Strain Fitness in Sphingobium sp. HT1-2 around GFF2384

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,404,745	-		GFF2382	0.39	-0.6
2,404,752	+		GFF2382	0.40	-2.0
2,404,762	+		GFF2382	0.41	-1.3
2,404,763	+		GFF2382	0.41	-1.0
2,404,802	-		GFF2382	0.46	+1.1
2,404,824	+		GFF2382	0.48	-1.9
2,404,824	+		GFF2382	0.48	+0.1
2,404,824	+		GFF2382	0.48	+1.0
2,404,832	-		GFF2382	0.49	-0.2
2,404,837	-		GFF2382	0.50	+0.3
2,404,899	-		GFF2382	0.57	+1.3
2,404,902	+		GFF2382	0.57	-0.6
2,404,910	-		GFF2382	0.58	-0.6
2,404,910	-		GFF2382	0.58	-1.1
2,404,912	-		GFF2382	0.58	+0.0
2,404,958	+		GFF2382	0.63	+0.9
2,404,958	+		GFF2382	0.63	-0.0
2,404,965	+		GFF2382	0.64	-0.1
2,404,965	+		GFF2382	0.64	-0.1
2,404,965	+		GFF2382	0.64	-0.4
2,405,016	+		GFF2382	0.70	+1.1
2,405,016	+		GFF2382	0.70	-1.8
2,405,016	+		GFF2382	0.70	-1.2
2,405,016	+		GFF2382	0.70	-3.1
2,405,016	+		GFF2382	0.70	-0.3
2,405,016	+		GFF2382	0.70	+0.9
2,405,024	-		GFF2382	0.70	-0.3
2,405,024	-		GFF2382	0.70	+0.0
2,405,024	-		GFF2382	0.70	-1.5
2,405,031	+		GFF2382	0.71	+0.6
2,405,033	+		GFF2382	0.71	+1.1
2,405,033	+		GFF2382	0.71	+0.2
2,405,036	+		GFF2382	0.72	-2.5
2,405,036	+		GFF2382	0.72	-0.1
2,405,051	+		GFF2382	0.73	+0.1
2,405,054	-		GFF2382	0.74	+0.2
2,405,058	+		GFF2382	0.74	+0.3
2,405,059	-		GFF2382	0.74	-2.4
2,405,060	+		GFF2382	0.74	+0.2
2,405,071	-		GFF2382	0.76	+0.3
2,405,071	-		GFF2382	0.76	-0.7
2,405,071	-		GFF2382	0.76	-1.2
2,405,073	+		GFF2382	0.76	-0.3
2,405,074	+		GFF2382	0.76	-2.5
2,405,102	-		GFF2382	0.79	+0.4
2,405,107	-		GFF2382	0.80	-0.2
2,405,122	+		GFF2382	0.81	+0.3
2,405,127	+		GFF2382	0.82	-0.8
2,405,132	+		GFF2382	0.82	+0.1
2,405,132	+		GFF2382	0.82	+0.4
2,405,132	+		GFF2382	0.82	-1.0
2,405,132	+		GFF2382	0.82	+0.2
2,405,132	+		GFF2382	0.82	-1.2
2,405,132	+		GFF2382	0.82	+0.8
2,405,132	+		GFF2382	0.82	-1.1
2,405,132	+		GFF2382	0.82	+0.2
2,405,140	-		GFF2382	0.83	+0.7
2,405,140	-		GFF2382	0.83	-0.2
2,405,140	-		GFF2382	0.83	-0.7
2,405,140	-		GFF2382	0.83	-0.1
2,405,140	-		GFF2382	0.83	-0.8
2,405,140	-		GFF2382	0.83	-1.2
2,405,140	-		GFF2382	0.83	+0.2
2,405,140	-		GFF2382	0.83	+0.0
2,405,140	-		GFF2382	0.83	-0.7
2,405,140	-		GFF2382	0.83	-0.3
2,405,140	-		GFF2382	0.83	+0.4
2,405,140	-		GFF2382	0.83	-0.8
2,405,140	-		GFF2382	0.83	-2.1
2,405,152	-		GFF2382	0.85	-1.7
2,405,202	-				-0.0
2,405,214	+				+0.4
2,405,216	+				-1.1
2,405,216	+				+0.2
2,405,216	+				-1.5
2,405,224	-				-0.1
2,405,224	-				+0.5
2,405,224	-				+0.2
2,405,226	+				-1.0
2,405,245	+				+1.0
2,405,256	-				+0.4
2,405,271	+				-1.5
2,405,272	+				+0.2
2,405,272	+				-1.1
2,405,272	+				+0.5
2,405,280	-				-0.7
2,405,280	-				+1.0
2,405,282	+				-1.1
2,405,282	+				+0.7
2,405,282	+				-0.5
2,405,282	+				+0.2
2,405,282	+				-1.0
2,405,285	-				-1.1
2,405,285	-				+1.3
2,405,290	-				+0.4
2,405,290	-				-2.8
2,405,290	-				+0.1
2,405,292	+				+0.6
2,405,292	+				-0.3
2,405,322	+				-0.9
2,405,330	+				-0.2
2,405,338	-				+0.5
2,405,338	-				-0.2
2,405,338	-				+1.1
2,405,338	-				-1.2
2,405,340	+				-0.3
2,405,340	+				-1.0
2,405,345	+				+0.9
2,405,376	-				-0.1
2,405,381	-				-0.3
2,405,406	+				-1.9
2,405,412	+				+1.0
2,405,412	+				-0.6
2,405,412	+				-0.1
2,405,412	+				+0.8
2,405,420	-		GFF2383	0.20	-0.3
2,405,420	-		GFF2383	0.20	-0.0
2,405,420	-		GFF2383	0.20	-0.2
2,405,436	-		GFF2383	0.41	+0.1
2,405,436	-		GFF2383	0.41	+0.7
2,405,470	+		GFF2383	0.86	+0.3
2,405,470	+		GFF2383	0.86	+1.0
2,405,477	+				+1.1
2,405,482	+				-2.2
2,405,485	-				-0.8
2,405,485	-				-1.3
2,405,492	+				+0.7
2,405,492	+				+0.2
2,405,492	+				-0.8
2,405,492	+				+0.4
2,405,492	+				+0.1
2,405,492	+				-0.0
2,405,500	-				-1.5
2,405,500	-				+1.0
2,405,500	-				+0.7
2,405,500	-				-1.5
2,405,500	-				+0.7
2,405,500	-				-1.7
2,405,500	-				-0.3
2,405,558	-				+0.8
2,405,591	+				-1.1
2,405,606	+				-2.0
2,405,638	-				-0.4
2,405,642	+				+0.9
2,405,664	+				-0.6
2,405,694	+				+1.0
2,405,694	+				+0.8
2,405,694	+				-0.8
2,405,694	+				-0.1
2,405,694	+				-0.7
2,405,694	+				+1.7
2,405,700	-				-1.2
2,405,702	-				-1.5
2,405,702	-				-0.7
2,405,702	-				-0.5
2,405,702	-				-0.6
2,405,702	-				-0.7
2,405,702	-				+0.6
2,405,711	+				-1.5
2,405,719	-				-0.3
2,405,720	+				+1.1
2,405,721	+				+0.9
2,405,724	+				-1.8
2,405,724	+				+0.3
2,405,730	+				+1.0
2,405,734	+				+0.6
2,405,734	+				-0.8
2,405,734	+				+0.4
2,405,742	-				-0.3
2,405,742	-				-0.2
2,405,819	+				-0.2
2,405,824	+				+0.8
2,405,824	+				+1.2
2,405,824	+				+0.1
2,405,824	+				-2.9
2,405,824	+				+0.3
2,405,824	+				-0.2
2,405,824	+				-0.6
2,405,824	+				-0.1
2,405,827	-				+0.4
2,405,832	-		GFF2384	0.10	-1.1
2,405,832	-		GFF2384	0.10	-2.2
2,405,832	-		GFF2384	0.10	+0.2
2,405,832	-		GFF2384	0.10	+0.2
2,405,832	-		GFF2384	0.10	+0.2
2,405,832	-		GFF2384	0.10	-2.3
2,405,832	-		GFF2384	0.10	-0.0
2,405,858	-		GFF2384	0.13	+1.0
2,405,861	-		GFF2384	0.13	-0.2
2,405,875	+		GFF2384	0.15	+0.3
2,405,881	-		GFF2384	0.15	-0.6
2,405,883	-		GFF2384	0.16	+1.0
2,405,883	-		GFF2384	0.16	-1.7
2,405,896	+		GFF2384	0.17	-0.0
2,405,896	+		GFF2384	0.17	-0.0
2,405,896	+		GFF2384	0.17	-0.3
2,405,909	-		GFF2384	0.19	-1.3
2,405,924	-		GFF2384	0.20	-0.8
2,405,946	-		GFF2384	0.23	-1.9
2,405,967	+		GFF2384	0.25	-0.5
2,405,990	-		GFF2384	0.27	-2.1
2,406,035	-		GFF2384	0.32	-1.8
2,406,068	-		GFF2384	0.36	-0.6
2,406,089	-		GFF2384	0.38	-1.3
2,406,102	+		GFF2384	0.39	-0.3
2,406,102	+		GFF2384	0.39	-0.2
2,406,110	-		GFF2384	0.40	-0.3
2,406,111	+		GFF2384	0.40	+0.1
2,406,112	+		GFF2384	0.40	+1.0
2,406,115	-		GFF2384	0.41	-0.4
2,406,117	+		GFF2384	0.41	-0.2
2,406,120	-		GFF2384	0.41	-0.3
2,406,131	+		GFF2384	0.43	+0.7
2,406,131	+		GFF2384	0.43	+0.2
2,406,139	-		GFF2384	0.43	+0.5
2,406,139	-		GFF2384	0.43	-1.9
2,406,139	-		GFF2384	0.43	-0.4
2,406,184	+		GFF2384	0.48	+0.2
2,406,184	+		GFF2384	0.48	-0.2
2,406,184	+		GFF2384	0.48	+0.7
2,406,187	-		GFF2384	0.49	-0.3
2,406,192	-		GFF2384	0.49	-0.6
2,406,192	-		GFF2384	0.49	+1.2
2,406,192	-		GFF2384	0.49	-1.4
2,406,192	-		GFF2384	0.49	+0.8
2,406,205	-		GFF2384	0.51	+0.9
2,406,211	+		GFF2384	0.51	-1.8
2,406,213	+		GFF2384	0.51	-1.7
2,406,213	+		GFF2384	0.51	+0.1
2,406,334	+		GFF2384	0.65	-0.6
2,406,342	-		GFF2384	0.65	+0.9
2,406,342	-		GFF2384	0.65	-0.5
2,406,353	-		GFF2384	0.67	-0.8
2,406,371	-		GFF2384	0.69	-0.3
2,406,373	+		GFF2384	0.69	-1.2
2,406,394	+		GFF2384	0.71	-0.2
2,406,402	-		GFF2384	0.72	-0.6
2,406,402	-		GFF2384	0.72	+0.5
2,406,402	-		GFF2384	0.72	-0.1
2,406,420	-		GFF2384	0.74	-0.3
2,406,426	+		GFF2384	0.74	+0.5
2,406,431	+		GFF2384	0.75	-0.1
2,406,444	-		GFF2384	0.76	-0.3
2,406,462	+		GFF2384	0.78	+0.4
2,406,462	+		GFF2384	0.78	-0.7
2,406,462	+		GFF2384	0.78	-1.9
2,406,462	+		GFF2384	0.78	-0.8
2,406,466	+		GFF2384	0.79	+2.0
2,406,470	-		GFF2384	0.79	-2.2
2,406,470	-		GFF2384	0.79	+1.2
2,406,470	-		GFF2384	0.79	-0.7
2,406,470	-		GFF2384	0.79	-0.5
2,406,470	-		GFF2384	0.79	+0.6
2,406,472	-		GFF2384	0.79	-0.3
2,406,497	-		GFF2384	0.82	-0.2
2,406,523	+		GFF2384	0.85	-0.5
2,406,539	-		GFF2384	0.87	-2.6
2,406,539	-		GFF2384	0.87	+1.4
2,406,572	+				-0.3
2,406,609	+				-1.8
2,406,646	+				-0.6
2,406,670	+				+1.6
2,406,681	-				-0.4
2,406,738	+				-0.5
2,406,738	+				+0.3
2,406,780	-				-0.6
2,406,793	+		GFF2385	0.10	-0.3
2,406,820	-		GFF2385	0.13	+0.2
2,406,877	+		GFF2385	0.20	-1.2
2,406,881	+		GFF2385	0.21	+0.8
2,406,889	-		GFF2385	0.22	-1.5
2,406,914	-		GFF2385	0.25	-0.5
2,406,966	-		GFF2385	0.31	+0.3
2,406,969	+		GFF2385	0.31	+0.4
2,406,969	+		GFF2385	0.31	-0.5
2,406,969	+		GFF2385	0.31	+0.0
2,406,977	-		GFF2385	0.32	+0.0
2,406,977	-		GFF2385	0.32	-0.0
2,407,017	-		GFF2385	0.37	-0.4
2,407,019	+		GFF2385	0.37	+1.0
2,407,019	+		GFF2385	0.37	+0.9
2,407,019	+		GFF2385	0.37	+0.2
2,407,019	+		GFF2385	0.37	-0.1
2,407,019	+		GFF2385	0.37	+0.4
2,407,019	+		GFF2385	0.37	+0.3
2,407,019	+		GFF2385	0.37	-1.2
2,407,019	+		GFF2385	0.37	-1.5
2,407,019	+		GFF2385	0.37	+0.1
2,407,019	+		GFF2385	0.37	-1.5
2,407,019	+		GFF2385	0.37	-0.9
2,407,019	+		GFF2385	0.37	-1.2
2,407,027	-		GFF2385	0.38	+0.4
2,407,027	-		GFF2385	0.38	-0.6
2,407,027	-		GFF2385	0.38	+0.9
2,407,027	-		GFF2385	0.38	-1.2
2,407,027	-		GFF2385	0.38	-2.0
2,407,027	-		GFF2385	0.38	-0.4
2,407,027	-		GFF2385	0.38	-0.3
2,407,027	-		GFF2385	0.38	+0.4
2,407,036	+		GFF2385	0.39	+1.0
2,407,044	-		GFF2385	0.40	+0.6
2,407,046	+		GFF2385	0.41	+0.4
2,407,051	+		GFF2385	0.41	+0.6
2,407,051	+		GFF2385	0.41	-1.2
2,407,054	-		GFF2385	0.41	-1.7
2,407,054	-		GFF2385	0.41	+0.9
2,407,059	-		GFF2385	0.42	+1.2
2,407,059	-		GFF2385	0.42	-0.6
2,407,098	+		GFF2385	0.47	+0.8
2,407,107	-		GFF2385	0.48	-0.8
2,407,114	+		GFF2385	0.49	-0.2
2,407,122	-		GFF2385	0.50	-0.5
2,407,127	-		GFF2385	0.50	-0.1
2,407,137	+		GFF2385	0.51	+1.0
2,407,172	+		GFF2385	0.56	-2.1
2,407,192	-		GFF2385	0.58	+0.1
2,407,222	+		GFF2385	0.62	-2.6
2,407,222	+		GFF2385	0.62	+1.1
2,407,225	-		GFF2385	0.62	+0.4
2,407,225	-		GFF2385	0.62	-0.6
2,407,230	-		GFF2385	0.63	+1.1
2,407,230	-		GFF2385	0.63	-2.3
2,407,239	-		GFF2385	0.64	+2.0
2,407,267	+		GFF2385	0.67	+0.5
2,407,269	-		GFF2385	0.67	+2.0
2,407,272	+		GFF2385	0.68	-1.5
2,407,275	-		GFF2385	0.68	-0.8
2,407,277	+		GFF2385	0.68	+0.2
2,407,277	+		GFF2385	0.68	-0.2
2,407,277	+		GFF2385	0.68	-0.3
2,407,277	+		GFF2385	0.68	+0.4
2,407,354	-		GFF2385	0.77	-0.3
2,407,374	-		GFF2385	0.80	-0.1
2,407,381	+		GFF2385	0.81	+0.7
2,407,382	+		GFF2385	0.81	-0.6
2,407,388	+		GFF2385	0.82	-0.4
2,407,389	-		GFF2385	0.82	-1.8
2,407,389	-		GFF2385	0.82	-2.9
2,407,396	+		GFF2385	0.82	-0.2
2,407,410	+		GFF2385	0.84	-0.1
2,407,411	-		GFF2385	0.84	-0.8
2,407,418	-		GFF2385	0.85	-0.3
2,407,553	-				-0.8