Strain Fitness in Sphingobium sp. HT1-2 around GFF235

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF233 and GFF234 are separated by 55 nucleotidesGFF234 and GFF235 are separated by 34 nucleotidesGFF235 and GFF236 are separated by 372 nucleotidesGFF236 and GFF237 are separated by 72 nucleotides GFF233 - 'Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II' transl_table=11, at 237,110 to 239,215 GFF233 GFF234 - hypothetical protein, at 239,271 to 239,558 GFF234 GFF235 - Phage protein (ACLAME 827), at 239,593 to 239,883 GFF235 GFF236 - LSU ribosomal protein L10p (P0), at 240,256 to 240,771 GFF236 GFF237 - LSU ribosomal protein L7p/L12p (P1/P2), at 240,844 to 241,218 GFF237 Position (kb) 239 240Strain fitness (log2 ratio) -2 -1 0 1 2at 238.596 kb on - strand, within GFF233at 238.601 kb on - strand, within GFF233at 238.623 kb on - strand, within GFF233at 238.660 kb on + strand, within GFF233at 238.663 kb on - strand, within GFF233at 238.665 kb on + strand, within GFF233at 238.678 kb on - strand, within GFF233at 238.692 kb on + strand, within GFF233at 238.715 kb on + strand, within GFF233at 238.744 kb on - strand, within GFF233at 238.767 kb on - strand, within GFF233at 238.779 kb on + strand, within GFF233at 238.803 kb on + strand, within GFF233at 238.803 kb on + strand, within GFF233at 238.811 kb on - strand, within GFF233at 238.821 kb on + strand, within GFF233at 238.884 kb on + strand, within GFF233at 238.884 kb on + strand, within GFF233at 238.900 kb on + strand, within GFF233at 238.923 kb on + strand, within GFF233at 238.942 kb on - strand, within GFF233at 238.955 kb on + strand, within GFF233at 238.955 kb on + strand, within GFF233at 238.975 kb on + strand, within GFF233at 238.975 kb on + strand, within GFF233at 238.975 kb on + strand, within GFF233at 238.981 kb on + strand, within GFF233at 238.981 kb on + strand, within GFF233at 238.983 kb on - strand, within GFF233at 238.989 kb on - strand, within GFF233at 238.997 kb on + strand, within GFF233at 239.004 kb on - strand, within GFF233at 239.048 kb on + strandat 239.073 kb on + strandat 239.087 kb on - strandat 239.097 kb on - strandat 239.102 kb on + strandat 239.115 kb on - strandat 239.115 kb on - strandat 239.127 kb on + strandat 239.127 kb on + strandat 239.135 kb on - strandat 239.135 kb on - strandat 239.135 kb on - strandat 239.174 kb on - strandat 239.185 kb on + strandat 239.185 kb on + strandat 239.185 kb on + strandat 239.193 kb on - strandat 239.194 kb on + strandat 239.200 kb on - strandat 239.210 kb on + strandat 239.210 kb on + strandat 239.218 kb on - strandat 239.218 kb on - strandat 239.241 kb on + strandat 239.241 kb on + strandat 239.241 kb on + strandat 239.249 kb on - strandat 239.252 kb on + strandat 239.304 kb on - strand, within GFF234at 239.304 kb on - strand, within GFF234at 239.326 kb on - strand, within GFF234at 239.344 kb on - strand, within GFF234at 239.348 kb on + strand, within GFF234at 239.356 kb on - strand, within GFF234at 239.403 kb on - strand, within GFF234at 239.450 kb on - strand, within GFF234at 239.593 kb on - strandat 239.594 kb on - strandat 239.599 kb on - strandat 239.599 kb on - strandat 239.609 kb on + strandat 239.609 kb on + strandat 239.609 kb on + strandat 239.609 kb on + strandat 239.609 kb on + strandat 239.609 kb on + strandat 239.616 kb on + strandat 239.617 kb on - strandat 239.617 kb on - strandat 239.617 kb on - strandat 239.617 kb on - strandat 239.617 kb on - strandat 239.617 kb on - strandat 239.617 kb on - strandat 239.624 kb on - strand, within GFF235at 239.624 kb on - strand, within GFF235at 239.630 kb on - strand, within GFF235at 239.635 kb on - strand, within GFF235at 239.657 kb on + strand, within GFF235at 239.665 kb on - strand, within GFF235at 239.665 kb on - strand, within GFF235at 239.668 kb on - strand, within GFF235at 239.679 kb on + strand, within GFF235at 239.681 kb on - strand, within GFF235at 239.687 kb on - strand, within GFF235at 239.699 kb on + strand, within GFF235at 239.753 kb on - strand, within GFF235at 239.761 kb on - strand, within GFF235at 239.768 kb on + strand, within GFF235at 239.768 kb on + strand, within GFF235at 239.768 kb on + strand, within GFF235at 239.770 kb on + strand, within GFF235at 239.776 kb on - strand, within GFF235at 239.778 kb on - strand, within GFF235at 239.778 kb on - strand, within GFF235at 239.800 kb on - strand, within GFF235at 239.810 kb on + strand, within GFF235at 239.810 kb on + strand, within GFF235at 239.841 kb on + strand, within GFF235at 239.841 kb on + strand, within GFF235at 239.849 kb on - strand, within GFF235at 239.849 kb on - strand, within GFF235at 239.855 kb on + strandat 239.867 kb on - strandat 239.868 kb on - strandat 239.869 kb on + strandat 239.877 kb on + strandat 239.915 kb on + strandat 239.924 kb on + strandat 239.952 kb on + strandat 239.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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238,596 - GFF233 0.71 +0.4
238,601 - GFF233 0.71 +0.5
238,623 - GFF233 0.72 -0.1
238,660 + GFF233 0.74 -1.3
238,663 - GFF233 0.74 -0.1
238,665 + GFF233 0.74 -0.8
238,678 - GFF233 0.74 -1.7
238,692 + GFF233 0.75 -0.8
238,715 + GFF233 0.76 +0.0
238,744 - GFF233 0.78 -1.8
238,767 - GFF233 0.79 -2.0
238,779 + GFF233 0.79 -1.6
238,803 + GFF233 0.80 -0.9
238,803 + GFF233 0.80 +1.3
238,811 - GFF233 0.81 +0.2
238,821 + GFF233 0.81 -1.2
238,884 + GFF233 0.84 +0.1
238,884 + GFF233 0.84 +1.7
238,900 + GFF233 0.85 -1.5
238,923 + GFF233 0.86 -0.6
238,942 - GFF233 0.87 +1.7
238,955 + GFF233 0.88 +0.2
238,955 + GFF233 0.88 -1.2
238,975 + GFF233 0.89 -0.5
238,975 + GFF233 0.89 +0.1
238,975 + GFF233 0.89 -1.5
238,981 + GFF233 0.89 -0.2
238,981 + GFF233 0.89 -0.8
238,983 - GFF233 0.89 -1.3
238,989 - GFF233 0.89 +1.6
238,997 + GFF233 0.90 +1.6
239,004 - GFF233 0.90 -0.2
239,048 + +0.2
239,073 + +0.1
239,087 - +0.1
239,097 - +0.1
239,102 + +0.2
239,115 - -0.7
239,115 - +0.3
239,127 + -1.2
239,127 + +1.0
239,135 - +0.1
239,135 - -0.3
239,135 - -0.2
239,174 - +0.5
239,185 + -0.5
239,185 + -0.7
239,185 + +0.0
239,193 - -0.3
239,194 + -0.6
239,200 - -1.2
239,210 + -1.6
239,210 + +1.5
239,218 - -0.5
239,218 - -0.2
239,241 + -0.1
239,241 + +1.1
239,241 + -0.2
239,249 - -1.8
239,252 + -0.3
239,304 - GFF234 0.11 -1.6
239,304 - GFF234 0.11 -2.0
239,326 - GFF234 0.19 -1.8
239,344 - GFF234 0.25 -0.3
239,348 + GFF234 0.27 -2.6
239,356 - GFF234 0.30 -0.1
239,403 - GFF234 0.46 -1.9
239,450 - GFF234 0.62 -1.8
239,593 - +0.7
239,594 - -1.7
239,599 - -1.4
239,599 - +0.3
239,609 + -2.3
239,609 + -0.3
239,609 + +0.0
239,609 + +0.4
239,609 + +0.8
239,609 + -1.8
239,616 + -0.5
239,617 - -0.2
239,617 - +0.9
239,617 - -2.4
239,617 - -0.8
239,617 - -0.1
239,617 - +1.2
239,617 - +0.2
239,624 - GFF235 0.11 -0.9
239,624 - GFF235 0.11 +0.3
239,630 - GFF235 0.13 -0.9
239,635 - GFF235 0.14 -2.3
239,657 + GFF235 0.22 -0.8
239,665 - GFF235 0.25 -1.2
239,665 - GFF235 0.25 +0.3
239,668 - GFF235 0.26 -0.5
239,679 + GFF235 0.30 +1.4
239,681 - GFF235 0.30 +0.0
239,687 - GFF235 0.32 -0.2
239,699 + GFF235 0.36 -0.9
239,753 - GFF235 0.55 -1.5
239,761 - GFF235 0.58 +0.6
239,768 + GFF235 0.60 +0.4
239,768 + GFF235 0.60 -1.5
239,768 + GFF235 0.60 -0.5
239,770 + GFF235 0.61 -0.1
239,776 - GFF235 0.63 -0.5
239,778 - GFF235 0.64 -0.3
239,778 - GFF235 0.64 +1.0
239,800 - GFF235 0.71 +0.8
239,810 + GFF235 0.75 -0.3
239,810 + GFF235 0.75 -1.7
239,841 + GFF235 0.85 +0.7
239,841 + GFF235 0.85 +0.8
239,849 - GFF235 0.88 -0.7
239,849 - GFF235 0.88 -0.3
239,855 + -0.9
239,867 - +2.0
239,868 - -0.5
239,869 + -0.9
239,877 + -0.8
239,915 + -0.5
239,924 + -2.5
239,952 + -0.9
239,961 - +0.8

Or see this region's nucleotide sequence