Strain Fitness in Sphingobium sp. HT1-2 around GFF2314

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,339,281	-		GFF2313	0.27	-1.3
2,339,310	-		GFF2313	0.29	+1.2
2,339,320	+		GFF2313	0.30	-1.8
2,339,320	-		GFF2313	0.30	-1.1
2,339,328	-		GFF2313	0.30	+0.9
2,339,328	-		GFF2313	0.30	-0.1
2,339,328	-		GFF2313	0.30	+0.7
2,339,357	+		GFF2313	0.32	+0.4
2,339,365	-		GFF2313	0.33	-2.0
2,339,402	+		GFF2313	0.36	+0.8
2,339,420	+		GFF2313	0.37	+1.2
2,339,467	+		GFF2313	0.40	+0.4
2,339,472	+		GFF2313	0.41	+0.7
2,339,485	-		GFF2313	0.42	-0.8
2,339,533	+		GFF2313	0.45	-1.2
2,339,535	+		GFF2313	0.45	-0.3
2,339,540	+		GFF2313	0.46	-0.9
2,339,545	+		GFF2313	0.46	-2.3
2,339,545	+		GFF2313	0.46	+0.9
2,339,547	+		GFF2313	0.46	+0.1
2,339,547	+		GFF2313	0.46	+0.3
2,339,547	-		GFF2313	0.46	+1.4
2,339,548	-		GFF2313	0.46	-0.2
2,339,553	+		GFF2313	0.47	-1.8
2,339,553	-		GFF2313	0.47	-0.8
2,339,553	-		GFF2313	0.47	-2.2
2,339,553	-		GFF2313	0.47	-0.2
2,339,553	-		GFF2313	0.47	+0.8
2,339,553	-		GFF2313	0.47	-0.5
2,339,555	-		GFF2313	0.47	+0.1
2,339,557	+		GFF2313	0.47	-1.2
2,339,570	-		GFF2313	0.48	+0.1
2,339,580	-		GFF2313	0.49	-2.5
2,339,582	+		GFF2313	0.49	+1.7
2,339,582	+		GFF2313	0.49	-1.6
2,339,582	+		GFF2313	0.49	-1.2
2,339,582	+		GFF2313	0.49	-0.4
2,339,582	+		GFF2313	0.49	-0.7
2,339,582	+		GFF2313	0.49	+0.9
2,339,583	+		GFF2313	0.49	-2.3
2,339,583	+		GFF2313	0.49	-1.3
2,339,583	+		GFF2313	0.49	-1.2
2,339,586	-		GFF2313	0.49	+0.4
2,339,590	-		GFF2313	0.49	+0.2
2,339,590	-		GFF2313	0.49	-0.9
2,339,590	-		GFF2313	0.49	-0.2
2,339,590	-		GFF2313	0.49	+1.2
2,339,590	-		GFF2313	0.49	+0.4
2,339,590	-		GFF2313	0.49	-0.5
2,339,590	-		GFF2313	0.49	-0.7
2,339,605	-		GFF2313	0.50	+0.7
2,339,624	-		GFF2313	0.52	-2.0
2,339,639	-		GFF2313	0.53	-1.1
2,339,643	+		GFF2313	0.53	-0.8
2,339,651	-		GFF2313	0.54	-0.3
2,339,695	+		GFF2313	0.57	-2.2
2,339,695	+		GFF2313	0.57	-0.8
2,339,703	-		GFF2313	0.58	+0.7
2,339,705	+		GFF2313	0.58	-0.5
2,339,708	-		GFF2313	0.58	+1.0
2,339,708	-		GFF2313	0.58	+1.0
2,339,713	-		GFF2313	0.58	-1.5
2,339,753	-		GFF2313	0.61	-0.1
2,339,758	-		GFF2313	0.62	+1.4
2,339,791	-		GFF2313	0.64	+0.2
2,339,826	+		GFF2313	0.67	-0.3
2,339,845	+		GFF2313	0.68	+0.7
2,339,845	-		GFF2313	0.68	+1.5
2,339,847	+		GFF2313	0.68	+0.9
2,339,852	-		GFF2313	0.69	-1.4
2,339,857	-		GFF2313	0.69	+1.7
2,339,865	+		GFF2313	0.70	-1.8
2,339,873	-		GFF2313	0.70	-0.4
2,339,905	+		GFF2313	0.72	-1.6
2,339,908	+		GFF2313	0.73	-0.9
2,339,925	+		GFF2313	0.74	+0.8
2,339,941	-		GFF2313	0.75	+0.6
2,339,961	-		GFF2313	0.77	+0.5
2,340,001	-		GFF2313	0.79	-2.3
2,340,034	+		GFF2313	0.82	-1.9
2,340,042	-		GFF2313	0.82	+1.0
2,340,060	+		GFF2313	0.84	+1.0
2,340,062	+		GFF2313	0.84	-1.4
2,340,080	+		GFF2313	0.85	-0.0
2,340,080	+		GFF2313	0.85	+0.4
2,340,085	+		GFF2313	0.86	+0.0
2,340,088	-		GFF2313	0.86	-0.4
2,340,093	-		GFF2313	0.86	+0.9
2,340,112	+		GFF2313	0.88	-0.0
2,340,112	+		GFF2313	0.88	-0.9
2,340,112	+		GFF2313	0.88	-1.5
2,340,120	-		GFF2313	0.88	+0.4
2,340,120	-		GFF2313	0.88	-0.5
2,340,126	-		GFF2313	0.89	+1.2
2,340,126	-		GFF2313	0.89	-0.2
2,340,126	-		GFF2313	0.89	-2.1
2,340,127	-		GFF2313	0.89	-1.1
2,340,174	-				-0.3
2,340,210	+				-0.5
2,340,232	+				+0.1
2,340,300	-				-0.9
2,340,300	-				-0.0
2,340,322	-				-0.6
2,340,339	+				-0.3
2,340,339	+				+0.1
2,340,339	+				-0.1
2,340,339	+				-1.1
2,340,341	-				-2.0
2,340,342	-				-0.7
2,340,344	+				-1.7
2,340,347	-				-0.9
2,340,347	-				-1.9
2,340,347	-				+0.2
2,340,347	-				-2.3
2,340,347	-				-0.2
2,340,347	-				-0.1
2,340,347	-				-1.1
2,340,359	-				-2.1
2,340,388	+				-1.0
2,340,388	+				-1.8
2,340,389	+				-0.7
2,340,397	-				-0.8
2,340,399	+				-0.2
2,340,424	+				-1.9
2,340,429	+				-1.0
2,340,437	-				+0.2
2,340,461	+				-0.2
2,340,461	+				-0.3
2,340,461	+				-1.0
2,340,461	+				-0.2
2,340,461	+				+1.2
2,340,461	+				+0.5
2,340,461	+				-0.4
2,340,469	-				+0.8
2,340,469	-				-0.5
2,340,469	-				+0.7
2,340,469	-				-1.0
2,340,469	-				-1.7
2,340,469	-				-1.3
2,340,469	-				+0.4
2,340,469	-				+1.5
2,340,469	-				+1.0
2,340,469	-				-0.2
2,340,469	-				-0.1
2,340,502	-		GFF2314	0.11	-3.2
2,340,508	-		GFF2314	0.11	-2.1
2,340,508	-		GFF2314	0.11	-0.1
2,340,508	-		GFF2314	0.11	+0.8
2,340,508	-		GFF2314	0.11	+0.2
2,340,508	-		GFF2314	0.11	-0.2
2,340,508	-		GFF2314	0.11	+0.1
2,340,513	-		GFF2314	0.11	-1.8
2,340,515	+		GFF2314	0.11	+0.5
2,340,517	-		GFF2314	0.11	-0.3
2,340,517	-		GFF2314	0.11	-1.3
2,340,526	+		GFF2314	0.12	+0.1
2,340,542	+		GFF2314	0.13	-0.1
2,340,542	+		GFF2314	0.13	+0.7
2,340,542	+		GFF2314	0.13	-1.6
2,340,547	+		GFF2314	0.13	-0.7
2,340,547	+		GFF2314	0.13	-0.8
2,340,547	+		GFF2314	0.13	-2.1
2,340,547	+		GFF2314	0.13	+0.3
2,340,547	+		GFF2314	0.13	+0.5
2,340,555	-		GFF2314	0.13	+0.5
2,340,555	-		GFF2314	0.13	-2.0
2,340,555	-		GFF2314	0.13	+0.6
2,340,555	-		GFF2314	0.13	+1.0
2,340,555	-		GFF2314	0.13	-0.1
2,340,555	-		GFF2314	0.13	-0.5
2,340,555	-		GFF2314	0.13	+0.2
2,340,555	-		GFF2314	0.13	-0.7
2,340,555	-		GFF2314	0.13	+1.3
2,340,560	-		GFF2314	0.13	-0.2
2,340,564	-		GFF2314	0.14	+0.5
2,340,635	+		GFF2314	0.17	+0.7
2,340,638	-		GFF2314	0.17	-1.5
2,340,658	-		GFF2314	0.18	-2.0
2,340,667	+		GFF2314	0.19	-2.3
2,340,669	+		GFF2314	0.19	-1.3
2,340,671	+		GFF2314	0.19	-1.5
2,340,692	-		GFF2314	0.20	-1.2
2,340,692	-		GFF2314	0.20	+0.1
2,340,700	-		GFF2314	0.20	+0.1
2,340,705	-		GFF2314	0.20	-0.6
2,340,734	-		GFF2314	0.22	+0.2
2,340,749	+		GFF2314	0.23	+0.7
2,340,752	-		GFF2314	0.23	-0.0
2,340,758	+		GFF2314	0.23	+0.2
2,340,758	+		GFF2314	0.23	-0.5
2,340,758	+		GFF2314	0.23	-0.5
2,340,766	-		GFF2314	0.23	-0.4
2,340,768	-		GFF2314	0.23	+0.2
2,340,818	-		GFF2314	0.26	+0.0
2,340,818	-		GFF2314	0.26	+0.7
2,340,823	-		GFF2314	0.26	-0.2
2,340,861	+		GFF2314	0.28	-1.1
2,340,867	-		GFF2314	0.28	+0.6
2,340,867	-		GFF2314	0.28	-0.6
2,340,960	-		GFF2314	0.33	-0.0
2,340,972	+		GFF2314	0.33	-0.2
2,340,973	+		GFF2314	0.33	+1.2
2,340,978	+		GFF2314	0.34	-0.1
2,341,008	+		GFF2314	0.35	+0.5
2,341,009	-		GFF2314	0.35	-0.3
2,341,061	-		GFF2314	0.38	+0.4
2,341,106	+		GFF2314	0.40	+0.3
2,341,109	-		GFF2314	0.40	-0.8
2,341,114	-		GFF2314	0.40	-2.1
2,341,132	+		GFF2314	0.41	-2.4
2,341,137	+		GFF2314	0.41	+0.4
2,341,150	-		GFF2314	0.42	+0.2
2,341,164	+		GFF2314	0.42	-2.5
2,341,165	+		GFF2314	0.43	-1.8
2,341,172	-		GFF2314	0.43	-0.3
2,341,174	+		GFF2314	0.43	+1.5
2,341,220	-		GFF2314	0.45	+0.2
2,341,221	+		GFF2314	0.45	-0.6
2,341,221	+		GFF2314	0.45	-0.8
2,341,221	+		GFF2314	0.45	-2.0
2,341,229	-		GFF2314	0.46	-0.3
2,341,237	-		GFF2314	0.46	-1.0
2,341,247	+		GFF2314	0.46	+0.1
2,341,251	+		GFF2314	0.47	-0.3
2,341,280	-		GFF2314	0.48	-0.6
2,341,290	-		GFF2314	0.49	+1.0
2,341,290	-		GFF2314	0.49	-2.5
2,341,300	+		GFF2314	0.49	+0.2
2,341,309	+		GFF2314	0.49	-0.6
2,341,322	-		GFF2314	0.50	-0.6
2,341,338	-		GFF2314	0.51	-0.5
2,341,338	-		GFF2314	0.51	-0.4
2,341,375	-		GFF2314	0.53	-2.7
2,341,375	-		GFF2314	0.53	+0.7
2,341,443	-		GFF2314	0.56	-0.3
2,341,455	-		GFF2314	0.56	+1.1
2,341,461	-		GFF2314	0.57	+1.0
2,341,490	+		GFF2314	0.58	-1.8
2,341,491	-		GFF2314	0.58	-1.4
2,341,498	-		GFF2314	0.59	+0.1
2,341,507	+		GFF2314	0.59	-1.1
2,341,509	+		GFF2314	0.59	-0.4
2,341,509	+		GFF2314	0.59	+0.8
2,341,514	+		GFF2314	0.59	-1.1
2,341,515	-		GFF2314	0.59	+0.5
2,341,527	-		GFF2314	0.60	+0.3
2,341,549	+		GFF2314	0.61	+1.0
2,341,583	-		GFF2314	0.63	-0.5
2,341,598	+		GFF2314	0.63	-0.7
2,341,622	+		GFF2314	0.64	-1.1
2,341,635	+		GFF2314	0.65	+0.3
2,341,639	-		GFF2314	0.65	+0.1
2,341,643	-		GFF2314	0.65	+0.1
2,341,658	-		GFF2314	0.66	-0.8
2,341,668	+		GFF2314	0.67	+0.6
2,341,726	+		GFF2314	0.69	-0.5
2,341,783	+		GFF2314	0.72	+0.6
2,341,784	+		GFF2314	0.72	+0.8
2,341,817	+		GFF2314	0.74	-1.1
2,341,817	+		GFF2314	0.74	+0.5
2,341,824	+		GFF2314	0.74	-0.1
2,341,832	-		GFF2314	0.75	-0.1
2,341,832	-		GFF2314	0.75	-0.3
2,341,858	-		GFF2314	0.76	+0.2
2,341,858	-		GFF2314	0.76	-0.6
2,341,858	-		GFF2314	0.76	-2.2
2,341,898	+		GFF2314	0.78	-0.5
2,341,898	+		GFF2314	0.78	-0.9
2,341,898	+		GFF2314	0.78	+0.7
2,341,898	+		GFF2314	0.78	+0.4
2,341,898	+		GFF2314	0.78	-0.9
2,341,898	+		GFF2314	0.78	+1.0
2,341,906	-		GFF2314	0.78	-0.9
2,341,906	-		GFF2314	0.78	-0.9
2,341,912	+		GFF2314	0.78	-0.8
2,341,978	+		GFF2314	0.82	-0.5
2,341,986	-		GFF2314	0.82	+0.7
2,341,991	-		GFF2314	0.82	+0.9
2,342,001	-		GFF2314	0.83	-1.0
2,342,029	-		GFF2314	0.84	+0.7
2,342,035	-		GFF2314	0.84	+0.4
2,342,057	+		GFF2314	0.85	-0.8
2,342,080	-		GFF2314	0.86	-0.2
2,342,105	-		GFF2314	0.88	+0.7
2,342,105	-		GFF2314	0.88	+1.1
2,342,105	-		GFF2314	0.88	+0.7
2,342,120	+		GFF2314	0.88	+0.0
2,342,130	+		GFF2314	0.89	+0.7
2,342,173	-				-0.3
2,342,222	+				-0.6
2,342,239	+				+0.1
2,342,242	-				-2.0
2,342,288	-				-0.8
2,342,297	+				+0.5
2,342,302	+				-0.2
2,342,302	+				+0.7
2,342,310	-				+0.7
2,342,315	-				+0.1
2,342,319	+				+0.6
2,342,327	-				-1.0
2,342,327	-				-1.0
2,342,334	-				-1.8
2,342,357	+				-0.6
2,342,357	+				+0.4
2,342,365	-				-0.9
2,342,365	-				-0.3
2,342,373	-				-1.1
2,342,388	+				+1.2
2,342,396	-				+0.4
2,342,396	-				-0.7
2,342,399	+				-0.3
2,342,402	-				-0.8
2,342,409	+				+0.3
2,342,409	+				-0.8
2,342,409	+				-0.1
2,342,417	-				+0.3
2,342,417	-				+0.0
2,342,436	-				-0.6
2,342,442	+				+0.8
2,342,477	-				-0.8
2,342,511	+		GFF2315	0.10	+1.1
2,342,519	+		GFF2315	0.11	+0.7
2,342,522	-		GFF2315	0.11	+0.2
2,342,522	-		GFF2315	0.11	+0.5
2,342,553	-		GFF2315	0.13	+0.8
2,342,573	-		GFF2315	0.14	-0.1
2,342,582	+		GFF2315	0.15	-0.0
2,342,584	+		GFF2315	0.15	+0.1
2,342,592	-		GFF2315	0.16	+1.9
2,342,601	+		GFF2315	0.16	+0.9
2,342,601	-		GFF2315	0.16	+0.6
2,342,633	+		GFF2315	0.19	+0.9
2,342,635	-		GFF2315	0.19	+0.6
2,342,636	+		GFF2315	0.19	+0.7
2,342,645	+		GFF2315	0.20	-0.9
2,342,653	-		GFF2315	0.20	-0.6
2,342,653	-		GFF2315	0.20	-0.9
2,342,655	+		GFF2315	0.20	+2.0
2,342,655	+		GFF2315	0.20	+1.1
2,342,655	+		GFF2315	0.20	-0.4
2,342,655	+		GFF2315	0.20	-0.4
2,342,655	+		GFF2315	0.20	+0.2
2,342,655	+		GFF2315	0.20	+1.0
2,342,663	-		GFF2315	0.21	-1.8
2,342,663	-		GFF2315	0.21	-0.3
2,342,663	-		GFF2315	0.21	-0.3
2,342,663	-		GFF2315	0.21	-0.6
2,342,663	-		GFF2315	0.21	-0.6
2,342,663	-		GFF2315	0.21	+0.1
2,342,663	-		GFF2315	0.21	-0.5
2,342,663	-		GFF2315	0.21	-0.3
2,342,663	-		GFF2315	0.21	-0.9
2,342,663	-		GFF2315	0.21	+0.2
2,342,668	-		GFF2315	0.21	-2.3
2,342,671	-		GFF2315	0.22	+0.4
2,342,679	+		GFF2315	0.22	-0.2
2,342,697	+		GFF2315	0.23	-0.4
2,342,703	-		GFF2315	0.24	-1.2
2,342,703	-		GFF2315	0.24	+0.2
2,342,710	-		GFF2315	0.24	-0.7
2,342,727	+		GFF2315	0.26	+1.5
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