Strain Fitness in Sphingobium sp. HT1-2 around GFF2459

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,479,919	+		GFF2458	0.17	-0.7
2,479,919	+		GFF2458	0.17	-1.2
2,479,927	-		GFF2458	0.17	+0.6
2,479,941	+		GFF2458	0.19	-0.4
2,479,949	-		GFF2458	0.19	+1.1
2,479,959	-		GFF2458	0.20	-1.7
2,479,966	+		GFF2458	0.21	+0.3
2,479,974	-		GFF2458	0.21	-0.1
2,479,990	+		GFF2458	0.23	-0.0
2,479,992	-		GFF2458	0.23	-2.2
2,479,997	+		GFF2458	0.23	+0.3
2,479,999	-		GFF2458	0.23	-1.3
2,480,013	-		GFF2458	0.25	-1.3
2,480,016	+		GFF2458	0.25	+1.2
2,480,021	+		GFF2458	0.25	-2.6
2,480,021	+		GFF2458	0.25	-0.9
2,480,029	-		GFF2458	0.26	-0.2
2,480,035	+		GFF2458	0.27	-1.1
2,480,035	+		GFF2458	0.27	-3.5
2,480,043	-		GFF2458	0.27	+0.5
2,480,059	+		GFF2458	0.29	-0.1
2,480,059	+		GFF2458	0.29	-0.2
2,480,059	+		GFF2458	0.29	-0.1
2,480,059	+		GFF2458	0.29	+0.4
2,480,059	+		GFF2458	0.29	-1.2
2,480,067	-		GFF2458	0.29	-1.9
2,480,067	-		GFF2458	0.29	+1.6
2,480,101	-		GFF2458	0.32	+1.2
2,480,104	+		GFF2458	0.32	+1.4
2,480,155	+		GFF2458	0.37	+1.6
2,480,175	-		GFF2458	0.38	+1.1
2,480,186	+		GFF2458	0.39	-1.2
2,480,209	+		GFF2458	0.41	-0.5
2,480,209	-		GFF2458	0.41	-0.7
2,480,222	-		GFF2458	0.42	+0.7
2,480,231	+		GFF2458	0.43	-0.7
2,480,267	+		GFF2458	0.46	+0.3
2,480,267	+		GFF2458	0.46	-0.8
2,480,275	-		GFF2458	0.47	+0.4
2,480,275	-		GFF2458	0.47	-0.3
2,480,276	+		GFF2458	0.47	-0.4
2,480,303	-		GFF2458	0.49	-0.4
2,480,303	-		GFF2458	0.49	+0.8
2,480,313	+		GFF2458	0.50	-1.2
2,480,322	-		GFF2458	0.51	+0.2
2,480,327	-		GFF2458	0.51	-1.3
2,480,345	-		GFF2458	0.53	-1.3
2,480,356	-		GFF2458	0.54	+1.6
2,480,363	+		GFF2458	0.54	-1.0
2,480,370	-		GFF2458	0.55	-1.1
2,480,371	-		GFF2458	0.55	-1.7
2,480,373	+		GFF2458	0.55	-1.8
2,480,379	+		GFF2458	0.56	+0.1
2,480,381	-		GFF2458	0.56	+0.0
2,480,381	-		GFF2458	0.56	-1.8
2,480,381	-		GFF2458	0.56	+0.7
2,480,381	-		GFF2458	0.56	-1.0
2,480,382	-		GFF2458	0.56	-1.5
2,480,388	-		GFF2458	0.56	+0.2
2,480,411	+		GFF2458	0.58	-1.2
2,480,417	+		GFF2458	0.59	-1.7
2,480,419	-		GFF2458	0.59	-0.9
2,480,419	-		GFF2458	0.59	-0.0
2,480,428	-		GFF2458	0.60	-0.6
2,480,428	-		GFF2458	0.60	+0.3
2,480,431	-		GFF2458	0.60	+0.6
2,480,431	-		GFF2458	0.60	+0.5
2,480,470	+		GFF2458	0.63	+0.5
2,480,470	+		GFF2458	0.63	+2.1
2,480,486	+		GFF2458	0.65	+0.7
2,480,522	+		GFF2458	0.68	+0.2
2,480,533	+		GFF2458	0.69	-0.4
2,480,533	+		GFF2458	0.69	-1.6
2,480,541	-		GFF2458	0.69	-0.5
2,480,541	-		GFF2458	0.69	+0.7
2,480,543	+		GFF2458	0.70	-0.2
2,480,543	+		GFF2458	0.70	+0.6
2,480,551	-		GFF2458	0.70	-0.1
2,480,562	+		GFF2458	0.71	+0.7
2,480,562	+		GFF2458	0.71	-1.3
2,480,581	+		GFF2458	0.73	+0.3
2,480,581	+		GFF2458	0.73	-0.7
2,480,581	+		GFF2458	0.73	-1.1
2,480,581	+		GFF2458	0.73	+0.1
2,480,581	+		GFF2458	0.73	-0.6
2,480,581	+		GFF2458	0.73	+0.2
2,480,585	-		GFF2458	0.73	-0.7
2,480,589	-		GFF2458	0.74	-0.2
2,480,589	-		GFF2458	0.74	+0.3
2,480,589	-		GFF2458	0.74	-1.1
2,480,589	-		GFF2458	0.74	-0.6
2,480,589	-		GFF2458	0.74	-1.6
2,480,589	-		GFF2458	0.74	+0.4
2,480,589	-		GFF2458	0.74	+0.7
2,480,589	-		GFF2458	0.74	+1.0
2,480,594	+		GFF2458	0.74	+1.3
2,480,596	+		GFF2458	0.74	-0.3
2,480,604	-		GFF2458	0.75	-0.6
2,480,616	-		GFF2458	0.76	-0.8
2,480,631	-		GFF2458	0.77	-1.2
2,480,659	-		GFF2458	0.79	+2.0
2,480,664	+		GFF2458	0.80	+0.1
2,480,677	-		GFF2458	0.81	+0.8
2,480,699	+		GFF2458	0.83	+1.1
2,480,739	-		GFF2458	0.86	+0.8
2,480,765	+		GFF2458	0.88	-0.7
2,480,765	+		GFF2458	0.88	-0.3
2,480,788	+				-0.2
2,480,788	+				-0.1
2,480,796	-				+0.0
2,480,798	+				-1.3
2,480,798	+				-2.7
2,480,798	+				+0.0
2,480,806	-				-1.1
2,480,806	-				-0.4
2,480,806	-				-0.4
2,480,817	-				-1.6
2,480,817	-				-2.0
2,480,827	-				+0.9
2,480,852	+				-1.2
2,480,901	-				-0.8
2,480,977	+				-1.4
2,480,991	+		GFF2459	0.11	+0.0
2,481,014	+		GFF2459	0.14	-0.2
2,481,014	+		GFF2459	0.14	-1.2
2,481,022	-		GFF2459	0.15	-1.9
2,481,022	-		GFF2459	0.15	-1.0
2,481,022	-		GFF2459	0.15	+1.3
2,481,022	-		GFF2459	0.15	+0.4
2,481,022	-		GFF2459	0.15	+0.1
2,481,023	+		GFF2459	0.15	+0.0
2,481,023	+		GFF2459	0.15	-0.3
2,481,031	-		GFF2459	0.16	+0.3
2,481,031	-		GFF2459	0.16	+0.1
2,481,065	-		GFF2459	0.21	-1.6
2,481,081	-		GFF2459	0.23	-2.3
2,481,083	-		GFF2459	0.23	-1.3
2,481,094	-		GFF2459	0.25	+0.7
2,481,113	-		GFF2459	0.27	-0.6
2,481,113	-		GFF2459	0.27	+0.3
2,481,124	-		GFF2459	0.28	+1.1
2,481,141	+		GFF2459	0.31	+0.3
2,481,166	+		GFF2459	0.34	-0.6
2,481,181	-		GFF2459	0.36	+0.1
2,481,227	+		GFF2459	0.42	+0.9
2,481,236	-		GFF2459	0.43	-0.3
2,481,260	+		GFF2459	0.46	+0.6
2,481,307	-		GFF2459	0.52	-1.4
2,481,307	-		GFF2459	0.52	-1.4
2,481,346	+		GFF2459	0.57	+0.6
2,481,346	+		GFF2459	0.57	+0.1
2,481,359	-		GFF2459	0.59	+0.9
2,481,369	-		GFF2459	0.60	+0.4
2,481,369	-		GFF2459	0.60	-0.7
2,481,369	-		GFF2459	0.60	-1.2
2,481,369	-		GFF2459	0.60	-1.1
2,481,369	-		GFF2459	0.60	-2.3
2,481,369	-		GFF2459	0.60	-2.2
2,481,369	-		GFF2459	0.60	-0.6
2,481,386	+		GFF2459	0.62	-0.3
2,481,386	+		GFF2459	0.62	+1.0
2,481,394	+		GFF2459	0.63	+0.1
2,481,397	+		GFF2459	0.64	-0.1
2,481,425	+		GFF2459	0.67	-0.4
2,481,425	+		GFF2459	0.67	-1.4
2,481,425	+		GFF2459	0.67	+0.4
2,481,425	+		GFF2459	0.67	+0.3
2,481,425	+		GFF2459	0.67	-0.7
2,481,425	+		GFF2459	0.67	-0.2
2,481,425	+		GFF2459	0.67	-1.4
2,481,433	-		GFF2459	0.68	-1.1
2,481,433	-		GFF2459	0.68	-0.7
2,481,433	-		GFF2459	0.68	+0.1
2,481,433	-		GFF2459	0.68	-0.3
2,481,433	-		GFF2459	0.68	-0.3
2,481,433	-		GFF2459	0.68	-0.0
2,481,433	-		GFF2459	0.68	+0.0
2,481,435	+		GFF2459	0.69	-1.8
2,481,435	+		GFF2459	0.69	-1.2
2,481,490	-		GFF2459	0.76	-0.2
2,481,490	-		GFF2459	0.76	-1.6
2,481,534	-		GFF2459	0.82	+1.1
2,481,546	+		GFF2459	0.83	-0.6
2,481,565	+		GFF2459	0.86	+0.2
2,481,573	-		GFF2459	0.87	-1.2
2,481,590	+		GFF2459	0.89	+0.8
2,481,598	-		GFF2459	0.90	+1.3
2,481,606	+				-2.1
2,481,606	+				-0.1
2,481,614	-				-1.6
2,481,614	-				+0.4
2,481,629	+				+1.0
2,481,636	-				+0.4
2,481,670	+				-0.4
2,481,678	-				-0.2
2,481,679	-				+0.3
2,481,683	+				+0.5
2,481,701	+				+0.5
2,481,706	+				+1.1
2,481,706	+				+0.3
2,481,708	+				-0.2
2,481,708	+				-2.4
2,481,709	-				-2.0
2,481,709	-				-1.1
2,481,711	-				+0.8
2,481,714	-				-0.7
2,481,714	-				-0.5
2,481,716	-				-1.0
2,481,721	+				-0.3
2,481,724	-				-0.5
2,481,738	+				+1.0
2,481,743	+				-0.1
2,481,743	+				-0.1
2,481,743	+				-1.1
2,481,743	+				+1.5
2,481,743	+				-0.5
2,481,751	-				-0.4
2,481,782	+				-1.8
2,481,790	+				+0.1
2,481,800	+				-0.1
2,481,805	+				-1.6
2,481,821	-				+0.5
2,481,822	+				-0.8
2,481,822	+				-0.3
2,481,822	+				-1.6
2,481,822	+				-0.5
2,481,822	+				-0.3
2,481,822	+				-1.6
2,481,822	+				-0.2
2,481,822	+				-1.4
2,481,837	+				-0.7
2,481,837	+				+1.1
2,481,901	+				-2.4