Strain Fitness in Sphingobium sp. HT1-2 around GFF2475

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,498,311	+				-2.3
2,498,336	+				-0.0
2,498,336	+				+0.4
2,498,336	+				-1.0
2,498,336	+				-0.6
2,498,336	+				-1.4
2,498,336	+				-0.9
2,498,336	+				-0.1
2,498,336	+				-0.7
2,498,344	-				+0.2
2,498,344	-				+0.0
2,498,344	-				-0.2
2,498,344	-				-1.3
2,498,372	-				-0.2
2,498,380	+				-0.9
2,498,384	+				-0.2
2,498,399	+				-0.4
2,498,399	+				-0.7
2,498,399	+				-0.3
2,498,407	-				-2.1
2,498,411	-				+1.0
2,498,417	-				-0.2
2,498,417	-				-0.2
2,498,418	+				-2.3
2,498,440	+				+0.7
2,498,441	+				-0.2
2,498,445	+				+0.1
2,498,445	+				-1.3
2,498,445	+				-0.6
2,498,445	+				+0.2
2,498,445	+				-2.0
2,498,445	+				-0.3
2,498,445	+				-0.3
2,498,445	+				-0.7
2,498,445	+				+1.0
2,498,445	+				+0.9
2,498,445	+				-0.2
2,498,445	+				+0.3
2,498,445	+				-1.0
2,498,445	+				-1.2
2,498,445	+				-0.4
2,498,445	+				-1.9
2,498,445	+				-0.2
2,498,445	+				-0.3
2,498,445	+				-0.6
2,498,445	+				+0.7
2,498,445	+				-1.6
2,498,445	+				+0.7
2,498,451	+				+0.0
2,498,451	+				-1.4
2,498,451	+				-0.7
2,498,453	-				-0.0
2,498,453	-				-3.2
2,498,453	-				-0.2
2,498,453	-				-0.8
2,498,453	-				+0.4
2,498,453	-				-1.0
2,498,453	-				+0.3
2,498,453	-				-0.4
2,498,453	-				-1.2
2,498,453	-				+0.5
2,498,453	-				-1.1
2,498,453	-				-2.0
2,498,453	-				-0.6
2,498,453	-				+1.3
2,498,453	-				+0.0
2,498,453	-				-0.7
2,498,453	-				-0.3
2,498,459	-				-0.6
2,498,644	-				-1.4
2,498,726	-				-0.2
2,498,750	+		GFF2474	0.14	+1.5
2,498,752	+		GFF2474	0.14	+1.4
2,498,758	+		GFF2474	0.15	-1.0
2,498,768	+		GFF2474	0.17	+0.6
2,498,770	-		GFF2474	0.17	-2.4
2,498,799	+		GFF2474	0.22	-0.3
2,498,812	+		GFF2474	0.24	+0.3
2,498,817	+		GFF2474	0.25	-1.3
2,498,817	+		GFF2474	0.25	-0.1
2,498,820	-		GFF2474	0.25	-2.1
2,498,820	-		GFF2474	0.25	+0.0
2,498,820	-		GFF2474	0.25	+0.0
2,498,820	-		GFF2474	0.25	-1.3
2,498,822	+		GFF2474	0.25	-0.5
2,498,822	+		GFF2474	0.25	-2.3
2,498,841	+		GFF2474	0.28	-2.3
2,498,868	+		GFF2474	0.33	-0.1
2,498,871	-		GFF2474	0.33	-0.6
2,498,876	-		GFF2474	0.34	+0.3
2,498,928	-		GFF2474	0.43	+0.9
2,498,933	-		GFF2474	0.43	+1.0
2,498,990	+		GFF2474	0.53	-0.4
2,498,990	+		GFF2474	0.53	+0.3
2,498,990	+		GFF2474	0.53	+0.7
2,498,998	-		GFF2474	0.54	+0.5
2,498,998	-		GFF2474	0.54	+0.0
2,498,998	-		GFF2474	0.54	-0.0
2,498,998	-		GFF2474	0.54	-0.4
2,498,998	-		GFF2474	0.54	+0.3
2,498,998	-		GFF2474	0.54	-0.2
2,499,007	+		GFF2474	0.56	+1.4
2,499,007	+		GFF2474	0.56	+0.4
2,499,007	+		GFF2474	0.56	+0.0
2,499,007	+		GFF2474	0.56	+0.3
2,499,007	+		GFF2474	0.56	-0.3
2,499,007	+		GFF2474	0.56	-0.5
2,499,007	+		GFF2474	0.56	+0.4
2,499,015	-		GFF2474	0.57	-0.6
2,499,015	-		GFF2474	0.57	+0.2
2,499,015	-		GFF2474	0.57	-1.6
2,499,017	+		GFF2474	0.57	-2.0
2,499,025	-		GFF2474	0.58	-2.4
2,499,027	+		GFF2474	0.59	-0.3
2,499,032	+		GFF2474	0.60	+0.4
2,499,045	-		GFF2474	0.62	-0.4
2,499,057	-		GFF2474	0.64	+0.7
2,499,065	+		GFF2474	0.65	-0.2
2,499,075	+		GFF2474	0.67	-0.3
2,499,078	-		GFF2474	0.67	-0.6
2,499,080	+		GFF2474	0.67	-1.3
2,499,102	-		GFF2474	0.71	-1.3
2,499,111	+		GFF2474	0.73	-1.2
2,499,116	+		GFF2474	0.73	-1.1
2,499,118	+		GFF2474	0.74	-0.6
2,499,119	-		GFF2474	0.74	-0.6
2,499,142	+		GFF2474	0.78	-0.5
2,499,169	+		GFF2474	0.82	-1.5
2,499,169	+		GFF2474	0.82	+0.6
2,499,177	-		GFF2474	0.83	-1.3
2,499,192	-		GFF2474	0.86	-1.0
2,499,192	-		GFF2474	0.86	-0.5
2,499,202	-		GFF2474	0.87	-0.9
2,499,207	-		GFF2474	0.88	+0.1
2,499,207	-		GFF2474	0.88	-0.2
2,499,218	-				+0.0
2,499,221	+				+0.4
2,499,238	+				-1.8
2,499,246	-				-2.7
2,499,246	-				-1.6
2,499,246	-				-1.1
2,499,273	+				-0.7
2,499,281	-				+0.1
2,499,281	-				-0.6
2,499,317	-				+0.7
2,499,325	-				+0.8
2,499,325	-				-0.4
2,499,361	+				+0.3
2,499,361	+				+0.4
2,499,361	+				-0.5
2,499,369	-				-0.8
2,499,373	+				+0.4
2,499,373	+				-1.1
2,499,381	-				-0.4
2,499,381	-				-1.1
2,499,381	-				-1.3
2,499,427	+		GFF2475	0.15	+1.5
2,499,435	-		GFF2475	0.15	+0.3
2,499,528	-		GFF2475	0.26	+0.5
2,499,538	+		GFF2475	0.27	-0.9
2,499,546	-		GFF2475	0.28	-1.6
2,499,559	+		GFF2475	0.29	-1.5
2,499,561	-		GFF2475	0.29	-0.7
2,499,589	+		GFF2475	0.32	-0.7
2,499,589	+		GFF2475	0.32	-2.7
2,499,589	+		GFF2475	0.32	+0.3
2,499,589	+		GFF2475	0.32	-0.4
2,499,589	+		GFF2475	0.32	-0.4
2,499,589	+		GFF2475	0.32	-0.3
2,499,597	-		GFF2475	0.33	-0.5
2,499,597	-		GFF2475	0.33	-0.1
2,499,597	-		GFF2475	0.33	-1.3
2,499,597	-		GFF2475	0.33	+0.1
2,499,620	-		GFF2475	0.36	-0.5
2,499,643	-		GFF2475	0.38	-0.4
2,499,673	+		GFF2475	0.42	-1.2
2,499,694	+		GFF2475	0.44	-0.6
2,499,707	-		GFF2475	0.45	-1.6
2,499,715	-		GFF2475	0.46	-0.9
2,499,717	+		GFF2475	0.46	-1.7
2,499,717	+		GFF2475	0.46	-0.3
2,499,785	-		GFF2475	0.54	-1.7
2,499,804	-		GFF2475	0.56	+0.7
2,499,823	+		GFF2475	0.58	-0.5
2,499,824	-		GFF2475	0.58	-0.4
2,499,824	-		GFF2475	0.58	-0.2
2,499,824	-		GFF2475	0.58	+0.9
2,499,830	-		GFF2475	0.59	-0.4
2,499,840	-		GFF2475	0.60	+0.1
2,499,898	+		GFF2475	0.66	+0.7
2,499,909	+		GFF2475	0.67	-1.8
2,499,917	-		GFF2475	0.68	-1.4
2,499,917	-		GFF2475	0.68	-0.3
2,499,917	-		GFF2475	0.68	+0.1
2,499,917	-		GFF2475	0.68	+0.5
2,499,917	-		GFF2475	0.68	-0.4
2,499,931	+		GFF2475	0.70	+0.4
2,499,939	-		GFF2475	0.71	-2.1
2,499,943	+		GFF2475	0.71	-0.4
2,499,943	-		GFF2475	0.71	-1.8
2,499,975	-		GFF2475	0.75	-0.0
2,500,003	+		GFF2475	0.78	+0.8
2,500,003	+		GFF2475	0.78	-1.3
2,500,011	-		GFF2475	0.79	-1.1
2,500,011	-		GFF2475	0.79	-1.2
2,500,017	-		GFF2475	0.79	-0.0
2,500,020	+		GFF2475	0.80	-1.2
2,500,031	+		GFF2475	0.81	-0.8
2,500,045	+		GFF2475	0.82	-0.2
2,500,045	+		GFF2475	0.82	+0.0
2,500,045	+		GFF2475	0.82	+0.2
2,500,045	+		GFF2475	0.82	-1.2
2,500,053	-		GFF2475	0.83	-1.1
2,500,053	-		GFF2475	0.83	+0.8
2,500,053	-		GFF2475	0.83	-1.3
2,500,054	+		GFF2475	0.83	-1.8
2,500,066	+		GFF2475	0.85	-1.0
2,500,092	+		GFF2475	0.88	+0.7
2,500,094	+		GFF2475	0.88	+0.3
2,500,099	+		GFF2475	0.88	-1.0
2,500,107	-		GFF2475	0.89	-0.4
2,500,107	-		GFF2475	0.89	-0.8
2,500,116	+				-0.4
2,500,124	-				-0.2
2,500,124	-				-0.5
2,500,124	-				-2.4
2,500,135	+				-1.0
2,500,143	-				-0.0
2,500,145	-				-0.1
2,500,148	-				+0.0
2,500,188	-				-0.2
2,500,188	-				-0.2
2,500,198	-				+0.5
2,500,198	-				+0.4
2,500,198	-				+0.9
2,500,198	-				+0.5
2,500,198	-				-0.4
2,500,198	-				+0.2
2,500,198	-				-1.3
2,500,198	-				-1.7
2,500,198	-				+0.9
2,500,198	-				-0.1
2,500,198	-				-0.6
2,500,214	-				-1.1
2,500,238	+				+1.1
2,500,239	-				-1.8
2,500,246	-				-0.9
2,500,246	-				-0.7
2,500,254	+				-0.5
2,500,258	-				-0.5
2,500,262	+				-0.6
2,500,268	+				+0.1
2,500,268	+				-0.1
2,500,268	+				+0.6
2,500,276	-				-0.6
2,500,276	-				+0.8
2,500,276	-				+0.9
2,500,276	-				+0.6
2,500,276	-				+0.7
2,500,277	+				-2.4
2,500,277	+				-0.9
2,500,297	+				-0.3
2,500,297	+				+0.3
2,500,305	-				-1.7
2,500,305	-				-0.6
2,500,305	-				-1.0
2,500,367	+		GFF2476	0.11	-0.9
2,500,382	+		GFF2476	0.15	-0.7
2,500,397	+		GFF2476	0.18	+0.3
2,500,404	+		GFF2476	0.20	-0.6
2,500,404	+		GFF2476	0.20	-1.0
2,500,407	-		GFF2476	0.21	-1.2
2,500,409	+		GFF2476	0.21	-2.7
2,500,412	-		GFF2476	0.22	+0.2
2,500,417	-		GFF2476	0.23	+0.4
2,500,426	+		GFF2476	0.25	-1.4
2,500,428	+		GFF2476	0.25	+0.5
2,500,428	+		GFF2476	0.25	-0.8
2,500,428	+		GFF2476	0.25	-1.7
2,500,436	-		GFF2476	0.27	+0.6
2,500,451	+		GFF2476	0.31	-3.3
2,500,458	+		GFF2476	0.32	+0.3
2,500,467	-		GFF2476	0.34	-1.4
2,500,467	-		GFF2476	0.34	-2.1
2,500,525	-		GFF2476	0.47	-2.1
2,500,535	+		GFF2476	0.50	-2.1
2,500,543	-		GFF2476	0.52	-0.1
2,500,626	+		GFF2476	0.71	-0.4
2,500,629	-		GFF2476	0.71	+0.0
2,500,634	-		GFF2476	0.72	-0.4
2,500,634	-		GFF2476	0.72	-1.7
2,500,639	-		GFF2476	0.74	-0.4
2,500,680	-		GFF2476	0.83	+1.2
2,500,683	+		GFF2476	0.84	-0.7
2,500,702	+		GFF2476	0.88	-1.1
2,500,710	-		GFF2476	0.90	-1.7
2,500,710	-		GFF2476	0.90	+0.4
2,500,710	-		GFF2476	0.90	-0.4
2,500,732	+				+0.0
2,500,747	-				-1.0
2,500,747	-				-1.3
2,500,754	+				-1.3
2,500,757	-				+0.4
2,500,757	-				-0.4
2,500,762	-				-1.2
2,500,769	+				-0.2
2,500,788	-				+1.0
2,500,788	-				+1.1
2,500,788	-				-0.6
2,500,788	-				-1.4
2,500,788	-				+0.4
2,500,788	-				+0.6
2,500,791	+				-0.2
2,500,791	+				-1.0
2,500,791	+				+0.5
2,500,794	-				+1.0
2,500,799	-				+0.3
2,500,799	-				-0.5
2,500,799	-				-0.6
2,500,799	-				-1.2
2,500,799	-				-0.9
2,500,799	-				-1.6
2,500,838	-		GFF2477	0.12	-0.4
2,500,861	+		GFF2477	0.15	+0.3
2,500,861	+		GFF2477	0.15	-0.4
2,500,867	+		GFF2477	0.16	+0.7
2,500,869	-		GFF2477	0.16	-1.6
2,500,869	-		GFF2477	0.16	-1.4
2,500,872	+		GFF2477	0.17	-0.7
2,500,872	+		GFF2477	0.17	-1.4
2,500,903	+		GFF2477	0.21	+0.7
2,500,925	+		GFF2477	0.24	-0.8
2,500,931	+		GFF2477	0.25	-0.7
2,500,939	+		GFF2477	0.26	-0.3
2,500,941	-		GFF2477	0.26	-0.6
2,500,974	+		GFF2477	0.31	-0.1
2,500,974	+		GFF2477	0.31	-0.1
2,500,974	+		GFF2477	0.31	-0.3
2,500,974	+		GFF2477	0.31	-1.4
2,500,980	-		GFF2477	0.31	-1.7
2,500,982	-		GFF2477	0.32	-1.4
2,501,007	+		GFF2477	0.35	-0.4
2,501,012	+		GFF2477	0.36	-1.3
2,501,020	-		GFF2477	0.37	+0.1
2,501,024	+		GFF2477	0.37	+0.7
2,501,032	-		GFF2477	0.39	-0.7
2,501,034	+		GFF2477	0.39	-0.5
2,501,034	+		GFF2477	0.39	-0.9
2,501,042	-		GFF2477	0.40	-1.2
2,501,047	-		GFF2477	0.41	-0.2
2,501,047	-		GFF2477	0.41	+1.1
2,501,056	+		GFF2477	0.42	+0.1
2,501,064	-		GFF2477	0.43	-1.7
2,501,064	-		GFF2477	0.43	-0.1
2,501,064	-		GFF2477	0.43	+0.2
2,501,064	-		GFF2477	0.43	+0.5
2,501,068	+		GFF2477	0.43	-0.2
2,501,073	+		GFF2477	0.44	+0.2
2,501,078	+		GFF2477	0.45	-0.6
2,501,081	+		GFF2477	0.45	-1.7
2,501,081	-		GFF2477	0.45	+0.3
2,501,090	-		GFF2477	0.47	-0.6
2,501,109	+		GFF2477	0.49	+0.3
2,501,118	+		GFF2477	0.50	+0.3
2,501,118	+		GFF2477	0.50	-1.0
2,501,118	+		GFF2477	0.50	-0.7
2,501,118	+		GFF2477	0.50	+0.0
2,501,148	-		GFF2477	0.54	-1.0
2,501,157	+		GFF2477	0.56	-1.5
2,501,157	+		GFF2477	0.56	+0.4
2,501,157	+		GFF2477	0.56	+0.0
2,501,157	+		GFF2477	0.56	+0.4
2,501,160	-		GFF2477	0.56	-0.9
2,501,165	-		GFF2477	0.57	+0.4
2,501,165	-		GFF2477	0.57	-1.6
2,501,166	+		GFF2477	0.57	-1.8
2,501,171	-		GFF2477	0.58	+0.5
2,501,174	-		GFF2477	0.58	-2.1
2,501,184	+		GFF2477	0.59	+0.4
2,501,189	+		GFF2477	0.60	+0.3
2,501,189	+		GFF2477	0.60	+0.5
2,501,189	+		GFF2477	0.60	+0.3
2,501,192	-		GFF2477	0.60	-0.6
2,501,192	-		GFF2477	0.60	-0.3
2,501,192	-		GFF2477	0.60	-0.7
2,501,203	+		GFF2477	0.62	-1.6