Strain Fitness in Sphingobium sp. HT1-2 around GFF2458

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,478,724	+		GFF2457	0.19	+0.0
2,478,736	+		GFF2457	0.20	-1.3
2,478,736	+		GFF2457	0.20	-0.7
2,478,736	+		GFF2457	0.20	-0.2
2,478,742	-		GFF2457	0.21	-0.7
2,478,742	-		GFF2457	0.21	+0.4
2,478,744	-		GFF2457	0.21	+0.5
2,478,765	+		GFF2457	0.23	-1.2
2,478,765	+		GFF2457	0.23	-2.1
2,478,765	+		GFF2457	0.23	+0.4
2,478,765	+		GFF2457	0.23	-0.3
2,478,773	-		GFF2457	0.24	+0.7
2,478,775	-		GFF2457	0.24	+1.6
2,478,787	+		GFF2457	0.25	+0.0
2,478,812	-		GFF2457	0.28	+1.3
2,478,813	+		GFF2457	0.28	+0.8
2,478,842	+		GFF2457	0.31	-0.4
2,478,856	+		GFF2457	0.32	+0.2
2,478,880	+		GFF2457	0.34	-0.6
2,478,882	-		GFF2457	0.35	-0.9
2,478,888	-		GFF2457	0.35	-0.4
2,478,888	-		GFF2457	0.35	-1.2
2,478,893	-		GFF2457	0.36	-1.0
2,478,893	-		GFF2457	0.36	+0.8
2,478,893	-		GFF2457	0.36	-1.4
2,478,893	-		GFF2457	0.36	-0.3
2,478,906	-		GFF2457	0.37	-1.1
2,478,919	+		GFF2457	0.38	-0.7
2,478,927	-		GFF2457	0.39	-0.2
2,478,927	-		GFF2457	0.39	-0.7
2,478,927	-		GFF2457	0.39	-0.0
2,478,930	+		GFF2457	0.39	-0.2
2,478,936	+		GFF2457	0.40	+0.3
2,478,936	+		GFF2457	0.40	+0.0
2,478,936	+		GFF2457	0.40	+0.3
2,478,941	+		GFF2457	0.40	+0.9
2,478,944	-		GFF2457	0.41	+0.3
2,478,944	-		GFF2457	0.41	-0.6
2,478,946	+		GFF2457	0.41	+0.4
2,478,948	+		GFF2457	0.41	-0.4
2,478,959	-		GFF2457	0.42	-0.4
2,478,969	-		GFF2457	0.43	-1.4
2,478,985	-		GFF2457	0.45	+0.4
2,478,985	-		GFF2457	0.45	-0.7
2,478,990	+		GFF2457	0.45	+0.2
2,478,990	+		GFF2457	0.45	-0.2
2,478,990	+		GFF2457	0.45	-0.1
2,478,992	+		GFF2457	0.45	-0.7
2,478,993	-		GFF2457	0.45	-0.4
2,478,993	-		GFF2457	0.45	+0.6
2,478,998	-		GFF2457	0.46	+0.6
2,478,998	-		GFF2457	0.46	-1.7
2,479,026	-		GFF2457	0.49	+0.2
2,479,051	+		GFF2457	0.51	-1.8
2,479,062	+		GFF2457	0.52	-0.3
2,479,062	+		GFF2457	0.52	-0.6
2,479,062	+		GFF2457	0.52	-0.8
2,479,063	+		GFF2457	0.52	+1.1
2,479,063	+		GFF2457	0.52	-0.7
2,479,063	+		GFF2457	0.52	+0.6
2,479,063	+		GFF2457	0.52	+1.1
2,479,070	-		GFF2457	0.53	-1.0
2,479,071	-		GFF2457	0.53	-0.4
2,479,071	-		GFF2457	0.53	+0.7
2,479,071	-		GFF2457	0.53	+0.8
2,479,071	-		GFF2457	0.53	-0.8
2,479,091	+		GFF2457	0.55	-0.5
2,479,091	+		GFF2457	0.55	+1.1
2,479,091	+		GFF2457	0.55	-1.4
2,479,091	+		GFF2457	0.55	+0.7
2,479,091	+		GFF2457	0.55	+0.6
2,479,098	-		GFF2457	0.56	-0.2
2,479,099	-		GFF2457	0.56	-0.1
2,479,099	-		GFF2457	0.56	+0.9
2,479,099	-		GFF2457	0.56	+1.1
2,479,120	+		GFF2457	0.58	-0.3
2,479,120	+		GFF2457	0.58	-0.3
2,479,128	-		GFF2457	0.59	-0.1
2,479,134	+		GFF2457	0.59	-0.7
2,479,187	-		GFF2457	0.64	+1.0
2,479,207	+		GFF2457	0.66	+1.2
2,479,207	+		GFF2457	0.66	-0.2
2,479,207	+		GFF2457	0.66	+0.7
2,479,214	-		GFF2457	0.67	+0.7
2,479,215	-		GFF2457	0.67	+0.4
2,479,215	-		GFF2457	0.67	-1.4
2,479,215	-		GFF2457	0.67	-0.1
2,479,221	-		GFF2457	0.68	-0.3
2,479,235	+		GFF2457	0.69	-0.6
2,479,236	+		GFF2457	0.69	+0.6
2,479,271	+		GFF2457	0.73	+0.6
2,479,287	-		GFF2457	0.74	-1.1
2,479,298	+		GFF2457	0.75	-0.7
2,479,298	+		GFF2457	0.75	+0.0
2,479,298	+		GFF2457	0.75	-0.6
2,479,298	+		GFF2457	0.75	+1.1
2,479,298	+		GFF2457	0.75	-0.4
2,479,298	+		GFF2457	0.75	+0.8
2,479,306	-		GFF2457	0.76	-0.2
2,479,306	-		GFF2457	0.76	+0.1
2,479,306	-		GFF2457	0.76	+0.0
2,479,306	-		GFF2457	0.76	+1.1
2,479,306	-		GFF2457	0.76	-1.7
2,479,306	-		GFF2457	0.76	+0.3
2,479,306	-		GFF2457	0.76	-0.4
2,479,312	+		GFF2457	0.77	-0.0
2,479,349	+		GFF2457	0.80	+0.1
2,479,349	+		GFF2457	0.80	-1.1
2,479,349	+		GFF2457	0.80	-0.2
2,479,357	-		GFF2457	0.81	-1.4
2,479,357	-		GFF2457	0.81	-2.4
2,479,357	-		GFF2457	0.81	-0.7
2,479,357	-		GFF2457	0.81	-1.9
2,479,362	-		GFF2457	0.82	-1.7
2,479,366	+		GFF2457	0.82	-0.7
2,479,366	+		GFF2457	0.82	+0.3
2,479,374	-		GFF2457	0.83	-0.3
2,479,374	-		GFF2457	0.83	-2.9
2,479,401	+		GFF2457	0.85	+0.1
2,479,441	-		GFF2457	0.89	-0.2
2,479,441	-		GFF2457	0.89	-0.2
2,479,451	+				+0.6
2,479,451	-				-0.3
2,479,451	-				-0.8
2,479,451	-				-1.3
2,479,451	-				-1.4
2,479,452	-				-0.3
2,479,462	-				-0.6
2,479,476	+				+0.0
2,479,491	+				-1.7
2,479,499	-				-0.7
2,479,499	-				-0.6
2,479,499	-				+0.2
2,479,503	-				+0.3
2,479,520	+				+1.5
2,479,527	-				-1.3
2,479,527	-				-1.8
2,479,529	+				-1.0
2,479,537	-				+0.2
2,479,549	+				-1.7
2,479,549	+				-0.2
2,479,574	-				-1.1
2,479,577	+				-0.8
2,479,577	-				+1.1
2,479,579	+				+0.2
2,479,582	+				-0.2
2,479,587	+				-0.3
2,479,664	-				+0.5
2,479,676	+				+0.1
2,479,678	-				-2.7
2,479,684	-				+0.4
2,479,686	+				+1.7
2,479,686	+				-0.7
2,479,686	+				+0.3
2,479,686	+				-0.3
2,479,686	+				-0.2
2,479,686	+				-0.4
2,479,686	+				+0.8
2,479,686	+				+0.1
2,479,686	+				-0.2
2,479,686	+				-0.8
2,479,686	+				-0.8
2,479,686	+				+2.1
2,479,686	+				+0.8
2,479,686	+				-0.2
2,479,686	+				-0.1
2,479,686	+				+0.8
2,479,686	+				-0.6
2,479,686	+				-1.1
2,479,686	+				-0.3
2,479,686	+				+0.2
2,479,686	+				-1.4
2,479,686	+				-0.4
2,479,686	+				+1.1
2,479,686	+				-0.8
2,479,686	+				-0.2
2,479,686	+				-0.4
2,479,686	+				-0.9
2,479,686	+				+1.2
2,479,686	+				-1.0
2,479,686	+				-0.6
2,479,686	+				+0.4
2,479,686	+				+0.6
2,479,686	+				+0.0
2,479,686	+				+0.2
2,479,686	+				-0.3
2,479,686	+				-0.4
2,479,686	+				+0.9
2,479,686	+				-1.7
2,479,686	+				-0.4
2,479,686	+				-0.4
2,479,686	+				-0.5
2,479,686	+				-1.0
2,479,686	+				-1.8
2,479,686	+				+0.7
2,479,686	+				-2.9
2,479,686	+				-1.2
2,479,686	+				-0.4
2,479,686	+				-0.3
2,479,686	+				+0.9
2,479,686	+				+0.7
2,479,686	+				-1.6
2,479,686	+				-0.7
2,479,686	+				+0.1
2,479,686	+				+0.2
2,479,686	+				-0.2
2,479,686	+				+0.3
2,479,686	+				+1.3
2,479,686	+				-1.7
2,479,686	+				-1.9
2,479,686	+				+0.3
2,479,686	+				+0.0
2,479,686	+				-0.9
2,479,686	+				+0.0
2,479,686	+				+0.3
2,479,686	+				+0.4
2,479,686	+				-1.9
2,479,686	+				-1.0
2,479,686	+				-0.3
2,479,686	+				+1.3
2,479,686	+				-0.2
2,479,686	+				+0.2
2,479,686	+				-2.8
2,479,686	+				-0.3
2,479,686	+				-0.9
2,479,686	+				-0.7
2,479,686	+				-0.3
2,479,686	+				-1.4
2,479,686	+				-0.7
2,479,686	+				-1.3
2,479,686	+				-2.1
2,479,686	+				-0.0
2,479,686	+				+0.2
2,479,686	+				-0.1
2,479,686	+				-1.0
2,479,686	+				-0.1
2,479,686	+				+0.2
2,479,686	+				+0.6
2,479,686	+				-0.2
2,479,686	+				-0.8
2,479,686	+				+2.0
2,479,686	+				+1.2
2,479,686	+				+0.3
2,479,686	+				+0.4
2,479,686	+				-0.5
2,479,686	+				-0.2
2,479,686	+				-1.2
2,479,686	+				-1.1
2,479,686	+				-0.7
2,479,686	+				-1.1
2,479,686	+				-1.4
2,479,686	+				+1.2
2,479,686	+				-0.1
2,479,686	+				-1.7
2,479,686	+				-0.4
2,479,686	+				-1.0
2,479,686	+				-0.5
2,479,686	+				+0.5
2,479,686	+				-0.6
2,479,686	+				+0.1
2,479,686	+				-1.2
2,479,686	+				-2.0
2,479,691	+				+0.6
2,479,694	-				-0.0
2,479,694	-				-0.6
2,479,694	-				+1.1
2,479,694	-				-0.2
2,479,694	-				+0.7
2,479,694	-				-0.2
2,479,694	-				-0.4
2,479,694	-				+0.4
2,479,694	-				-0.2
2,479,694	-				-0.3
2,479,694	-				-0.5
2,479,694	-				+0.3
2,479,694	-				-0.3
2,479,694	-				-0.2
2,479,694	-				-0.2
2,479,694	-				+0.9
2,479,694	-				-1.2
2,479,694	-				-1.1
2,479,694	-				+0.3
2,479,694	-				+0.3
2,479,694	-				+0.4
2,479,694	-				-1.2
2,479,694	-				-1.1
2,479,694	-				-0.0
2,479,694	-				-0.4
2,479,694	-				+0.0
2,479,694	-				-0.8
2,479,694	-				+0.3
2,479,694	-				-0.7
2,479,694	-				-0.9
2,479,694	-				+1.2
2,479,694	-				-1.2
2,479,694	-				+0.7
2,479,694	-				+0.4
2,479,694	-				+0.5
2,479,694	-				-0.1
2,479,694	-				-1.4
2,479,694	-				+1.3
2,479,694	-				-1.6
2,479,694	-				-1.3
2,479,694	-				+0.8
2,479,694	-				+0.1
2,479,694	-				-0.4
2,479,694	-				+0.7
2,479,694	-				+0.3
2,479,694	-				+1.0
2,479,694	-				-2.1
2,479,694	-				-1.5
2,479,694	-				-1.0
2,479,694	-				-0.6
2,479,694	-				-0.6
2,479,694	-				+0.6
2,479,694	-				+0.4
2,479,694	-				-0.8
2,479,694	-				-0.4
2,479,694	-				-1.2
2,479,694	-				+0.3
2,479,694	-				+1.3
2,479,694	-				-1.7
2,479,694	-				-0.3
2,479,694	-				+1.9
2,479,694	-				-1.5
2,479,694	-				-0.6
2,479,694	-				+0.3
2,479,694	-				+0.1
2,479,694	-				+0.4
2,479,694	-				+0.2
2,479,694	-				-0.1
2,479,694	-				+0.7
2,479,694	-				-1.0
2,479,694	-				-0.1
2,479,694	-				-0.7
2,479,694	-				+0.8
2,479,694	-				-1.6
2,479,694	-				+0.7
2,479,694	-				-0.1
2,479,694	-				+1.2
2,479,694	-				-0.3
2,479,694	-				-2.1
2,479,694	-				-0.7
2,479,694	-				-1.4
2,479,694	-				+0.3
2,479,694	-				-0.4
2,479,694	-				+0.4
2,479,694	-				-1.4
2,479,694	-				-0.1
2,479,694	-				-0.2
2,479,694	-				+1.2
2,479,694	-				-0.7
2,479,694	-				-0.9
2,479,694	-				-0.2
2,479,694	-				-1.1
2,479,694	-				-1.9
2,479,694	-				+0.6
2,479,696	+				+0.2
2,479,699	-				+0.1
2,479,699	-				+0.1
2,479,704	-				-0.2
2,479,714	+				-0.5
2,479,722	-				-0.4
2,479,736	+				-1.6
2,479,736	+				-1.2
2,479,741	+				-1.0
2,479,741	+				+0.3
2,479,741	+				-0.5
2,479,741	+				-0.8
2,479,741	+				+0.8
2,479,744	-				-2.3
2,479,746	+				-0.2
2,479,749	-				+0.0
2,479,749	-				-1.3
2,479,749	-				-0.5
2,479,749	-				-1.7
2,479,749	-				-2.2
2,479,749	-				-1.1
2,479,749	-				+0.4
2,479,749	-				-0.2
2,479,749	-				-1.0
2,479,749	-				-1.3
2,479,764	+				-0.4
2,479,771	-				-0.4
2,479,772	-				-1.1
2,479,772	-				-0.9
2,479,785	+				-0.7
2,479,785	+				+0.4
2,479,785	+				-0.7
2,479,785	+				+0.2
2,479,785	+				-0.3
2,479,785	+				+1.8
2,479,785	+				-1.5
2,479,785	+				-1.3
2,479,785	+				-0.9
2,479,785	+				-0.1
2,479,785	+				-0.8
2,479,785	+				-1.7
2,479,785	+				-0.6
2,479,785	+				+0.8
2,479,785	+				-0.9
2,479,785	+				-0.3
2,479,785	+				+1.7
2,479,790	+				-0.5
2,479,793	-				-0.7
2,479,793	-				-1.7
2,479,793	-				+0.4
2,479,793	-				+0.3
2,479,793	-				-1.7
2,479,793	-				-2.4
2,479,793	-				-0.2
2,479,793	-				+1.1
2,479,793	-				-1.4
2,479,793	-				-0.7
2,479,793	-				+0.4
2,479,793	-				-1.3
2,479,793	-				+1.1
2,479,793	-				+1.4
2,479,793	-				+0.1
2,479,798	-				-0.9
2,479,798	-				-0.5
2,479,820	+				-0.7
2,479,836	-				-0.2
2,479,837	-				+0.4
2,479,844	+		GFF2458	0.10	-3.1
2,479,861	+		GFF2458	0.12	+0.1
2,479,877	+		GFF2458	0.13	-0.6
2,479,882	+		GFF2458	0.14	-2.1
2,479,885	-		GFF2458	0.14	+0.0
2,479,890	-		GFF2458	0.14	-1.3
2,479,895	-		GFF2458	0.15	-0.6
2,479,896	-		GFF2458	0.15	+0.3
2,479,919	+		GFF2458	0.17	-0.7
2,479,919	+		GFF2458	0.17	-1.2
2,479,927	-		GFF2458	0.17	+0.6
2,479,941	+		GFF2458	0.19	-0.4
2,479,949	-		GFF2458	0.19	+1.1
2,479,959	-		GFF2458	0.20	-1.7
2,479,966	+		GFF2458	0.21	+0.3
2,479,974	-		GFF2458	0.21	-0.1
2,479,990	+		GFF2458	0.23	-0.0
2,479,992	-		GFF2458	0.23	-2.2
2,479,997	+		GFF2458	0.23	+0.3
2,479,999	-		GFF2458	0.23	-1.3
2,480,013	-		GFF2458	0.25	-1.3
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2,480,765	+		GFF2458	0.88	-0.3
2,480,788	+				-0.2
2,480,788	+				-0.1
2,480,796	-				+0.0
2,480,798	+				-1.3
2,480,798	+				-2.7
2,480,798	+				+0.0
2,480,806	-				-1.1
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2,480,806	-				-0.4
2,480,817	-				-1.6
2,480,817	-				-2.0
2,480,827	-				+0.9
2,480,852	+				-1.2
2,480,901	-				-0.8
2,480,977	+				-1.4
2,480,991	+		GFF2459	0.11	+0.0
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2,481,083	-		GFF2459	0.23	-1.3
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2,481,307	-		GFF2459	0.52	-1.4
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2,481,346	+		GFF2459	0.57	+0.1
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2,481,369	-		GFF2459	0.60	-1.1
2,481,369	-		GFF2459	0.60	-2.3
2,481,369	-		GFF2459	0.60	-2.2
2,481,369	-		GFF2459	0.60	-0.6
2,481,386	+		GFF2459	0.62	-0.3
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2,481,606	+				-2.1
2,481,606	+				-0.1
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2,481,614	-				+0.4
2,481,629	+				+1.0
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2,481,670	+				-0.4
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2,481,708	+				-2.4
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2,481,709	-				-1.1
2,481,711	-				+0.8
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2,481,743	+				-0.1
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2,481,782	+				-1.8
2,481,790	+				+0.1
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