	+				+0.0
2,504,033	-				+0.3
2,504,035	+				-0.9
2,504,038	-				-0.3
2,504,053	+				-0.1
2,504,059	+				-1.3
2,504,060	-				-0.5
2,504,067	-				-0.3
2,504,067	-				+1.5
2,504,077	+				+0.3
2,504,077	+				-0.6
2,504,085	-				+0.9
2,504,085	-				-1.8
2,504,087	-				+0.5
2,504,107	-				+0.4
2,504,108	+				-0.2
2,504,121	-				-0.5
2,504,153	-				-0.9
2,504,154	-				+0.5
2,504,155	+				+0.9
2,504,168	+				+0.9
2,504,228	-				+1.1
2,504,229	+				-0.2
2,504,229	+				-0.2
2,504,237	-				+1.1
2,504,237	-				-3.0
2,504,249	+				+0.4
2,504,250	+				-0.8
2,504,250	+				-0.1
2,504,258	-				-0.4
2,504,258	-				-2.7
2,504,260	+				-0.6
2,504,260	+				+0.3
2,504,260	+				-1.6
2,504,260	+				-2.6
2,504,260	+				-0.0
2,504,260	+				-1.2
2,504,260	+				-1.3
2,504,260	+				+0.1
2,504,260	+				-0.2
2,504,260	+				-0.1
2,504,260	+				-0.1
2,504,260	+				+1.8
2,504,260	+				-1.2
2,504,260	+				+0.4
2,504,260	+				-0.7
2,504,260	+				+0.3
2,504,260	+				-1.4
2,504,260	+				+1.0
2,504,268	-				-0.9
2,504,268	-				+1.3
2,504,268	-				-0.8
2,504,268	-				-1.7
2,504,268	-				-1.2
2,504,268	-				-0.0
2,504,268	-				+0.7
2,504,268	-				-1.0
2,504,268	-				+0.4
2,504,268	-				-0.1
2,504,268	-				+0.2
2,504,268	-				-1.8
2,504,268	-				-0.6
2,504,268	-				-0.2
2,504,272	+				-0.3
2,504,280	-				+0.1
2,504,280	-				-1.3
2,504,299	+				+0.6
2,504,299	+				-1.8
2,504,299	+				+0.4
2,504,299	+				+1.3
2,504,301	+				-0.2
2,504,301	+				-1.7
2,504,306	+				-2.6
2,504,307	-				+0.2
2,504,307	-				-2.1
2,504,307	-				-0.1
2,504,309	-				-2.8
2,504,312	-				+0.3
2,504,314	-				-2.5
2,504,318	+				-2.1
2,504,336	-				-3.1
2,504,347	+				-4.1
2,504,437	+		GFF2481	0.15	-1.7
2,504,463	-		GFF2481	0.18	-2.3
2,504,463	-		GFF2481	0.18	-1.4
2,504,483	+		GFF2481	0.20	-1.8
2,504,511	+		GFF2481	0.23	-3.0
2,504,511	+		GFF2481	0.23	-2.3
2,504,511	+		GFF2481	0.23	-2.5
2,504,511	+		GFF2481	0.23	-1.7
2,504,511	+		GFF2481	0.23	-0.7
2,504,511	+		GFF2481	0.23	-3.7
2,504,511	+		GFF2481	0.23	-1.4
2,504,519	-		GFF2481	0.24	-3.0
2,504,519	-		GFF2481	0.24	-2.7
2,504,519	-		GFF2481	0.24	-1.7
2,504,519	-		GFF2481	0.24	-1.7
2,504,519	-		GFF2481	0.24	-3.8
2,504,526	+		GFF2481	0.25	-2.7
2,504,551	+		GFF2481	0.28	-1.7
2,504,566	-		GFF2481	0.30	-2.7
2,504,566	-		GFF2481	0.30	-2.6
2,504,567	-		GFF2481	0.30	-1.6
2,504,590	+		GFF2481	0.32	-2.6
2,504,592	-		GFF2481	0.32	-1.9
2,504,647	-		GFF2481	0.39	-2.5
2,504,675	+		GFF2481	0.42	-2.1