Strain Fitness in Sphingobium sp. HT1-2 around GFF2345

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,369,782	-				-1.2
2,369,933	+				-0.4
2,370,526	-		GFF2345	0.27	-0.9
2,370,532	+		GFF2345	0.27	+0.9
2,370,532	+		GFF2345	0.27	-0.5
2,370,532	+		GFF2345	0.27	-0.1
2,370,532	+		GFF2345	0.27	+1.9
2,370,532	+		GFF2345	0.27	-0.7
2,370,532	+		GFF2345	0.27	-0.6
2,370,532	+		GFF2345	0.27	+0.6
2,370,532	+		GFF2345	0.27	+1.2
2,370,532	+		GFF2345	0.27	+2.0
2,370,540	-		GFF2345	0.28	-0.5
2,370,540	-		GFF2345	0.28	+0.2
2,370,540	-		GFF2345	0.28	-1.7
2,370,540	-		GFF2345	0.28	-1.2
2,370,540	-		GFF2345	0.28	+0.2
2,370,540	-		GFF2345	0.28	+0.5
2,370,540	-		GFF2345	0.28	+0.9
2,370,557	+		GFF2345	0.30	+0.2
2,370,565	+		GFF2345	0.31	+0.2
2,370,566	-		GFF2345	0.31	-0.3
2,370,578	-		GFF2345	0.32	-0.5
2,370,581	+		GFF2345	0.32	-0.8
2,370,581	+		GFF2345	0.32	-0.3
2,370,596	-		GFF2345	0.34	-0.6
2,370,605	+		GFF2345	0.34	-0.2
2,370,613	-		GFF2345	0.35	-1.8
2,370,613	-		GFF2345	0.35	-1.8
2,370,613	-		GFF2345	0.35	+0.1
2,370,613	-		GFF2345	0.35	+1.8
2,370,613	-		GFF2345	0.35	+1.4
2,370,624	-		GFF2345	0.36	+0.1
2,370,634	-		GFF2345	0.37	+1.0
2,370,638	+		GFF2345	0.38	-1.4
2,370,638	+		GFF2345	0.38	+1.3
2,370,646	-		GFF2345	0.38	+0.1
2,370,646	-		GFF2345	0.38	-1.8
2,370,648	+		GFF2345	0.39	-0.4
2,370,656	-		GFF2345	0.39	+0.2
2,370,656	-		GFF2345	0.39	+0.6
2,370,663	+		GFF2345	0.40	+1.3
2,370,671	+		GFF2345	0.41	+0.8
2,370,679	-		GFF2345	0.42	-0.7
2,370,679	-		GFF2345	0.42	+0.2
2,370,679	-		GFF2345	0.42	+2.1
2,370,679	-		GFF2345	0.42	-1.5
2,370,688	+		GFF2345	0.42	-0.2
2,370,688	+		GFF2345	0.42	-0.2
2,370,688	+		GFF2345	0.42	-1.1
2,370,692	+		GFF2345	0.43	-0.3
2,370,699	-		GFF2345	0.44	-0.2
2,370,701	-		GFF2345	0.44	+0.2
2,370,704	+		GFF2345	0.44	-0.3
2,370,704	+		GFF2345	0.44	-0.2
2,370,709	+		GFF2345	0.45	-1.2
2,370,712	-		GFF2345	0.45	+0.1
2,370,712	-		GFF2345	0.45	-0.9
2,370,714	+		GFF2345	0.45	+1.2
2,370,714	+		GFF2345	0.45	-0.7
2,370,717	-		GFF2345	0.45	-1.8
2,370,717	-		GFF2345	0.45	+0.7
2,370,717	-		GFF2345	0.45	+0.5
2,370,722	-		GFF2345	0.46	-0.3
2,370,722	-		GFF2345	0.46	+0.9
2,370,722	-		GFF2345	0.46	-0.6
2,370,738	-		GFF2345	0.47	+1.1
2,370,738	-		GFF2345	0.47	-0.7
2,370,747	+		GFF2345	0.48	-1.1
2,370,752	+		GFF2345	0.49	+0.7
2,370,755	+		GFF2345	0.49	+0.2
2,370,758	+		GFF2345	0.49	-0.7
2,370,760	-		GFF2345	0.50	-0.3
2,370,778	+		GFF2345	0.51	+0.4
2,370,778	+		GFF2345	0.51	-0.0
2,370,786	-		GFF2345	0.52	-0.1
2,370,796	+		GFF2345	0.53	+0.2
2,370,806	+		GFF2345	0.54	+1.0
2,370,806	-		GFF2345	0.54	+1.0
2,370,809	-		GFF2345	0.54	+0.6
2,370,823	+		GFF2345	0.56	-1.3
2,370,851	-		GFF2345	0.58	+0.9
2,370,863	+		GFF2345	0.60	-1.3
2,370,863	+		GFF2345	0.60	+0.7
2,370,863	+		GFF2345	0.60	+0.1
2,370,863	+		GFF2345	0.60	-1.8
2,370,871	-		GFF2345	0.60	+0.9
2,370,871	-		GFF2345	0.60	+0.9
2,370,898	-		GFF2345	0.63	+0.5
2,370,898	-		GFF2345	0.63	+0.3
2,370,925	-		GFF2345	0.66	-0.3
2,370,944	+		GFF2345	0.67	+0.1
2,370,949	+		GFF2345	0.68	-1.5
2,370,949	+		GFF2345	0.68	-1.5
2,370,949	+		GFF2345	0.68	+0.7
2,370,957	-		GFF2345	0.69	+0.9
2,370,957	-		GFF2345	0.69	+1.6
2,370,957	-		GFF2345	0.69	-1.9
2,370,957	-		GFF2345	0.69	-1.2
2,371,001	-		GFF2345	0.73	-1.9
2,371,002	-		GFF2345	0.73	+0.1
2,371,063	+		GFF2345	0.79	+0.4
2,371,118	+		GFF2345	0.84	-0.3
2,371,123	-		GFF2345	0.85	-0.4
2,371,141	-		GFF2345	0.87	-0.3
2,371,176	+				-0.1
2,371,176	+				+0.8
2,371,176	+				-0.3
2,371,176	+				+0.9
2,371,176	+				-0.5
2,371,184	-				+0.7
2,371,184	-				-1.5
2,371,184	-				-0.6
2,371,184	-				+0.7
2,371,184	-				+0.8
2,371,184	-				-1.0
2,371,211	+				+0.2
2,371,216	+				+1.0
2,371,219	-				-0.7
2,371,219	-				+0.2
2,371,235	+				+0.5
2,371,235	+				+0.4
2,371,235	+				-1.4
2,371,242	+				+0.6
2,371,242	+				+0.8
2,371,243	-				-0.9
2,371,243	-				+0.2
2,371,243	-				-1.3
2,371,250	-				+0.4
2,371,250	-				+0.2
2,371,250	-				+0.2
2,371,250	-				+0.1
2,371,272	-				+1.6
2,371,272	-				-0.4
2,371,280	-				-0.8
2,371,280	-				-2.1
2,371,284	+				+0.4
2,371,289	+				-0.1
2,371,289	+				+0.2
2,371,289	+				-2.1
2,371,289	+				-1.8
2,371,289	+				+0.2
2,371,289	+				-1.5
2,371,289	+				-0.3
2,371,289	+				-0.9
2,371,289	+				-0.2
2,371,292	-				+0.0
2,371,295	+				-0.3
2,371,295	+				-0.6
2,371,297	-				-0.6
2,371,297	-				-1.4
2,371,297	-				-1.5
2,371,297	-				+0.6
2,371,297	-				+0.7
2,371,297	-				-1.2
2,371,297	-				-1.8
2,371,297	-				+0.5
2,371,297	-				-0.6
2,371,297	-				-1.0
2,371,297	-				+0.9
2,371,297	-				+0.2
2,371,297	-				-1.4
2,371,297	-				-0.8
2,371,297	-				-0.2
2,371,300	+				+0.7
2,371,300	+				+0.4
2,371,300	+				+1.1
2,371,300	+				-1.4
2,371,300	+				+2.1
2,371,300	+				+0.4
2,371,300	+				+0.7
2,371,303	-				+0.8
2,371,303	-				+1.2
2,371,303	-				-0.5
2,371,303	-				+1.2
2,371,303	-				-0.4
2,371,303	-				-1.1
2,371,308	-				+1.6
2,371,308	-				-0.9
2,371,308	-				+0.9
2,371,308	-				-0.4
2,371,316	-				-0.2
2,371,339	+				-1.1
2,371,362	+				-0.7
2,371,362	+				+0.7
2,371,365	-				-0.4
2,371,367	+				-0.0
2,371,367	+				+0.4
2,371,367	+				-1.0
2,371,367	+				-1.6
2,371,375	-				-1.7
2,371,375	-				-1.2
2,371,375	-				-0.8
2,371,382	+				-1.3
2,371,382	+				+0.8
2,371,382	+				-0.3
2,371,385	-				+0.1
2,371,390	-				-0.3
2,371,390	-				+0.8
2,371,398	+				+0.7
2,371,408	+				-1.6
2,371,408	+				-0.9
2,371,425	+				-1.3
2,371,435	+				+1.1
2,371,441	-				-0.1
2,371,441	-				+0.3
2,371,443	+				+0.9
2,371,451	-				-1.5
2,371,463	+				-0.6
2,371,477	+		GFF2346	0.12	+1.4
2,371,485	-		GFF2346	0.13	-0.5
2,371,487	+		GFF2346	0.13	-0.1
2,371,556	+		GFF2346	0.23	-0.8
2,371,564	-		GFF2346	0.24	-0.9
2,371,576	+		GFF2346	0.26	-0.5
2,371,576	+		GFF2346	0.26	-0.9
2,371,577	+		GFF2346	0.26	+0.2
2,371,578	+		GFF2346	0.26	-0.1
2,371,578	+		GFF2346	0.26	-1.8
2,371,585	-		GFF2346	0.27	-0.5
2,371,592	-		GFF2346	0.28	-1.0
2,371,599	+		GFF2346	0.29	-0.5
2,371,618	-		GFF2346	0.32	-0.4
2,371,651	-		GFF2346	0.37	-0.2
2,371,653	+		GFF2346	0.37	-1.2
2,371,673	+		GFF2346	0.40	+0.7
2,371,673	+		GFF2346	0.40	+0.2
2,371,678	+		GFF2346	0.41	+0.6
2,371,681	-		GFF2346	0.41	+1.0
2,371,681	-		GFF2346	0.41	-0.9
2,371,681	-		GFF2346	0.41	-0.2
2,371,681	-		GFF2346	0.41	-1.5
2,371,681	-		GFF2346	0.41	+0.1
2,371,681	-		GFF2346	0.41	+0.1
2,371,686	-		GFF2346	0.42	-0.8
2,371,696	+		GFF2346	0.43	+0.9
2,371,704	+		GFF2346	0.45	-1.8
2,371,704	+		GFF2346	0.45	-2.4
2,371,704	+		GFF2346	0.45	-1.1
2,371,712	-		GFF2346	0.46	-0.3
2,371,716	+		GFF2346	0.46	+0.1
2,371,729	+		GFF2346	0.48	-0.6
2,371,764	-		GFF2346	0.53	-0.2
2,371,777	-		GFF2346	0.55	+1.1
2,371,778	-		GFF2346	0.55	+0.8
2,371,797	+		GFF2346	0.58	-0.1
2,371,849	+		GFF2346	0.65	+0.4
2,371,849	+		GFF2346	0.65	+1.0
2,371,857	-		GFF2346	0.67	-0.3
2,371,857	-		GFF2346	0.67	+0.5
2,371,879	+		GFF2346	0.70	+0.9
2,371,879	+		GFF2346	0.70	+0.4
2,371,890	+		GFF2346	0.71	+0.6
2,371,898	-		GFF2346	0.72	+0.1
2,371,931	+		GFF2346	0.77	-2.4
2,371,935	-		GFF2346	0.78	-1.5
2,371,935	-		GFF2346	0.78	-0.3
2,371,960	-		GFF2346	0.81	+0.1
2,371,974	+		GFF2346	0.83	+0.4
2,371,982	-		GFF2346	0.84	-1.2
2,371,982	-		GFF2346	0.84	-0.8
2,372,031	+				+0.4
2,372,031	+				-1.8
2,372,031	+				-0.6
2,372,031	+				+0.3
2,372,031	+				+0.3
2,372,031	+				-0.9
2,372,031	+				-0.1
2,372,031	+				+1.6
2,372,039	-				-0.6
2,372,039	-				-0.6
2,372,039	-				+0.3
2,372,039	-				+1.1
2,372,041	+				-0.3
2,372,078	-				-0.3
2,372,086	+				+1.0
2,372,091	-				+1.1
2,372,125	+				+0.4
2,372,128	-				-0.8
2,372,130	+				-2.6
2,372,130	+				-0.8
2,372,138	-				+0.2
2,372,142	-				-0.2
2,372,168	-		GFF2347	0.14	-0.2
2,372,174	-		GFF2347	0.15	+1.4
2,372,183	+		GFF2347	0.17	+0.1
2,372,210	-		GFF2347	0.22	+1.2
2,372,221	+		GFF2347	0.24	-0.8
2,372,229	-		GFF2347	0.25	-0.1
2,372,230	+		GFF2347	0.25	-1.8
2,372,242	-		GFF2347	0.27	+0.2
2,372,250	+		GFF2347	0.29	-1.4
2,372,250	+		GFF2347	0.29	+0.9
2,372,250	+		GFF2347	0.29	+1.8
2,372,258	-		GFF2347	0.30	+0.2
2,372,258	-		GFF2347	0.30	-1.0
2,372,258	-		GFF2347	0.30	+0.1
2,372,263	-		GFF2347	0.31	-1.0
2,372,267	+		GFF2347	0.32	-0.8
2,372,267	+		GFF2347	0.32	+0.3
2,372,267	+		GFF2347	0.32	+0.3
2,372,267	+		GFF2347	0.32	-2.1
2,372,267	+		GFF2347	0.32	-0.3
2,372,267	+		GFF2347	0.32	+0.1
2,372,267	+		GFF2347	0.32	+0.3
2,372,275	-		GFF2347	0.34	+0.3
2,372,275	-		GFF2347	0.34	-0.8