Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF240 and GFF241 are separated by 65 nucleotides GFF241 and GFF242 are separated by 142 nucleotides GFF242 and GFF243 overlap by 8 nucleotides GFF243 and GFF244 overlap by 4 nucleotides
GFF240 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 244,408 to 245,916
GFF240
GFF241 - hypothetical protein, at 245,982 to 246,404
GFF241
GFF242 - Ribonuclease T2 family protein, at 246,547 to 247,254
GFF242
GFF243 - Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19), at 247,247 to 248,101
GFF243
GFF244 - Prolyl endopeptidase (EC 3.4.21.26), at 248,098 to 250,224
GFF244
Position (kb) 246
247
248 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 245.552 kb on + strand, within GFF240 at 245.561 kb on + strand, within GFF240 at 245.569 kb on - strand, within GFF240 at 245.608 kb on - strand, within GFF240 at 245.614 kb on - strand, within GFF240 at 245.632 kb on + strand, within GFF240 at 245.632 kb on + strand, within GFF240 at 245.632 kb on + strand, within GFF240 at 245.632 kb on + strand, within GFF240 at 245.632 kb on + strand, within GFF240 at 245.632 kb on + strand, within GFF240 at 245.632 kb on + strand, within GFF240 at 245.632 kb on + strand, within GFF240 at 245.640 kb on - strand, within GFF240 at 245.640 kb on - strand, within GFF240 at 245.640 kb on - strand, within GFF240 at 245.640 kb on - strand, within GFF240 at 245.640 kb on - strand, within GFF240 at 245.640 kb on - strand, within GFF240 at 245.645 kb on - strand, within GFF240 at 245.647 kb on + strand, within GFF240 at 245.649 kb on + strand, within GFF240 at 245.691 kb on - strand, within GFF240 at 245.700 kb on + strand, within GFF240 at 245.708 kb on - strand, within GFF240 at 245.720 kb on + strand, within GFF240 at 245.725 kb on + strand, within GFF240 at 245.730 kb on + strand, within GFF240 at 245.730 kb on + strand, within GFF240 at 245.730 kb on + strand, within GFF240 at 245.745 kb on + strand, within GFF240 at 245.795 kb on - strand at 245.796 kb on - strand at 245.806 kb on - strand at 245.806 kb on - strand at 245.806 kb on - strand at 245.828 kb on - strand at 245.847 kb on + strand at 245.870 kb on - strand at 245.884 kb on + strand at 245.885 kb on + strand at 245.904 kb on - strand at 245.906 kb on + strand at 245.911 kb on + strand at 245.911 kb on + strand at 245.911 kb on + strand at 245.911 kb on + strand at 245.914 kb on - strand at 245.931 kb on - strand at 245.931 kb on - strand at 245.955 kb on - strand at 245.957 kb on + strand at 245.962 kb on + strand at 245.964 kb on + strand at 245.964 kb on + strand at 245.964 kb on + strand at 245.964 kb on + strand at 245.964 kb on + strand at 245.964 kb on + strand at 245.964 kb on + strand at 245.964 kb on + strand at 245.964 kb on + strand at 245.964 kb on + strand at 245.965 kb on - strand at 245.972 kb on - strand at 245.972 kb on - strand at 245.972 kb on - strand at 245.972 kb on - strand at 245.972 kb on - strand at 245.974 kb on + strand at 245.982 kb on - strand at 246.023 kb on - strand at 246.072 kb on - strand, within GFF241 at 246.084 kb on + strand, within GFF241 at 246.084 kb on + strand, within GFF241 at 246.092 kb on - strand, within GFF241 at 246.092 kb on - strand, within GFF241 at 246.107 kb on + strand, within GFF241 at 246.129 kb on + strand, within GFF241 at 246.137 kb on - strand, within GFF241 at 246.137 kb on - strand, within GFF241 at 246.137 kb on - strand, within GFF241 at 246.143 kb on + strand, within GFF241 at 246.151 kb on - strand, within GFF241 at 246.156 kb on - strand, within GFF241 at 246.162 kb on + strand, within GFF241 at 246.193 kb on + strand, within GFF241 at 246.193 kb on + strand, within GFF241 at 246.217 kb on + strand, within GFF241 at 246.217 kb on + strand, within GFF241 at 246.253 kb on + strand, within GFF241 at 246.278 kb on + strand, within GFF241 at 246.278 kb on + strand, within GFF241 at 246.286 kb on - strand, within GFF241 at 246.360 kb on - strand, within GFF241 at 246.368 kb on - strand at 246.379 kb on + strand at 246.403 kb on + strand at 246.411 kb on - strand at 246.419 kb on - strand at 246.457 kb on + strand at 246.457 kb on + strand at 246.457 kb on + strand at 246.465 kb on - strand at 246.465 kb on - strand at 246.465 kb on - strand at 246.467 kb on + strand at 246.467 kb on + strand at 246.475 kb on - strand at 246.477 kb on + strand at 246.485 kb on - strand at 246.485 kb on - strand at 246.491 kb on + strand at 246.492 kb on - strand at 246.499 kb on - strand at 246.511 kb on - strand at 246.518 kb on - strand at 246.551 kb on - strand at 246.551 kb on - strand at 246.552 kb on - strand at 246.553 kb on + strand at 246.563 kb on + strand at 246.563 kb on + strand at 246.581 kb on - strand at 246.595 kb on + strand at 246.635 kb on + strand, within GFF242 at 246.635 kb on + strand, within GFF242 at 246.640 kb on + strand, within GFF242 at 246.640 kb on + strand, within GFF242 at 246.640 kb on + strand, within GFF242 at 246.640 kb on + strand, within GFF242 at 246.641 kb on - strand, within GFF242 at 246.643 kb on - strand, within GFF242 at 246.648 kb on - strand, within GFF242 at 246.648 kb on - strand, within GFF242 at 246.648 kb on - strand, within GFF242 at 246.648 kb on - strand, within GFF242 at 246.655 kb on - strand, within GFF242 at 246.665 kb on - strand, within GFF242 at 246.704 kb on + strand, within GFF242 at 246.704 kb on + strand, within GFF242 at 246.704 kb on + strand, within GFF242 at 246.704 kb on + strand, within GFF242 at 246.706 kb on - strand, within GFF242 at 246.709 kb on + strand, within GFF242 at 246.709 kb on + strand, within GFF242 at 246.712 kb on - strand, within GFF242 at 246.712 kb on - strand, within GFF242 at 246.712 kb on - strand, within GFF242 at 246.712 kb on - strand, within GFF242 at 246.712 kb on - strand, within GFF242 at 246.719 kb on + strand, within GFF242 at 246.727 kb on - strand, within GFF242 at 246.731 kb on + strand, within GFF242 at 246.731 kb on + strand, within GFF242 at 246.739 kb on - strand, within GFF242 at 246.777 kb on + strand, within GFF242 at 246.777 kb on + strand, within GFF242 at 246.785 kb on - strand, within GFF242 at 246.790 kb on - strand, within GFF242 at 246.792 kb on + strand, within GFF242 at 246.792 kb on + strand, within GFF242 at 246.795 kb on - strand, within GFF242 at 246.800 kb on - strand, within GFF242 at 246.800 kb on - strand, within GFF242 at 246.802 kb on - strand, within GFF242 at 246.805 kb on - strand, within GFF242 at 246.843 kb on + strand, within GFF242 at 246.858 kb on + strand, within GFF242 at 246.865 kb on - strand, within GFF242 at 246.865 kb on - strand, within GFF242 at 246.874 kb on - strand, within GFF242 at 246.885 kb on + strand, within GFF242 at 246.893 kb on - strand, within GFF242 at 246.899 kb on + strand, within GFF242 at 246.904 kb on - strand, within GFF242 at 246.923 kb on - strand, within GFF242 at 246.924 kb on - strand, within GFF242 at 246.962 kb on - strand, within GFF242 at 246.978 kb on - strand, within GFF242 at 246.983 kb on + strand, within GFF242 at 246.999 kb on + strand, within GFF242 at 246.999 kb on + strand, within GFF242 at 247.030 kb on + strand, within GFF242 at 247.032 kb on + strand, within GFF242 at 247.077 kb on + strand, within GFF242 at 247.087 kb on - strand, within GFF242 at 247.130 kb on - strand, within GFF242 at 247.131 kb on + strand, within GFF242 at 247.131 kb on + strand, within GFF242 at 247.137 kb on + strand, within GFF242 at 247.169 kb on + strand, within GFF242 at 247.187 kb on + strand at 247.187 kb on + strand at 247.193 kb on + strand at 247.193 kb on + strand at 247.197 kb on + strand at 247.198 kb on + strand at 247.208 kb on + strand at 247.222 kb on - strand at 247.237 kb on - strand at 247.252 kb on - strand at 247.257 kb on + strand at 247.257 kb on + strand at 247.265 kb on - strand at 247.274 kb on + strand at 247.284 kb on + strand at 247.285 kb on + strand at 247.321 kb on - strand at 247.321 kb on - strand at 247.359 kb on - strand, within GFF243 at 247.388 kb on - strand, within GFF243 at 247.392 kb on + strand, within GFF243 at 247.392 kb on + strand, within GFF243 at 247.402 kb on + strand, within GFF243 at 247.402 kb on + strand, within GFF243 at 247.405 kb on - strand, within GFF243 at 247.405 kb on - strand, within GFF243 at 247.410 kb on - strand, within GFF243 at 247.410 kb on - strand, within GFF243 at 247.410 kb on - strand, within GFF243 at 247.410 kb on - strand, within GFF243 at 247.428 kb on - strand, within GFF243 at 247.428 kb on - strand, within GFF243 at 247.428 kb on - strand, within GFF243 at 247.476 kb on + strand, within GFF243 at 247.476 kb on + strand, within GFF243 at 247.494 kb on - strand, within GFF243 at 247.506 kb on + strand, within GFF243 at 247.511 kb on + strand, within GFF243 at 247.511 kb on + strand, within GFF243 at 247.592 kb on - strand, within GFF243 at 247.612 kb on - strand, within GFF243 at 247.612 kb on - strand, within GFF243 at 247.669 kb on + strand, within GFF243 at 247.680 kb on + strand, within GFF243 at 247.715 kb on - strand, within GFF243 at 247.717 kb on + strand, within GFF243 at 247.718 kb on - strand, within GFF243 at 247.720 kb on - strand, within GFF243 at 247.736 kb on - strand, within GFF243 at 247.758 kb on + strand, within GFF243 at 247.771 kb on - strand, within GFF243 at 247.771 kb on - strand, within GFF243 at 247.773 kb on + strand, within GFF243 at 247.776 kb on - strand, within GFF243 at 247.781 kb on - strand, within GFF243 at 247.782 kb on + strand, within GFF243 at 247.783 kb on - strand, within GFF243 at 247.794 kb on + strand, within GFF243 at 247.802 kb on - strand, within GFF243 at 247.802 kb on - strand, within GFF243 at 247.804 kb on - strand, within GFF243 at 247.806 kb on + strand, within GFF243 at 247.814 kb on - strand, within GFF243 at 247.818 kb on + strand, within GFF243 at 247.860 kb on + strand, within GFF243 at 247.879 kb on - strand, within GFF243 at 247.885 kb on + strand, within GFF243 at 247.915 kb on - strand, within GFF243 at 247.925 kb on + strand, within GFF243 at 247.948 kb on + strand, within GFF243 at 247.958 kb on + strand, within GFF243 at 247.961 kb on - strand, within GFF243 at 247.978 kb on - strand, within GFF243 at 247.986 kb on + strand, within GFF243 at 247.994 kb on - strand, within GFF243 at 248.019 kb on - strand at 248.020 kb on + strand at 248.034 kb on - strand at 248.044 kb on + strand at 248.063 kb on - strand at 248.068 kb on + strand at 248.076 kb on - strand at 248.081 kb on - strand at 248.081 kb on - strand at 248.107 kb on - strand at 248.125 kb on + strand at 248.126 kb on - strand at 248.134 kb on + strand at 248.142 kb on + strand at 248.143 kb on - strand at 248.153 kb on - strand at 248.172 kb on + strand at 248.172 kb on + strand at 248.188 kb on + strand at 248.222 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 245,552 + GFF240 0.76 -0.3 245,561 + GFF240 0.76 +0.4 245,569 - GFF240 0.77 +1.4 245,608 - GFF240 0.80 -0.9 245,614 - GFF240 0.80 -1.3 245,632 + GFF240 0.81 -2.2 245,632 + GFF240 0.81 +0.1 245,632 + GFF240 0.81 -1.5 245,632 + GFF240 0.81 -0.8 245,632 + GFF240 0.81 +0.9 245,632 + GFF240 0.81 +0.2 245,632 + GFF240 0.81 +0.0 245,632 + GFF240 0.81 +1.4 245,640 - GFF240 0.82 +0.4 245,640 - GFF240 0.82 -1.2 245,640 - GFF240 0.82 +1.2 245,640 - GFF240 0.82 -0.2 245,640 - GFF240 0.82 +0.1 245,640 - GFF240 0.82 -1.8 245,645 - GFF240 0.82 -0.4 245,647 + GFF240 0.82 +1.1 245,649 + GFF240 0.82 -0.5 245,691 - GFF240 0.85 +0.5 245,700 + GFF240 0.86 +1.1 245,708 - GFF240 0.86 +0.1 245,720 + GFF240 0.87 +1.2 245,725 + GFF240 0.87 +0.4 245,730 + GFF240 0.88 -2.0 245,730 + GFF240 0.88 +1.7 245,730 + GFF240 0.88 -1.1 245,745 + GFF240 0.89 +0.3 245,795 - -2.0 245,796 - +0.1 245,806 - -1.9 245,806 - -1.6 245,806 - +0.4 245,828 - +1.1 245,847 + +0.6 245,870 - +0.4 245,884 + -0.7 245,885 + -0.5 245,904 - -0.3 245,906 + +0.8 245,911 + +0.4 245,911 + -0.4 245,911 + +0.3 245,911 + +0.2 245,914 - -1.8 245,931 - -1.9 245,931 - -0.1 245,955 - -1.9 245,957 + +0.1 245,962 + -2.4 245,964 + -0.5 245,964 + -1.0 245,964 + +0.4 245,964 + -1.2 245,964 + -1.4 245,964 + +0.5 245,964 + +0.1 245,964 + +0.2 245,964 + +1.3 245,964 + -0.4 245,965 - -2.3 245,972 - -1.0 245,972 - -0.9 245,972 - -0.7 245,972 - -0.3 245,972 - +0.1 245,974 + -1.5 245,982 - +0.1 246,023 - -0.5 246,072 - GFF241 0.21 -0.7 246,084 + GFF241 0.24 -0.3 246,084 + GFF241 0.24 -1.5 246,092 - GFF241 0.26 -0.4 246,092 - GFF241 0.26 -0.4 246,107 + GFF241 0.30 +0.7 246,129 + GFF241 0.35 +0.9 246,137 - GFF241 0.37 +0.4 246,137 - GFF241 0.37 +0.4 246,137 - GFF241 0.37 -2.1 246,143 + GFF241 0.38 -1.9 246,151 - GFF241 0.40 +0.4 246,156 - GFF241 0.41 +0.7 246,162 + GFF241 0.43 -0.5 246,193 + GFF241 0.50 -1.3 246,193 + GFF241 0.50 -0.9 246,217 + GFF241 0.56 -2.1 246,217 + GFF241 0.56 -0.4 246,253 + GFF241 0.64 -1.8 246,278 + GFF241 0.70 -0.7 246,278 + GFF241 0.70 -1.0 246,286 - GFF241 0.72 +0.2 246,360 - GFF241 0.89 -0.9 246,368 - -1.8 246,379 + +1.0 246,403 + -0.4 246,411 - -0.5 246,419 - +0.6 246,457 + -2.2 246,457 + -0.5 246,457 + +0.7 246,465 - -0.2 246,465 - +0.7 246,465 - -0.7 246,467 + -0.7 246,467 + -0.9 246,475 - -1.8 246,477 + +0.3 246,485 - +0.7 246,485 - +0.8 246,491 + -1.3 246,492 - +0.4 246,499 - +0.4 246,511 - -0.2 246,518 - -0.2 246,551 - +1.5 246,551 - +0.8 246,552 - -0.8 246,553 + -1.1 246,563 + +0.6 246,563 + +0.9 246,581 - -0.7 246,595 + +0.4 246,635 + GFF242 0.12 -2.7 246,635 + GFF242 0.12 -1.1 246,640 + GFF242 0.13 -1.6 246,640 + GFF242 0.13 -0.1 246,640 + GFF242 0.13 -0.6 246,640 + GFF242 0.13 +0.1 246,641 - GFF242 0.13 -1.7 246,643 - GFF242 0.14 -2.6 246,648 - GFF242 0.14 -1.2 246,648 - GFF242 0.14 -0.5 246,648 - GFF242 0.14 +0.0 246,648 - GFF242 0.14 +0.0 246,655 - GFF242 0.15 +0.5 246,665 - GFF242 0.17 -1.7 246,704 + GFF242 0.22 +0.5 246,704 + GFF242 0.22 -0.3 246,704 + GFF242 0.22 -1.3 246,704 + GFF242 0.22 -0.2 246,706 - GFF242 0.22 +1.3 246,709 + GFF242 0.23 -0.3 246,709 + GFF242 0.23 -0.0 246,712 - GFF242 0.23 +0.4 246,712 - GFF242 0.23 -2.7 246,712 - GFF242 0.23 -0.7 246,712 - GFF242 0.23 -1.8 246,712 - GFF242 0.23 +0.2 246,719 + GFF242 0.24 +1.7 246,727 - GFF242 0.25 -0.8 246,731 + GFF242 0.26 +0.6 246,731 + GFF242 0.26 -1.0 246,739 - GFF242 0.27 +0.1 246,777 + GFF242 0.32 -0.7 246,777 + GFF242 0.32 +0.2 246,785 - GFF242 0.34 +0.1 246,790 - GFF242 0.34 -0.5 246,792 + GFF242 0.35 -0.9 246,792 + GFF242 0.35 +0.2 246,795 - GFF242 0.35 -1.7 246,800 - GFF242 0.36 -1.6 246,800 - GFF242 0.36 +0.8 246,802 - GFF242 0.36 -1.3 246,805 - GFF242 0.36 -0.1 246,843 + GFF242 0.42 +0.2 246,858 + GFF242 0.44 +1.0 246,865 - GFF242 0.45 +0.2 246,865 - GFF242 0.45 -0.3 246,874 - GFF242 0.46 +1.2 246,885 + GFF242 0.48 +0.2 246,893 - GFF242 0.49 -0.2 246,899 + GFF242 0.50 -0.1 246,904 - GFF242 0.50 -0.1 246,923 - GFF242 0.53 -2.5 246,924 - GFF242 0.53 -1.0 246,962 - GFF242 0.59 -0.6 246,978 - GFF242 0.61 -0.3 246,983 + GFF242 0.62 -0.3 246,999 + GFF242 0.64 -0.8 246,999 + GFF242 0.64 +0.0 247,030 + GFF242 0.68 +0.2 247,032 + GFF242 0.69 -1.2 247,077 + GFF242 0.75 -0.8 247,087 - GFF242 0.76 -1.9 247,130 - GFF242 0.82 +0.5 247,131 + GFF242 0.82 +0.3 247,131 + GFF242 0.82 +0.3 247,137 + GFF242 0.83 +0.7 247,169 + GFF242 0.88 +0.4 247,187 + -1.0 247,187 + +0.3 247,193 + -0.7 247,193 + +0.1 247,197 + -1.3 247,198 + -0.2 247,208 + +0.3 247,222 - -0.4 247,237 - +0.0 247,252 - -0.2 247,257 + +0.5 247,257 + -2.3 247,265 - -0.5 247,274 + -1.6 247,284 + +0.0 247,285 + -1.9 247,321 - -2.3 247,321 - -0.5 247,359 - GFF243 0.13 -0.9 247,388 - GFF243 0.16 -1.7 247,392 + GFF243 0.17 -2.3 247,392 + GFF243 0.17 -1.0 247,402 + GFF243 0.18 -1.3 247,402 + GFF243 0.18 +0.7 247,405 - GFF243 0.18 -1.3 247,405 - GFF243 0.18 -0.8 247,410 - GFF243 0.19 -1.3 247,410 - GFF243 0.19 -0.2 247,410 - GFF243 0.19 -1.8 247,410 - GFF243 0.19 -0.8 247,428 - GFF243 0.21 -2.2 247,428 - GFF243 0.21 -2.0 247,428 - GFF243 0.21 -2.1 247,476 + GFF243 0.27 +0.2 247,476 + GFF243 0.27 +0.1 247,494 - GFF243 0.29 -1.2 247,506 + GFF243 0.30 -1.3 247,511 + GFF243 0.31 -2.0 247,511 + GFF243 0.31 -1.3 247,592 - GFF243 0.40 -0.6 247,612 - GFF243 0.43 -2.0 247,612 - GFF243 0.43 -0.3 247,669 + GFF243 0.49 -1.5 247,680 + GFF243 0.51 +0.2 247,715 - GFF243 0.55 -1.8 247,717 + GFF243 0.55 -2.3 247,718 - GFF243 0.55 -1.5 247,720 - GFF243 0.55 -0.5 247,736 - GFF243 0.57 -1.3 247,758 + GFF243 0.60 -2.1 247,771 - GFF243 0.61 -2.2 247,771 - GFF243 0.61 -1.9 247,773 + GFF243 0.62 -1.1 247,776 - GFF243 0.62 -1.8 247,781 - GFF243 0.62 -0.1 247,782 + GFF243 0.63 -0.6 247,783 - GFF243 0.63 +0.8 247,794 + GFF243 0.64 -1.8 247,802 - GFF243 0.65 -0.3 247,802 - GFF243 0.65 -1.3 247,804 - GFF243 0.65 -1.3 247,806 + GFF243 0.65 -1.5 247,814 - GFF243 0.66 +0.5 247,818 + GFF243 0.67 -1.5 247,860 + GFF243 0.72 -1.8 247,879 - GFF243 0.74 -2.1 247,885 + GFF243 0.75 -0.6 247,915 - GFF243 0.78 -1.6 247,925 + GFF243 0.79 -0.5 247,948 + GFF243 0.82 -2.5 247,958 + GFF243 0.83 -2.0 247,961 - GFF243 0.84 -3.0 247,978 - GFF243 0.85 -0.8 247,986 + GFF243 0.86 -0.5 247,994 - GFF243 0.87 -0.5 248,019 - -0.6 248,020 + -0.5 248,034 - -0.7 248,044 + -2.3 248,063 - -1.8 248,068 + -0.7 248,076 - +0.4 248,081 - -1.5 248,081 - +0.5 248,107 - +0.8 248,125 + +0.0 248,126 - -0.1 248,134 + -0.5 248,142 + -0.6 248,143 - -0.9 248,153 - +0.1 248,172 + -0.5 248,172 + -1.1 248,188 + -1.2 248,222 + -0.8
Or see this region's nucleotide sequence