Strain Fitness in Sphingobium sp. HT1-2 around GFF2375

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,397,351	+		GFF2374	0.30	+0.4
2,397,364	-		GFF2374	0.31	+0.3
2,397,404	+		GFF2374	0.34	-0.8
2,397,404	+		GFF2374	0.34	-2.2
2,397,412	-		GFF2374	0.35	+0.8
2,397,417	+		GFF2374	0.36	+0.8
2,397,446	+		GFF2374	0.38	+0.5
2,397,446	+		GFF2374	0.38	-1.6
2,397,446	+		GFF2374	0.38	+0.6
2,397,446	+		GFF2374	0.38	-0.6
2,397,454	-		GFF2374	0.39	-1.3
2,397,454	-		GFF2374	0.39	+1.0
2,397,454	-		GFF2374	0.39	+0.1
2,397,454	-		GFF2374	0.39	+0.1
2,397,454	-		GFF2374	0.39	+1.2
2,397,460	-		GFF2374	0.39	-1.2
2,397,470	+		GFF2374	0.40	-0.5
2,397,470	+		GFF2374	0.40	-0.9
2,397,483	-		GFF2374	0.41	-0.5
2,397,488	-		GFF2374	0.42	-0.6
2,397,488	-		GFF2374	0.42	-0.1
2,397,488	-		GFF2374	0.42	+0.0
2,397,488	-		GFF2374	0.42	-1.6
2,397,494	+		GFF2374	0.42	+1.1
2,397,502	-		GFF2374	0.43	-0.4
2,397,509	+		GFF2374	0.43	-2.3
2,397,509	+		GFF2374	0.43	-1.1
2,397,509	+		GFF2374	0.43	-2.7
2,397,509	+		GFF2374	0.43	+0.6
2,397,509	+		GFF2374	0.43	+0.7
2,397,509	+		GFF2374	0.43	+0.1
2,397,509	+		GFF2374	0.43	-0.2
2,397,509	+		GFF2374	0.43	-0.7
2,397,509	+		GFF2374	0.43	-0.6
2,397,509	+		GFF2374	0.43	+0.0
2,397,509	+		GFF2374	0.43	+1.0
2,397,509	+		GFF2374	0.43	-0.9
2,397,517	-		GFF2374	0.44	+0.4
2,397,517	-		GFF2374	0.44	+0.2
2,397,517	-		GFF2374	0.44	-0.2
2,397,517	-		GFF2374	0.44	-0.3
2,397,517	-		GFF2374	0.44	+0.3
2,397,517	-		GFF2374	0.44	-0.9
2,397,517	-		GFF2374	0.44	-3.1
2,397,532	+		GFF2374	0.45	-1.3
2,397,535	-		GFF2374	0.46	-0.6
2,397,540	-		GFF2374	0.46	+0.4
2,397,540	-		GFF2374	0.46	+0.0
2,397,551	+		GFF2374	0.47	+0.1
2,397,551	+		GFF2374	0.47	+0.8
2,397,564	-		GFF2374	0.48	-0.1
2,397,574	+		GFF2374	0.49	+0.2
2,397,574	+		GFF2374	0.49	-2.5
2,397,574	+		GFF2374	0.49	-0.3
2,397,582	-		GFF2374	0.49	-0.0
2,397,582	-		GFF2374	0.49	-0.2
2,397,583	+		GFF2374	0.50	-2.4
2,397,584	+		GFF2374	0.50	+0.2
2,397,591	-		GFF2374	0.50	+0.1
2,397,625	+		GFF2374	0.53	-0.5
2,397,634	+		GFF2374	0.54	-0.9
2,397,644	+		GFF2374	0.55	+0.3
2,397,644	+		GFF2374	0.55	-0.7
2,397,644	+		GFF2374	0.55	-1.3
2,397,652	-		GFF2374	0.55	-1.0
2,397,657	+		GFF2374	0.56	-0.9
2,397,657	-		GFF2374	0.56	-0.2
2,397,657	-		GFF2374	0.56	-0.7
2,397,659	+		GFF2374	0.56	-0.7
2,397,659	+		GFF2374	0.56	-2.8
2,397,659	+		GFF2374	0.56	+0.6
2,397,659	+		GFF2374	0.56	-0.1
2,397,659	+		GFF2374	0.56	-1.2
2,397,659	+		GFF2374	0.56	+0.6
2,397,659	+		GFF2374	0.56	+0.9
2,397,659	+		GFF2374	0.56	+0.2
2,397,667	-		GFF2374	0.57	-0.1
2,397,689	+		GFF2374	0.59	+1.0
2,397,697	-		GFF2374	0.59	+1.2
2,397,716	-		GFF2374	0.61	-0.6
2,397,716	-		GFF2374	0.61	-0.9
2,397,788	-		GFF2374	0.67	-2.2
2,397,794	+		GFF2374	0.67	-0.2
2,397,796	+		GFF2374	0.68	-0.8
2,397,804	-		GFF2374	0.68	-1.0
2,397,804	-		GFF2374	0.68	-2.9
2,397,804	-		GFF2374	0.68	-2.9
2,397,811	+		GFF2374	0.69	+1.0
2,397,819	-		GFF2374	0.70	-0.3
2,397,821	+		GFF2374	0.70	-0.9
2,397,821	+		GFF2374	0.70	+0.0
2,397,821	+		GFF2374	0.70	-0.4
2,397,832	-		GFF2374	0.71	-0.7
2,397,844	+		GFF2374	0.72	+1.2
2,397,844	+		GFF2374	0.72	+0.2
2,397,844	+		GFF2374	0.72	+0.5
2,397,844	+		GFF2374	0.72	-1.0
2,397,844	+		GFF2374	0.72	+0.8
2,397,844	+		GFF2374	0.72	-0.8
2,397,844	+		GFF2374	0.72	-1.7
2,397,844	+		GFF2374	0.72	+1.4
2,397,844	+		GFF2374	0.72	-0.3
2,397,844	+		GFF2374	0.72	-1.7
2,397,852	-		GFF2374	0.72	-2.3
2,397,852	-		GFF2374	0.72	+0.2
2,397,852	-		GFF2374	0.72	-1.7
2,397,852	-		GFF2374	0.72	-0.8
2,397,852	-		GFF2374	0.72	-0.3
2,397,854	+		GFF2374	0.73	-0.3
2,397,855	+		GFF2374	0.73	-1.1
2,397,862	-		GFF2374	0.73	-0.3
2,397,882	+		GFF2374	0.75	-2.1
2,397,883	-		GFF2374	0.75	-1.3
2,397,890	-		GFF2374	0.76	+0.4
2,397,903	+		GFF2374	0.77	+0.2
2,397,935	-		GFF2374	0.79	-0.3
2,397,956	-		GFF2374	0.81	+0.3
2,397,960	+		GFF2374	0.81	-3.0
2,397,965	+		GFF2374	0.82	-1.5
2,397,966	+		GFF2374	0.82	+0.0
2,397,966	+		GFF2374	0.82	+0.2
2,397,966	+		GFF2374	0.82	-0.9
2,397,966	+		GFF2374	0.82	-1.2
2,397,968	-		GFF2374	0.82	+1.2
2,397,974	-		GFF2374	0.83	+1.1
2,397,974	-		GFF2374	0.83	+0.2
2,397,974	-		GFF2374	0.83	+0.6
2,397,974	-		GFF2374	0.83	-0.2
2,397,974	-		GFF2374	0.83	-0.5
2,397,998	+		GFF2374	0.85	-0.0
2,398,010	+		GFF2374	0.86	-1.3
2,398,016	+		GFF2374	0.86	-0.5
2,398,021	+		GFF2374	0.87	-1.2
2,398,021	+		GFF2374	0.87	-0.4
2,398,021	+		GFF2374	0.87	+0.9
2,398,021	+		GFF2374	0.87	+0.2
2,398,024	-		GFF2374	0.87	-0.6
2,398,029	-		GFF2374	0.87	-1.1
2,398,029	-		GFF2374	0.87	-0.8
2,398,029	-		GFF2374	0.87	+0.0
2,398,045	+		GFF2374	0.89	-0.9
2,398,045	+		GFF2374	0.89	+0.4
2,398,050	+		GFF2374	0.89	-0.5
2,398,056	+		GFF2374	0.90	+0.9
2,398,056	+		GFF2374	0.90	-0.1
2,398,058	+		GFF2374	0.90	+1.4
2,398,058	-		GFF2374	0.90	+1.4
2,398,063	+				-0.9
2,398,066	-				-1.3
2,398,068	+				+0.4
2,398,076	-				-0.5
2,398,082	+				-2.1
2,398,105	-				-0.4
2,398,126	+				-0.6
2,398,126	+				-1.3
2,398,153	-				-1.5
2,398,163	+				-1.5
2,398,168	-				+0.0
2,398,231	+				-1.8
2,398,231	+				+0.5
2,398,239	-				+0.2
2,398,239	-				+0.8
2,398,262	-				-0.8
2,398,262	-				-1.2
2,398,265	+				-0.7
2,398,299	+				+0.1
2,398,300	+				+0.1
2,398,312	-				+0.1
2,398,352	+				-0.3
2,398,360	-				-0.8
2,398,380	-				-0.1
2,398,384	+				-1.3
2,398,395	-				-0.8
2,398,453	-		GFF2375	0.14	-0.3
2,398,476	-		GFF2375	0.17	+1.4
2,398,480	+		GFF2375	0.17	+0.5
2,398,523	+		GFF2375	0.22	+0.8
2,398,523	+		GFF2375	0.22	+0.3
2,398,528	+		GFF2375	0.22	+0.3
2,398,528	+		GFF2375	0.22	-2.1
2,398,530	+		GFF2375	0.23	-0.2
2,398,531	-		GFF2375	0.23	-1.6
2,398,531	-		GFF2375	0.23	-2.3
2,398,533	+		GFF2375	0.23	+0.8
2,398,536	-		GFF2375	0.23	-0.1
2,398,536	-		GFF2375	0.23	+0.9
2,398,536	-		GFF2375	0.23	+0.2
2,398,536	-		GFF2375	0.23	-2.5
2,398,536	-		GFF2375	0.23	-1.9
2,398,536	-		GFF2375	0.23	-0.5
2,398,540	+		GFF2375	0.24	+1.0
2,398,543	+		GFF2375	0.24	-1.1
2,398,550	+		GFF2375	0.25	-0.0
2,398,558	-		GFF2375	0.26	-0.3
2,398,581	-		GFF2375	0.28	+0.8
2,398,587	+		GFF2375	0.29	+0.0
2,398,600	-		GFF2375	0.31	-0.4
2,398,600	-		GFF2375	0.31	-0.1
2,398,600	-		GFF2375	0.31	-0.1
2,398,600	-		GFF2375	0.31	+1.7
2,398,600	-		GFF2375	0.31	+0.0
2,398,620	+		GFF2375	0.33	-0.1
2,398,623	-		GFF2375	0.33	+0.1
2,398,631	+		GFF2375	0.34	+1.1
2,398,636	+		GFF2375	0.35	-1.5
2,398,653	-		GFF2375	0.37	-0.3
2,398,655	+		GFF2375	0.37	-0.3
2,398,661	+		GFF2375	0.38	-0.5
2,398,661	+		GFF2375	0.38	-1.0
2,398,666	+		GFF2375	0.38	+0.5
2,398,669	-		GFF2375	0.38	-0.2
2,398,669	-		GFF2375	0.38	-0.4
2,398,669	-		GFF2375	0.38	+0.1
2,398,669	-		GFF2375	0.38	+1.0
2,398,669	-		GFF2375	0.38	-0.8
2,398,669	-		GFF2375	0.38	-0.5
2,398,669	-		GFF2375	0.38	-0.0
2,398,699	+		GFF2375	0.42	-1.4
2,398,699	+		GFF2375	0.42	-0.7
2,398,707	-		GFF2375	0.43	-2.1
2,398,738	+		GFF2375	0.46	-0.8
2,398,747	+		GFF2375	0.47	-1.0
2,398,755	-		GFF2375	0.48	-0.6
2,398,764	+		GFF2375	0.49	-0.5
2,398,772	-		GFF2375	0.50	+0.7
2,398,772	-		GFF2375	0.50	+0.8
2,398,774	+		GFF2375	0.50	-0.1
2,398,792	-		GFF2375	0.52	-0.4
2,398,821	+		GFF2375	0.56	+0.7
2,398,821	+		GFF2375	0.56	-0.2
2,398,829	-		GFF2375	0.57	-1.3
2,398,856	+		GFF2375	0.60	-1.1
2,398,856	+		GFF2375	0.60	+0.2
2,398,860	-		GFF2375	0.60	-1.6
2,398,918	-		GFF2375	0.67	+0.2
2,398,922	+		GFF2375	0.67	+1.1
2,398,922	+		GFF2375	0.67	+0.3
2,398,922	+		GFF2375	0.67	-0.9
2,398,930	-		GFF2375	0.68	-0.1
2,398,930	-		GFF2375	0.68	+0.3
2,398,930	-		GFF2375	0.68	+0.2
2,398,955	-		GFF2375	0.71	-0.2
2,398,967	+		GFF2375	0.72	+0.7
2,398,967	+		GFF2375	0.72	-1.1
2,398,967	+		GFF2375	0.72	-0.5
2,398,967	+		GFF2375	0.72	+0.2
2,398,967	+		GFF2375	0.72	-2.5
2,398,967	+		GFF2375	0.72	-0.3
2,398,967	+		GFF2375	0.72	+0.4
2,398,973	-		GFF2375	0.73	-0.0
2,398,974	-		GFF2375	0.73	-0.7
2,398,975	-		GFF2375	0.73	-0.8
2,398,975	-		GFF2375	0.73	-0.0
2,398,975	-		GFF2375	0.73	-1.3
2,398,975	-		GFF2375	0.73	+1.5
2,398,975	-		GFF2375	0.73	-0.6
2,398,975	-		GFF2375	0.73	-1.1
2,399,030	+		GFF2375	0.79	+0.1
2,399,030	+		GFF2375	0.79	+1.8
2,399,030	+		GFF2375	0.79	-0.6
2,399,030	+		GFF2375	0.79	-1.1
2,399,031	-		GFF2375	0.79	-0.5
2,399,038	-		GFF2375	0.80	+1.0
2,399,038	-		GFF2375	0.80	+0.4
2,399,038	-		GFF2375	0.80	+0.6
2,399,039	+		GFF2375	0.80	+1.0
2,399,039	+		GFF2375	0.80	-0.4
2,399,049	+		GFF2375	0.82	+0.1
2,399,070	+		GFF2375	0.84	+0.2
2,399,071	+		GFF2375	0.84	+0.3
2,399,075	+		GFF2375	0.84	+0.5
2,399,075	+		GFF2375	0.84	+0.5
2,399,075	+		GFF2375	0.84	+1.0
2,399,075	+		GFF2375	0.84	+1.0
2,399,075	+		GFF2375	0.84	-0.0
2,399,075	+		GFF2375	0.84	-0.7
2,399,078	-		GFF2375	0.85	+1.2
2,399,078	-		GFF2375	0.85	-0.2
2,399,083	-		GFF2375	0.85	+0.1
2,399,083	-		GFF2375	0.85	-0.7
2,399,083	-		GFF2375	0.85	-0.4
2,399,083	-		GFF2375	0.85	+0.3
2,399,083	-		GFF2375	0.85	-0.3
2,399,083	-		GFF2375	0.85	-0.5
2,399,083	-		GFF2375	0.85	+0.1
2,399,083	-		GFF2375	0.85	-0.5
2,399,093	-		GFF2375	0.87	+1.1
2,399,114	+		GFF2375	0.89	+0.4
2,399,130	-				-1.1
2,399,149	-				+0.4
2,399,156	+				-0.5
2,399,156	+				-2.8
2,399,156	+				-0.5
2,399,156	+				-0.4
2,399,159	-				+0.4
2,399,164	-				-2.3
2,399,164	-				+0.6
2,399,164	-				-0.7
2,399,186	+				-0.9
2,399,186	+				-0.6
2,399,188	+				-1.9
2,399,188	+				+0.0
2,399,188	+				-1.3
2,399,194	-				-0.2
2,399,196	-				+0.2
2,399,196	-				-1.9
2,399,196	-				+0.0
2,399,196	-				-1.8
2,399,196	-				+1.1
2,399,205	+				+0.0
2,399,213	-				+0.2
2,399,224	+				-0.2
2,399,224	+				-2.2
2,399,224	+				+0.4
2,399,224	+				-0.8
2,399,232	-				-1.3
2,399,235	+				-0.1
2,399,238	+				+1.0
2,399,243	+				-0.7
2,399,246	-				+0.8
2,399,246	-				+0.7
2,399,251	-				-0.5
2,399,256	-				-1.5
2,399,259	+				-0.7
2,399,269	-				+0.7
2,399,273	+				-1.3
2,399,328	+		GFF2376	0.15	-0.3
2,399,328	+		GFF2376	0.15	-0.2
2,399,336	-		GFF2376	0.16	-1.5
2,399,344	-		GFF2376	0.18	-0.7
2,399,344	-		GFF2376	0.18	-2.0
2,399,360	+		GFF2376	0.20	-0.5
2,399,360	+		GFF2376	0.20	-2.5
2,399,368	-		GFF2376	0.22	+1.0
2,399,402	+		GFF2376	0.27	-1.6
2,399,405	-		GFF2376	0.28	+0.4
2,399,405	-		GFF2376	0.28	-0.2
2,399,405	-		GFF2376	0.28	+0.3
2,399,405	-		GFF2376	0.28	-1.0
2,399,408	+		GFF2376	0.28	-0.4
2,399,408	+		GFF2376	0.28	-0.5
2,399,413	+		GFF2376	0.29	-1.0
2,399,413	+		GFF2376	0.29	-1.8
2,399,413	+		GFF2376	0.29	-1.5
2,399,418	+		GFF2376	0.30	+0.6
2,399,433	-		GFF2376	0.32	-0.0
2,399,440	-		GFF2376	0.34	-1.8
2,399,440	-		GFF2376	0.34	+0.5
2,399,442	+		GFF2376	0.34	+0.5
2,399,442	+		GFF2376	0.34	-0.3
2,399,442	+		GFF2376	0.34	-0.6
2,399,442	+		GFF2376	0.34	+0.6
2,399,443	-		GFF2376	0.34	-1.0
2,399,448	-		GFF2376	0.35	-0.3
2,399,448	-		GFF2376	0.35	-0.4
2,399,450	-		GFF2376	0.35	+0.0
2,399,450	-		GFF2376	0.35	+0.5
2,399,450	-		GFF2376	0.35	-0.3
2,399,453	+		GFF2376	0.36	+1.0
2,399,453	+		GFF2376	0.36	+0.7
2,399,476	+		GFF2376	0.40	+1.2
2,399,476	+		GFF2376	0.40	-0.3
2,399,484	+		GFF2376	0.41	-1.2
2,399,484	-		GFF2376	0.41	-0.1
2,399,484	-		GFF2376	0.41	-2.1
2,399,493	-		GFF2376	0.43	-0.1
2,399,495	+		GFF2376	0.43	-0.1
2,399,495	+		GFF2376	0.43	+0.1
2,399,495	+		GFF2376	0.43	-0.8
2,399,495	+		GFF2376	0.43	-0.5
2,399,499	+		GFF2376	0.44	-1.0
2,399,503	-		GFF2376	0.44	+0.7
2,399,503	-		GFF2376	0.44	+0.0
2,399,524	+		GFF2376	0.48	+1.1
2,399,543	-		GFF2376	0.51	-0.2
2,399,543	-		GFF2376	0.51	-0.9
2,399,580	-		GFF2376	0.57	-0.9
2,399,606	+		GFF2376	0.62	+0.1
2,399,606	+		GFF2376	0.62	+0.1
2,399,606	+		GFF2376	0.62	-0.5
2,399,614	-		GFF2376	0.63	-1.6
2,399,664	-		GFF2376	0.71	-0.1
2,399,788	+				-1.2
2,399,788	+				-2.3
2,399,796	-				-1.2
2,399,796	-				+0.4
2,399,875	+				-2.9
2,399,875	+				+0.0
2,399,875	+				-0.3
2,399,883	-				+0.3
2,399,885	+				+0.2
2,399,885	+				-1.8
2,399,885	+				+0.8
2,399,885	+				-0.1
2,399,908	+				-1.6
2,399,927	+				-0.0
2,399,927	+				-0.8
2,399,927	+				-0.2
2,399,927	+				+0.3
2,399,935	-				+0.8
2,399,937	+				+0.6
2,399,946	-				-1.1
2,399,946	-				+0.5
2,399,982	+		GFF2377	0.12	-2.6
2,399,982	+		GFF2377	0.12	-0.7
2,399,982	+		GFF2377	0.12	-2.5
2,399,990	-		GFF2377	0.13	-0.5
2,399,990	-		GFF2377	0.13	-0.3
2,399,999	+		GFF2377	0.14	-0.1
2,400,003	+		GFF2377	0.14	+0.8
2,400,025	-		GFF2377	0.17	+0.9
2,400,025	-		GFF2377	0.17	-1.1
2,400,033	+		GFF2377	0.18	-0.6
2,400,055	+		GFF2377	0.20	+1.2
2,400,055	+		GFF2377	0.20	-1.1
2,400,056	+		GFF2377	0.20	+1.1
2,400,057	-		GFF2377	0.20	-0.3
2,400,078	-		GFF2377	0.23	+1.1
2,400,121	-		GFF2377	0.28	+1.3
2,400,128	+		GFF2377	0.29	+0.2
2,400,154	+		GFF2377	0.32	-1.4
2,400,156	-		GFF2377	0.32	-0.1
2,400,162	-		GFF2377	0.33	-1.6
2,400,162	-		GFF2377	0.33	-0.3
2,400,163	-		GFF2377	0.33	-1.2
2,400,198	+		GFF2377	0.37	-0.1