Strain Fitness in Sphingobium sp. HT1-2 around GFF2408

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,427,652	-		GFF2406	0.87	-0.9
2,427,652	-		GFF2406	0.87	+1.6
2,427,663	+		GFF2406	0.88	-0.2
2,427,663	+		GFF2406	0.88	+1.1
2,427,663	+		GFF2406	0.88	-0.8
2,427,676	+		GFF2406	0.89	+0.0
2,427,684	-		GFF2406	0.89	-0.6
2,427,691	-		GFF2406	0.90	-1.0
2,427,722	+				+0.6
2,427,723	-				-0.6
2,427,742	+				+0.4
2,427,742	+				-0.7
2,427,742	+				-3.4
2,427,742	+				-1.2
2,427,742	+				-0.7
2,427,742	+				-0.4
2,427,743	-				+0.8
2,427,745	-				-1.8
2,427,745	-				-0.4
2,427,750	-				-0.8
2,427,750	-				-2.3
2,427,750	-				-0.1
2,427,771	+				-2.5
2,427,779	+				+0.3
2,427,779	-				-0.9
2,427,779	-				-0.3
2,427,779	-				+0.7
2,427,779	-				+0.2
2,427,779	-				-1.3
2,427,788	-				-1.6
2,427,810	+				-2.0
2,427,816	+				+0.1
2,427,816	-				-1.6
2,427,818	-				-0.2
2,427,823	-				+0.3
2,427,825	-				-0.4
2,427,858	+				+0.2
2,427,866	-				-0.3
2,427,866	-				-3.1
2,427,866	-				+0.3
2,427,866	-				+0.2
2,427,884	+				+0.4
2,427,892	-				-0.3
2,427,895	+				-0.7
2,427,909	-		GFF2407	0.11	-0.0
2,427,914	+		GFF2407	0.12	-0.1
2,427,914	+		GFF2407	0.12	+1.0
2,427,914	+		GFF2407	0.12	-0.5
2,427,916	+		GFF2407	0.12	-0.5
2,427,919	+		GFF2407	0.13	-0.7
2,427,924	-		GFF2407	0.13	-1.3
2,427,949	-		GFF2407	0.17	-1.4
2,427,950	+		GFF2407	0.17	+1.0
2,427,975	+		GFF2407	0.20	-0.9
2,427,991	-		GFF2407	0.22	+0.7
2,427,992	+		GFF2407	0.22	-0.6
2,428,005	+		GFF2407	0.24	-1.8
2,428,019	+		GFF2407	0.25	-0.2
2,428,038	+		GFF2407	0.28	+0.2
2,428,078	+		GFF2407	0.33	-1.6
2,428,078	+		GFF2407	0.33	+0.2
2,428,086	-		GFF2407	0.34	+0.1
2,428,123	+		GFF2407	0.39	-0.9
2,428,133	+		GFF2407	0.40	+1.0
2,428,133	-		GFF2407	0.40	-0.3
2,428,138	+		GFF2407	0.41	-0.6
2,428,138	+		GFF2407	0.41	-1.7
2,428,138	+		GFF2407	0.41	-1.3
2,428,151	-		GFF2407	0.42	+0.4
2,428,151	-		GFF2407	0.42	+0.7
2,428,156	+		GFF2407	0.43	-1.2
2,428,156	-		GFF2407	0.43	+0.0
2,428,163	+		GFF2407	0.44	-1.2
2,428,172	-		GFF2407	0.45	-0.5
2,428,180	+		GFF2407	0.46	-0.9
2,428,188	-		GFF2407	0.47	+0.7
2,428,188	-		GFF2407	0.47	-1.0
2,428,193	-		GFF2407	0.48	+0.3
2,428,223	+		GFF2407	0.51	+0.9
2,428,230	+		GFF2407	0.52	+0.8
2,428,230	+		GFF2407	0.52	-0.8
2,428,243	+		GFF2407	0.54	-0.7
2,428,243	+		GFF2407	0.54	+0.4
2,428,251	-		GFF2407	0.55	+0.3
2,428,253	+		GFF2407	0.55	+0.5
2,428,253	+		GFF2407	0.55	+0.1
2,428,253	+		GFF2407	0.55	+0.6
2,428,253	+		GFF2407	0.55	+0.5
2,428,253	+		GFF2407	0.55	-0.1
2,428,261	-		GFF2407	0.56	-0.4
2,428,261	-		GFF2407	0.56	+0.8
2,428,266	+		GFF2407	0.57	+1.0
2,428,291	+		GFF2407	0.60	+0.0
2,428,291	+		GFF2407	0.60	+1.4
2,428,291	+		GFF2407	0.60	-2.1
2,428,299	-		GFF2407	0.61	-1.5
2,428,312	+		GFF2407	0.63	-0.2
2,428,312	+		GFF2407	0.63	-0.3
2,428,341	-		GFF2407	0.66	+0.2
2,428,344	+		GFF2407	0.67	+0.1
2,428,352	-		GFF2407	0.68	-0.4
2,428,352	-		GFF2407	0.68	-2.0
2,428,352	-		GFF2407	0.68	-1.1
2,428,352	-		GFF2407	0.68	-1.0
2,428,352	-		GFF2407	0.68	+0.2
2,428,369	+		GFF2407	0.70	+0.2
2,428,370	-		GFF2407	0.70	+1.5
2,428,379	+		GFF2407	0.71	-0.5
2,428,379	+		GFF2407	0.71	+1.2
2,428,382	-		GFF2407	0.72	-1.2
2,428,387	-		GFF2407	0.72	+0.3
2,428,387	-		GFF2407	0.72	-0.8
2,428,387	-		GFF2407	0.72	+0.4
2,428,387	-		GFF2407	0.72	-0.6
2,428,387	-		GFF2407	0.72	-0.5
2,428,387	-		GFF2407	0.72	-0.8
2,428,397	-		GFF2407	0.74	+0.2
2,428,398	+		GFF2407	0.74	-1.3
2,428,400	+		GFF2407	0.74	-1.2
2,428,406	-		GFF2407	0.75	-1.8
2,428,412	-		GFF2407	0.75	+1.0
2,428,416	+		GFF2407	0.76	-0.6
2,428,421	+		GFF2407	0.77	-1.6
2,428,424	-		GFF2407	0.77	+0.0
2,428,460	+		GFF2407	0.82	+0.0
2,428,460	+		GFF2407	0.82	-1.2
2,428,467	-		GFF2407	0.82	+0.7
2,428,468	-		GFF2407	0.83	-0.3
2,428,478	+		GFF2407	0.84	-0.7
2,428,478	+		GFF2407	0.84	+0.3
2,428,486	-		GFF2407	0.85	-1.5
2,428,512	-		GFF2407	0.88	-0.4
2,428,528	+				-0.6
2,428,549	+				+0.2
2,428,562	+				+0.8
2,428,562	+				-0.5
2,428,589	-				-0.9
2,428,599	+				+0.5
2,428,599	+				+0.4
2,428,599	+				+0.5
2,428,599	+				+0.3
2,428,599	+				+0.4
2,428,607	-				+0.5
2,428,607	-				-2.2
2,428,607	-				+0.3
2,428,609	+				+0.4
2,428,611	+				+0.9
2,428,633	+				-2.1
2,428,641	-				-0.2
2,428,662	-				-0.7
2,428,673	-				-0.1
2,428,678	+				-1.2
2,428,689	+				-0.5
2,428,706	+				+1.1
2,428,706	+				-0.4
2,428,710	+				+0.1
2,428,712	-				-0.9
2,428,718	-				+0.1
2,428,732	-				-0.6
2,428,735	+				-2.5
2,428,743	-				-0.7
2,428,745	+				-0.3
2,428,800	+		GFF2408	0.12	-1.3
2,428,819	+		GFF2408	0.14	-0.3
2,428,819	+		GFF2408	0.14	-1.3
2,428,819	+		GFF2408	0.14	+0.3
2,428,819	+		GFF2408	0.14	-0.5
2,428,827	-		GFF2408	0.14	-0.5
2,428,827	-		GFF2408	0.14	-0.5
2,428,827	-		GFF2408	0.14	-0.4
2,428,827	-		GFF2408	0.14	+0.1
2,428,827	-		GFF2408	0.14	-0.3
2,428,827	-		GFF2408	0.14	-3.1
2,428,853	+		GFF2408	0.16	-0.9
2,428,853	+		GFF2408	0.16	+0.0
2,428,862	+		GFF2408	0.17	-0.8
2,428,865	+		GFF2408	0.17	-1.6
2,428,916	+		GFF2408	0.21	-0.1
2,428,932	+		GFF2408	0.23	-1.5
2,428,955	+		GFF2408	0.24	+0.0
2,428,971	+		GFF2408	0.26	-0.6
2,428,974	-		GFF2408	0.26	-2.5
2,428,981	-		GFF2408	0.27	-0.2
2,428,981	-		GFF2408	0.27	+0.1
2,428,985	+		GFF2408	0.27	-0.8
2,429,009	+		GFF2408	0.29	-0.7
2,429,011	+		GFF2408	0.29	+1.0
2,429,011	+		GFF2408	0.29	+0.0
2,429,011	+		GFF2408	0.29	-1.1
2,429,019	-		GFF2408	0.30	-1.8
2,429,019	-		GFF2408	0.30	-2.1
2,429,019	-		GFF2408	0.30	-0.6
2,429,019	-		GFF2408	0.30	+0.7
2,429,019	-		GFF2408	0.30	-1.4
2,429,021	+		GFF2408	0.30	+1.1
2,429,021	+		GFF2408	0.30	+0.4
2,429,021	+		GFF2408	0.30	-0.3
2,429,021	+		GFF2408	0.30	-1.9
2,429,029	+		GFF2408	0.30	+0.4
2,429,029	-		GFF2408	0.30	+0.6
2,429,029	-		GFF2408	0.30	-0.5
2,429,029	-		GFF2408	0.30	-1.0
2,429,034	+		GFF2408	0.31	-1.1
2,429,042	-		GFF2408	0.31	-0.6
2,429,047	-		GFF2408	0.32	+1.2
2,429,049	-		GFF2408	0.32	+0.3
2,429,069	+		GFF2408	0.34	-1.2
2,429,069	+		GFF2408	0.34	-0.4
2,429,069	+		GFF2408	0.34	-2.2
2,429,069	+		GFF2408	0.34	+0.6
2,429,069	+		GFF2408	0.34	-0.2
2,429,077	-		GFF2408	0.34	-1.4
2,429,077	-		GFF2408	0.34	-1.7
2,429,077	-		GFF2408	0.34	+0.8
2,429,121	-		GFF2408	0.38	+0.1
2,429,132	+		GFF2408	0.39	-0.8
2,429,132	+		GFF2408	0.39	-2.5
2,429,133	+		GFF2408	0.39	-0.3
2,429,133	+		GFF2408	0.39	+0.0
2,429,133	+		GFF2408	0.39	-2.1
2,429,140	-		GFF2408	0.39	-1.2
2,429,140	-		GFF2408	0.39	-0.2
2,429,141	-		GFF2408	0.39	-1.3
2,429,147	-		GFF2408	0.40	-0.0
2,429,147	-		GFF2408	0.40	-0.3
2,429,169	-		GFF2408	0.42	-0.7
2,429,198	-		GFF2408	0.44	-0.5
2,429,201	-		GFF2408	0.44	-0.1
2,429,205	+		GFF2408	0.45	-0.7
2,429,211	+		GFF2408	0.45	-0.8
2,429,215	+		GFF2408	0.45	+1.1
2,429,219	-		GFF2408	0.46	-0.6
2,429,220	+		GFF2408	0.46	-1.0
2,429,220	+		GFF2408	0.46	+0.1
2,429,246	+		GFF2408	0.48	+0.2
2,429,246	+		GFF2408	0.48	-2.4
2,429,246	+		GFF2408	0.48	-0.7
2,429,262	+		GFF2408	0.49	-1.2
2,429,280	+		GFF2408	0.51	+0.6
2,429,288	-		GFF2408	0.51	-0.7
2,429,292	+		GFF2408	0.52	-1.2
2,429,300	-		GFF2408	0.52	-0.2
2,429,300	-		GFF2408	0.52	-1.6
2,429,300	-		GFF2408	0.52	-1.1
2,429,318	+		GFF2408	0.54	-0.3
2,429,318	+		GFF2408	0.54	-1.0
2,429,319	+		GFF2408	0.54	+0.3
2,429,326	-		GFF2408	0.54	+0.1
2,429,326	-		GFF2408	0.54	+0.3
2,429,326	-		GFF2408	0.54	-0.4
2,429,326	-		GFF2408	0.54	+0.2
2,429,326	-		GFF2408	0.54	-0.8
2,429,327	-		GFF2408	0.54	+0.1
2,429,334	-		GFF2408	0.55	+1.1
2,429,356	+		GFF2408	0.57	-0.1
2,429,357	-		GFF2408	0.57	-0.3
2,429,369	+		GFF2408	0.58	-0.9
2,429,377	-		GFF2408	0.58	-0.6
2,429,377	-		GFF2408	0.58	-1.4
2,429,388	+		GFF2408	0.59	-1.2
2,429,441	+		GFF2408	0.64	+0.3
2,429,458	+		GFF2408	0.65	+0.4
2,429,466	-		GFF2408	0.66	-1.2
2,429,466	-		GFF2408	0.66	-0.8
2,429,466	-		GFF2408	0.66	+0.4
2,429,488	+		GFF2408	0.67	+0.7
2,429,488	+		GFF2408	0.67	-0.5
2,429,488	+		GFF2408	0.67	-0.9
2,429,490	-		GFF2408	0.67	-1.6
2,429,496	-		GFF2408	0.68	+1.1
2,429,511	-		GFF2408	0.69	-1.0
2,429,511	-		GFF2408	0.69	-1.3
2,429,522	+		GFF2408	0.70	-0.2
2,429,532	+		GFF2408	0.71	-0.3
2,429,537	+		GFF2408	0.71	-0.3
2,429,537	+		GFF2408	0.71	-0.3
2,429,537	+		GFF2408	0.71	-2.6
2,429,537	+		GFF2408	0.71	-2.9
2,429,537	+		GFF2408	0.71	-0.7
2,429,537	+		GFF2408	0.71	+0.4
2,429,537	+		GFF2408	0.71	-1.2
2,429,537	+		GFF2408	0.71	+0.9
2,429,537	+		GFF2408	0.71	-0.0
2,429,537	+		GFF2408	0.71	-0.4
2,429,537	+		GFF2408	0.71	-0.8
2,429,537	+		GFF2408	0.71	-0.2
2,429,537	+		GFF2408	0.71	+0.2
2,429,537	+		GFF2408	0.71	-0.6
2,429,537	+		GFF2408	0.71	+0.6
2,429,537	+		GFF2408	0.71	-1.8
2,429,537	+		GFF2408	0.71	-0.8
2,429,537	+		GFF2408	0.71	-0.1
2,429,537	+		GFF2408	0.71	+0.9
2,429,537	+		GFF2408	0.71	-1.2
2,429,537	+		GFF2408	0.71	+0.2
2,429,537	+		GFF2408	0.71	-1.8
2,429,540	-		GFF2408	0.71	-1.0
2,429,540	-		GFF2408	0.71	+0.4
2,429,540	-		GFF2408	0.71	-0.3
2,429,542	+		GFF2408	0.72	-0.5
2,429,542	+		GFF2408	0.72	+0.0
2,429,545	-		GFF2408	0.72	-0.2
2,429,545	-		GFF2408	0.72	-0.7
2,429,545	-		GFF2408	0.72	-2.2
2,429,545	-		GFF2408	0.72	-0.5
2,429,545	-		GFF2408	0.72	-0.2
2,429,545	-		GFF2408	0.72	+0.4
2,429,545	-		GFF2408	0.72	-1.0
2,429,545	-		GFF2408	0.72	-0.2
2,429,545	-		GFF2408	0.72	-0.3
2,429,545	-		GFF2408	0.72	-0.6
2,429,545	-		GFF2408	0.72	+0.4
2,429,545	-		GFF2408	0.72	-2.0
2,429,545	-		GFF2408	0.72	-0.5
2,429,545	-		GFF2408	0.72	+0.1
2,429,545	-		GFF2408	0.72	+0.0
2,429,545	-		GFF2408	0.72	+0.2
2,429,550	+		GFF2408	0.72	-0.4
2,429,550	-		GFF2408	0.72	+0.2
2,429,551	-		GFF2408	0.72	-0.8
2,429,551	-		GFF2408	0.72	-0.5
2,429,575	+		GFF2408	0.74	+1.1
2,429,603	+		GFF2408	0.77	+0.7
2,429,617	+		GFF2408	0.78	+0.3
2,429,618	+		GFF2408	0.78	+0.6
2,429,665	+		GFF2408	0.82	-0.6
2,429,678	-		GFF2408	0.83	-1.2
2,429,715	+		GFF2408	0.86	-0.6
2,429,715	+		GFF2408	0.86	+0.6
2,429,716	+		GFF2408	0.86	-1.1
2,429,716	+		GFF2408	0.86	-0.8
2,429,716	+		GFF2408	0.86	-0.2
2,429,724	-		GFF2408	0.86	+1.7
2,429,724	-		GFF2408	0.86	-0.6
2,429,724	-		GFF2408	0.86	+1.1
2,429,724	-		GFF2408	0.86	+0.2
2,429,724	-		GFF2408	0.86	+0.5
2,429,724	-		GFF2408	0.86	-0.2
2,429,724	-		GFF2408	0.86	-0.8
2,429,724	-		GFF2408	0.86	-1.6
2,429,724	-		GFF2408	0.86	+0.5
2,429,726	+		GFF2408	0.86	-0.5
2,429,726	+		GFF2408	0.86	-0.7
2,429,726	+		GFF2408	0.86	+0.0
2,429,726	+		GFF2408	0.86	-0.8
2,429,730	+		GFF2408	0.87	+0.5
2,429,734	-		GFF2408	0.87	-1.0
2,429,734	-		GFF2408	0.87	+0.4
2,429,734	-		GFF2408	0.87	-0.1
2,429,789	+				-0.3
2,429,789	+				+0.5
2,429,794	+				-1.4
2,429,795	+				-1.0
2,429,801	+				-0.5
2,429,801	+				-1.6
2,429,801	+				-1.7
2,429,801	+				+0.5
2,429,801	+				+0.5
2,429,802	-				+0.9
2,429,825	+				+0.5
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