Strain Fitness in Sphingobium sp. HT1-2 around GFF2445

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,462,846	-		GFF2443	0.86	-0.7
2,462,882	+				+1.5
2,462,904	+				+1.0
2,462,906	+				-0.3
2,462,925	-				-2.4
2,462,950	+				+0.6
2,462,950	+				-0.2
2,462,955	+				-1.5
2,462,963	+				+0.2
2,463,017	+		GFF2444	0.11	-1.2
2,463,020	+		GFF2444	0.11	+0.2
2,463,028	+		GFF2444	0.12	-2.2
2,463,036	-		GFF2444	0.13	-0.3
2,463,036	-		GFF2444	0.13	-0.6
2,463,036	-		GFF2444	0.13	-1.8
2,463,036	-		GFF2444	0.13	-0.2
2,463,069	+		GFF2444	0.18	+0.8
2,463,095	-		GFF2444	0.21	+0.4
2,463,095	-		GFF2444	0.21	-1.2
2,463,098	+		GFF2444	0.21	-0.3
2,463,106	-		GFF2444	0.22	-1.1
2,463,108	+		GFF2444	0.23	-1.1
2,463,108	+		GFF2444	0.23	+0.2
2,463,108	+		GFF2444	0.23	-0.1
2,463,108	+		GFF2444	0.23	-2.8
2,463,108	+		GFF2444	0.23	-0.7
2,463,108	+		GFF2444	0.23	-0.3
2,463,108	+		GFF2444	0.23	-1.1
2,463,111	-		GFF2444	0.23	-1.7
2,463,111	-		GFF2444	0.23	+1.0
2,463,116	-		GFF2444	0.24	+0.7
2,463,116	-		GFF2444	0.24	-0.7
2,463,116	-		GFF2444	0.24	-0.7
2,463,116	-		GFF2444	0.24	-0.6
2,463,116	-		GFF2444	0.24	-0.3
2,463,116	-		GFF2444	0.24	-1.5
2,463,155	+		GFF2444	0.29	-0.9
2,463,170	+		GFF2444	0.31	+0.2
2,463,170	+		GFF2444	0.31	+1.5
2,463,178	-		GFF2444	0.32	-0.4
2,463,189	-		GFF2444	0.33	-1.8
2,463,205	+		GFF2444	0.35	-1.0
2,463,205	+		GFF2444	0.35	-2.5
2,463,218	-		GFF2444	0.37	-1.8
2,463,218	-		GFF2444	0.37	-0.4
2,463,292	-		GFF2444	0.47	-1.2
2,463,292	-		GFF2444	0.47	+0.6
2,463,297	-		GFF2444	0.48	-1.9
2,463,311	+		GFF2444	0.49	-0.1
2,463,319	-		GFF2444	0.50	-1.0
2,463,321	+		GFF2444	0.51	-0.5
2,463,323	+		GFF2444	0.51	-0.8
2,463,323	+		GFF2444	0.51	-1.5
2,463,323	+		GFF2444	0.51	-0.3
2,463,326	-		GFF2444	0.51	+0.4
2,463,329	-		GFF2444	0.52	+0.4
2,463,331	-		GFF2444	0.52	-0.7
2,463,347	-		GFF2444	0.54	-1.8
2,463,350	+		GFF2444	0.54	-2.3
2,463,365	+		GFF2444	0.56	-1.3
2,463,366	-		GFF2444	0.57	-2.1
2,463,366	-		GFF2444	0.57	-0.5
2,463,368	-		GFF2444	0.57	+0.2
2,463,376	-		GFF2444	0.58	-1.8
2,463,387	+		GFF2444	0.59	-0.2
2,463,387	+		GFF2444	0.59	+0.8
2,463,392	+		GFF2444	0.60	-0.5
2,463,392	+		GFF2444	0.60	-0.7
2,463,395	-		GFF2444	0.60	-0.1
2,463,395	-		GFF2444	0.60	-1.1
2,463,400	-		GFF2444	0.61	-0.5
2,463,402	+		GFF2444	0.61	-0.3
2,463,402	+		GFF2444	0.61	-2.3
2,463,404	-		GFF2444	0.62	+0.1
2,463,407	+		GFF2444	0.62	+0.1
2,463,410	-		GFF2444	0.62	-1.1
2,463,410	-		GFF2444	0.62	-0.0
2,463,410	-		GFF2444	0.62	-0.4
2,463,415	-		GFF2444	0.63	-0.3
2,463,417	+		GFF2444	0.63	+0.4
2,463,423	-		GFF2444	0.64	+0.4
2,463,437	+		GFF2444	0.66	-0.9
2,463,448	+		GFF2444	0.67	-2.2
2,463,460	+		GFF2444	0.69	-0.5
2,463,486	+		GFF2444	0.72	-1.7
2,463,495	-		GFF2444	0.73	+0.2
2,463,532	+		GFF2444	0.78	-0.7
2,463,532	+		GFF2444	0.78	-1.3
2,463,532	+		GFF2444	0.78	-0.3
2,463,532	+		GFF2444	0.78	+0.5
2,463,532	+		GFF2444	0.78	-0.3
2,463,532	+		GFF2444	0.78	+0.7
2,463,532	+		GFF2444	0.78	+0.2
2,463,532	+		GFF2444	0.78	-0.0
2,463,532	+		GFF2444	0.78	-0.1
2,463,532	+		GFF2444	0.78	-0.6
2,463,532	+		GFF2444	0.78	-1.5
2,463,532	+		GFF2444	0.78	+0.1
2,463,537	+		GFF2444	0.79	-1.0
2,463,540	-		GFF2444	0.79	-1.8
2,463,540	-		GFF2444	0.79	-0.9
2,463,540	-		GFF2444	0.79	+0.7
2,463,540	-		GFF2444	0.79	-0.2
2,463,540	-		GFF2444	0.79	-0.0
2,463,540	-		GFF2444	0.79	-0.8
2,463,540	-		GFF2444	0.79	-0.5
2,463,540	-		GFF2444	0.79	+1.5
2,463,551	+		GFF2444	0.81	+0.9
2,463,559	+		GFF2444	0.82	-0.3
2,463,572	-		GFF2444	0.84	+0.7
2,463,592	+		GFF2444	0.86	-1.3
2,463,600	-		GFF2444	0.87	+0.9
2,463,600	-		GFF2444	0.87	+0.1
2,463,608	+		GFF2444	0.88	-2.0
2,463,628	+				+0.2
2,463,628	+				-0.4
2,463,628	+				-1.1
2,463,628	+				-1.7
2,463,628	+				-0.6
2,463,628	+				-0.2
2,463,628	+				-0.3
2,463,628	+				-2.0
2,463,636	-				-0.3
2,463,636	-				-0.3
2,463,637	-				-0.8
2,463,637	-				+0.7
2,463,641	-				+0.9
2,463,648	+				+0.8
2,463,650	-				+0.5
2,463,700	+				-0.4
2,463,710	-				-3.0
2,463,710	-				-1.1
2,463,741	-				+0.1
2,463,743	+				-0.8
2,463,751	-				-1.3
2,463,751	-				-1.3
2,463,775	+				+0.7
2,463,791	-				-0.8
2,463,819	-				-0.3
2,463,819	-				-0.3
2,463,845	-				+0.3
2,463,880	-				-1.3
2,463,904	+				-0.1
2,463,905	+				-0.6
2,463,910	+				+0.2
2,463,910	+				-1.8
2,463,910	+				+0.2
2,463,910	+				-1.3
2,463,910	+				+0.4
2,463,913	-				-1.0
2,463,918	-				-1.8
2,463,918	-				-0.1
2,463,968	+		GFF2445	0.11	-0.5
2,463,977	-		GFF2445	0.12	-0.6
2,464,009	+		GFF2445	0.15	-1.2
2,464,009	+		GFF2445	0.15	-1.0
2,464,050	-		GFF2445	0.18	+0.3
2,464,052	+		GFF2445	0.18	+0.7
2,464,057	+		GFF2445	0.19	+0.7
2,464,065	-		GFF2445	0.20	-1.1
2,464,078	-		GFF2445	0.21	-0.3
2,464,078	-		GFF2445	0.21	-1.9
2,464,078	-		GFF2445	0.21	-1.5
2,464,080	-		GFF2445	0.21	-1.5
2,464,097	+		GFF2445	0.22	+1.2
2,464,097	+		GFF2445	0.22	-1.6
2,464,105	-		GFF2445	0.23	-0.7
2,464,116	-		GFF2445	0.24	+0.2
2,464,116	-		GFF2445	0.24	-0.2
2,464,133	+		GFF2445	0.26	-1.5
2,464,141	-		GFF2445	0.26	+1.4
2,464,146	+		GFF2445	0.27	-2.2
2,464,146	+		GFF2445	0.27	-0.1
2,464,162	-		GFF2445	0.28	+0.5
2,464,165	-		GFF2445	0.28	-1.8
2,464,170	-		GFF2445	0.29	-0.1
2,464,183	+		GFF2445	0.30	+1.1
2,464,191	-		GFF2445	0.31	-1.3
2,464,215	+		GFF2445	0.33	-0.3
2,464,218	-		GFF2445	0.33	+1.0
2,464,231	+		GFF2445	0.34	-0.2
2,464,275	+		GFF2445	0.38	-0.5
2,464,278	-		GFF2445	0.38	-0.3
2,464,280	+		GFF2445	0.38	+0.2
2,464,287	+		GFF2445	0.39	+0.3
2,464,294	+		GFF2445	0.39	+1.4
2,464,295	-		GFF2445	0.40	-0.2
2,464,295	-		GFF2445	0.40	-1.6
2,464,302	+		GFF2445	0.40	+0.1
2,464,303	-		GFF2445	0.40	+0.7
2,464,303	-		GFF2445	0.40	-0.2
2,464,308	-		GFF2445	0.41	+0.2
2,464,329	+		GFF2445	0.43	+0.8
2,464,329	+		GFF2445	0.43	-0.3
2,464,329	+		GFF2445	0.43	-1.5
2,464,329	+		GFF2445	0.43	-0.2
2,464,330	-		GFF2445	0.43	-0.4
2,464,335	-		GFF2445	0.43	+0.4
2,464,335	-		GFF2445	0.43	-1.1
2,464,335	-		GFF2445	0.43	-0.3
2,464,337	-		GFF2445	0.43	-0.2
2,464,337	-		GFF2445	0.43	-1.1
2,464,337	-		GFF2445	0.43	-0.3
2,464,337	-		GFF2445	0.43	-0.6
2,464,337	-		GFF2445	0.43	-2.6
2,464,337	-		GFF2445	0.43	+0.6
2,464,347	+		GFF2445	0.44	-0.1
2,464,347	+		GFF2445	0.44	-0.5
2,464,347	-		GFF2445	0.44	-1.1
2,464,374	-		GFF2445	0.46	-0.1
2,464,388	+		GFF2445	0.48	+0.7
2,464,388	+		GFF2445	0.48	-0.3
2,464,388	+		GFF2445	0.48	-0.0
2,464,389	-		GFF2445	0.48	-1.3
2,464,393	+		GFF2445	0.48	+0.7
2,464,409	-		GFF2445	0.49	-0.4
2,464,411	+		GFF2445	0.50	-0.3
2,464,411	+		GFF2445	0.50	+0.9
2,464,411	+		GFF2445	0.50	-1.6
2,464,411	+		GFF2445	0.50	-0.9
2,464,411	+		GFF2445	0.50	-1.7
2,464,419	-		GFF2445	0.50	-1.1
2,464,419	-		GFF2445	0.50	+1.1
2,464,432	+		GFF2445	0.51	+1.4
2,464,447	-		GFF2445	0.53	+0.2
2,464,451	+		GFF2445	0.53	-1.3
2,464,504	-		GFF2445	0.58	+0.7
2,464,554	+		GFF2445	0.62	-0.3
2,464,588	+		GFF2445	0.65	-0.8
2,464,588	+		GFF2445	0.65	-1.5
2,464,588	+		GFF2445	0.65	-0.0
2,464,588	+		GFF2445	0.65	+1.8
2,464,588	+		GFF2445	0.65	+0.0
2,464,588	+		GFF2445	0.65	+0.2
2,464,588	+		GFF2445	0.65	-0.4
2,464,588	+		GFF2445	0.65	-0.6
2,464,588	+		GFF2445	0.65	-1.7
2,464,596	-		GFF2445	0.66	-0.6
2,464,596	-		GFF2445	0.66	-2.1
2,464,599	+		GFF2445	0.66	+1.0
2,464,605	+		GFF2445	0.66	+0.2
2,464,605	+		GFF2445	0.66	-1.8
2,464,605	+		GFF2445	0.66	-0.6
2,464,607	-		GFF2445	0.67	-0.2
2,464,613	-		GFF2445	0.67	-0.4
2,464,613	-		GFF2445	0.67	+1.0
2,464,613	-		GFF2445	0.67	+0.6
2,464,613	-		GFF2445	0.67	+0.7
2,464,613	-		GFF2445	0.67	-0.2
2,464,613	-		GFF2445	0.67	+0.0
2,464,647	-		GFF2445	0.70	+0.2
2,464,647	-		GFF2445	0.70	+0.7
2,464,647	-		GFF2445	0.70	+0.0
2,464,649	-		GFF2445	0.70	-0.3
2,464,660	+		GFF2445	0.71	-1.3
2,464,660	+		GFF2445	0.71	-0.9
2,464,660	+		GFF2445	0.71	+0.1
2,464,668	-		GFF2445	0.72	+0.2
2,464,668	-		GFF2445	0.72	-0.1
2,464,687	+		GFF2445	0.74	-0.4
2,464,700	+		GFF2445	0.75	+0.0
2,464,708	-		GFF2445	0.75	+0.7
2,464,719	-		GFF2445	0.76	-0.8
2,464,722	+		GFF2445	0.77	+0.7
2,464,722	+		GFF2445	0.77	-1.2
2,464,722	+		GFF2445	0.77	+0.9
2,464,722	+		GFF2445	0.77	-1.2
2,464,722	+		GFF2445	0.77	+0.5
2,464,722	+		GFF2445	0.77	-1.4
2,464,722	+		GFF2445	0.77	-1.3
2,464,722	+		GFF2445	0.77	-0.6
2,464,722	+		GFF2445	0.77	+0.5
2,464,722	+		GFF2445	0.77	-3.4
2,464,727	+		GFF2445	0.77	-0.2
2,464,727	+		GFF2445	0.77	+0.2
2,464,730	-		GFF2445	0.77	-0.2
2,464,730	-		GFF2445	0.77	-0.7
2,464,730	-		GFF2445	0.77	+0.7
2,464,730	-		GFF2445	0.77	-0.9
2,464,730	-		GFF2445	0.77	+0.2
2,464,730	-		GFF2445	0.77	+0.5
2,464,730	-		GFF2445	0.77	+0.2
2,464,735	-		GFF2445	0.78	+0.7
2,464,739	-		GFF2445	0.78	+0.0
2,464,752	-		GFF2445	0.79	-0.4
2,464,781	-		GFF2445	0.82	+0.1
2,464,794	+		GFF2445	0.83	+0.9
2,464,794	+		GFF2445	0.83	+0.4
2,464,794	+		GFF2445	0.83	+0.5
2,464,802	-		GFF2445	0.84	+0.1
2,464,802	-		GFF2445	0.84	-2.0
2,464,802	-		GFF2445	0.84	-1.5
2,464,804	+		GFF2445	0.84	-1.0
2,464,804	+		GFF2445	0.84	-1.2
2,464,804	+		GFF2445	0.84	-0.3
2,464,818	+		GFF2445	0.85	-0.8
2,464,824	+		GFF2445	0.86	-1.7
2,464,824	+		GFF2445	0.86	-0.0
2,464,829	+		GFF2445	0.86	+0.2
2,464,829	+		GFF2445	0.86	+1.0
2,464,832	-		GFF2445	0.86	-0.9
2,464,838	+		GFF2445	0.87	+1.0
2,464,838	+		GFF2445	0.87	-0.4
2,464,841	-		GFF2445	0.87	+1.1
2,464,844	-		GFF2445	0.87	+0.8
2,464,846	-		GFF2445	0.87	-0.8
2,464,846	-		GFF2445	0.87	-1.9
2,464,846	-		GFF2445	0.87	-1.7
2,464,846	-		GFF2445	0.87	-0.1
2,464,846	-		GFF2445	0.87	+0.1
2,464,846	-		GFF2445	0.87	-1.1
2,464,846	-		GFF2445	0.87	-0.2
2,464,846	-		GFF2445	0.87	-0.2
2,464,846	-		GFF2445	0.87	-1.6
2,464,848	+		GFF2445	0.88	+0.2
2,464,851	-		GFF2445	0.88	-0.7
2,464,882	+				-0.2
2,464,890	-				-0.1
2,464,905	-				+0.3
2,464,905	-				-0.4
2,464,905	-				-0.1
2,464,924	-				-0.9
2,464,962	+				+0.9
2,464,970	-				+0.7
2,464,972	-				-1.3
2,464,975	-				-1.1
2,464,997	-				-1.6
2,465,004	-				-0.6
2,465,017	-				-0.5
2,465,041	+				+1.0
2,465,060	+				-0.9
2,465,060	+				-0.3
2,465,060	+				-0.1
2,465,060	+				-0.2
2,465,068	-				-0.1
2,465,068	-				-0.4
2,465,072	+				-0.3
2,465,077	+				-2.1
2,465,077	+				-0.5
2,465,077	+				-1.4
2,465,077	+				-0.4
2,465,077	+				+0.9
2,465,077	+				-0.6
2,465,077	+				+0.2
2,465,077	+				-0.6
2,465,077	+				-2.1
2,465,077	+				+0.9
2,465,077	+				-0.5
2,465,077	+				-0.7
2,465,077	+				-1.0
2,465,077	+				+0.2
2,465,077	+				-0.3
2,465,077	+				-0.3
2,465,077	+				-0.9
2,465,077	+				-0.4
2,465,077	+				-1.5
2,465,077	+				-0.8
2,465,077	+				-2.0
2,465,077	+				-0.1
2,465,077	+				-0.2
2,465,077	+				-1.2
2,465,077	+				-0.5
2,465,077	+				-0.3
2,465,077	+				+0.2
2,465,077	+				+0.5
2,465,077	+				-0.2
2,465,077	+				+1.6
2,465,077	+				+1.2
2,465,077	+				-0.2
2,465,085	-				-0.7
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2,465,085	-				+1.2
2,465,085	-				-1.3
2,465,085	-				+1.5
2,465,085	-				+1.0
2,465,085	-				-0.3
2,465,085	-				-0.2
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2,465,085	-				-0.0
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2,465,085	-				-0.8
2,465,085	-				+1.4
2,465,085	-				+0.3
2,465,085	-				-1.0
2,465,085	-				-0.5
2,465,085	-				-0.7
2,465,085	-				-0.5
2,465,085	-				-0.2
2,465,085	-				+1.1
2,465,085	-				-1.6
2,465,085	-				-0.4
2,465,085	-				+0.6
2,465,085	-				+0.4
2,465,085	-				+0.1
2,465,085	-				+0.1
2,465,085	-				-0.2
2,465,085	-				-0.8
2,465,138	+				-0.7
2,465,165	-				-0.4
2,465,166	+				+0.9
2,465,198	+				+0.7
2,465,198	+				-1.1
2,465,198	+				-0.3
2,465,201	-				+0.8
2,465,201	-				-0.9
2,465,206	-				-2.8
2,465,206	-				-0.6
2,465,206	-				-0.2
2,465,220	+				-1.0
2,465,220	+				+1.4
2,465,225	+				-0.0
2,465,228	-				+0.9
2,465,228	-				-0.8
2,465,236	+				-0.3
2,465,244	-				-1.9
2,465,249	+				+0.3
2,465,293	-				+0.0
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2,465,305	-				-0.6
2,465,305	-				-0.8
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2,465,318	-				-0.5
2,465,318	-				-0.1
2,465,318	-				+0.9
2,465,318	-				+0.5
2,465,339	+				-1.1