Strain Fitness in Sphingobium sp. HT1-2 around GFF2307

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,330,532	-		GFF2304	0.33	-1.3
2,330,537	-		GFF2304	0.34	+1.2
2,330,537	-		GFF2304	0.34	+0.4
2,330,565	+		GFF2304	0.39	-0.4
2,330,585	-		GFF2304	0.43	+0.8
2,330,656	-		GFF2304	0.56	+0.1
2,330,663	+		GFF2304	0.58	-0.8
2,330,665	-		GFF2304	0.58	+1.1
2,330,665	-		GFF2304	0.58	-1.0
2,330,665	-		GFF2304	0.58	+1.1
2,330,669	+		GFF2304	0.59	+0.1
2,330,675	+		GFF2304	0.60	+0.0
2,330,675	+		GFF2304	0.60	+0.9
2,330,722	+		GFF2304	0.69	-0.9
2,330,728	-		GFF2304	0.70	-0.2
2,330,730	+		GFF2304	0.70	+1.6
2,330,730	+		GFF2304	0.70	+0.1
2,330,738	-		GFF2304	0.72	-2.7
2,330,747	+		GFF2304	0.73	+0.6
2,330,765	+		GFF2304	0.77	-0.2
2,330,765	+		GFF2304	0.77	+1.0
2,330,791	+		GFF2304	0.81	+0.6
2,330,791	+		GFF2304	0.81	+0.3
2,330,791	+		GFF2304	0.81	-0.0
2,330,791	+		GFF2304	0.81	+0.4
2,330,791	+		GFF2304	0.81	-1.0
2,330,796	+		GFF2304	0.82	-0.5
2,330,797	-		GFF2304	0.82	-1.1
2,330,799	-		GFF2304	0.83	+0.9
2,330,799	-		GFF2304	0.83	+0.8
2,330,799	-		GFF2304	0.83	+0.1
2,330,799	-		GFF2304	0.83	+2.1
2,330,799	-		GFF2304	0.83	+0.7
2,330,799	-		GFF2304	0.83	-1.2
2,330,826	+		GFF2304	0.88	+0.4
2,330,826	+		GFF2304	0.88	+1.1
2,330,828	+		GFF2304	0.88	+0.3
2,330,834	+		GFF2304	0.89	-0.5
2,330,834	+		GFF2304	0.89	+1.1
2,330,839	+				+0.8
2,330,839	+				-3.1
2,330,842	-				-0.5
2,330,842	-				-1.3
2,330,847	-				+1.2
2,330,847	-				-1.3
2,330,867	-				+0.4
2,330,898	+				-1.8
2,330,926	+				-0.6
2,330,970	-		GFF2305	0.26	-0.1
2,331,032	-		GFF2305	0.81	-0.6
2,331,034	+		GFF2305	0.82	+0.4
2,331,034	+		GFF2305	0.82	-1.1
2,331,034	+		GFF2305	0.82	+0.4
2,331,042	-				+0.0
2,331,083	+				-1.2
2,331,109	+				-1.3
2,331,139	+				+0.3
2,331,147	-				+1.5
2,331,147	-				+0.9
2,331,147	-				-1.1
2,331,147	-				+0.5
2,331,147	-				+0.8
2,331,156	+				-2.2
2,331,167	+		GFF2306	0.13	-1.1
2,331,167	+		GFF2306	0.13	-1.2
2,331,172	+		GFF2306	0.16	+0.8
2,331,172	+		GFF2306	0.16	-0.8
2,331,177	+		GFF2306	0.18	-0.3
2,331,177	+		GFF2306	0.18	-1.4
2,331,180	-		GFF2306	0.20	-0.0
2,331,185	-		GFF2306	0.22	-0.4
2,331,187	+		GFF2306	0.23	+1.7
2,331,187	+		GFF2306	0.23	-0.4
2,331,187	+		GFF2306	0.23	-0.2
2,331,187	+		GFF2306	0.23	+1.2
2,331,187	+		GFF2306	0.23	-0.2
2,331,195	-		GFF2306	0.27	+1.2
2,331,195	-		GFF2306	0.27	+0.4
2,331,195	-		GFF2306	0.27	+1.0
2,331,195	-		GFF2306	0.27	-0.4
2,331,197	+		GFF2306	0.28	-0.5
2,331,230	-		GFF2306	0.45	+0.4
2,331,244	+		GFF2306	0.52	+0.3
2,331,264	+		GFF2306	0.62	+1.0
2,331,319	+				+0.4
2,331,341	+				-1.7
2,331,341	-				+0.7
2,331,346	+				-0.1
2,331,346	+				+0.0
2,331,346	+				+0.6
2,331,348	+				-0.3
2,331,354	-				+0.4
2,331,456	+				+0.1
2,331,458	+				+0.7
2,331,481	+				-0.7
2,331,481	+				+1.0
2,331,506	+				+1.4
2,331,531	+				+0.6
2,331,535	-				+0.5
2,331,539	-				+0.3
2,331,540	-				-1.7
2,331,613	+		GFF2307	0.11	+1.0
2,331,645	-		GFF2307	0.13	+0.4
2,331,666	+		GFF2307	0.15	+0.7
2,331,689	+		GFF2307	0.17	-0.8
2,331,689	+		GFF2307	0.17	+0.4
2,331,697	-		GFF2307	0.17	+0.8
2,331,697	-		GFF2307	0.17	-0.9
2,331,697	-		GFF2307	0.17	-0.5
2,331,723	+		GFF2307	0.19	+0.2
2,331,726	-		GFF2307	0.20	+0.3
2,331,731	-		GFF2307	0.20	-0.8
2,331,745	+		GFF2307	0.21	-2.2
2,331,753	-		GFF2307	0.22	+0.3
2,331,758	+		GFF2307	0.22	+1.7
2,331,758	+		GFF2307	0.22	-0.1
2,331,784	-		GFF2307	0.24	-0.5
2,331,800	+		GFF2307	0.25	+0.0
2,331,824	-		GFF2307	0.27	-0.5
2,331,829	-		GFF2307	0.27	+0.7
2,331,867	+		GFF2307	0.30	+0.1
2,331,875	-		GFF2307	0.31	-0.2
2,331,875	-		GFF2307	0.31	+0.7
2,331,927	+		GFF2307	0.35	+0.7
2,331,959	+		GFF2307	0.37	+1.2
2,331,969	+		GFF2307	0.38	+0.8
2,331,972	-		GFF2307	0.38	+1.6
2,331,977	-		GFF2307	0.39	-0.9
2,332,009	-		GFF2307	0.41	-0.8
2,332,014	-		GFF2307	0.42	+0.9
2,332,057	+		GFF2307	0.45	-1.1
2,332,090	+		GFF2307	0.47	-0.6
2,332,127	-		GFF2307	0.50	+2.2
2,332,127	-		GFF2307	0.50	+0.8
2,332,176	-		GFF2307	0.54	-1.0
2,332,176	-		GFF2307	0.54	-1.6
2,332,176	-		GFF2307	0.54	-0.1
2,332,204	-		GFF2307	0.56	-0.6
2,332,248	+		GFF2307	0.59	-0.3
2,332,266	+		GFF2307	0.61	-1.5
2,332,268	+		GFF2307	0.61	+0.4
2,332,287	+		GFF2307	0.62	+1.5
2,332,329	-		GFF2307	0.66	-2.0
2,332,329	-		GFF2307	0.66	+1.9
2,332,377	+		GFF2307	0.69	+0.8
2,332,385	-		GFF2307	0.70	+0.1
2,332,385	-		GFF2307	0.70	+0.2
2,332,408	+		GFF2307	0.72	-2.5
2,332,450	+		GFF2307	0.75	-0.5
2,332,458	-		GFF2307	0.75	-0.1
2,332,476	+		GFF2307	0.77	-0.3
2,332,535	-		GFF2307	0.81	-0.5
2,332,540	-		GFF2307	0.82	-0.2
2,332,658	+				-0.2
2,332,658	+				-1.1
2,332,666	-				-0.8
2,332,666	-				+0.3
2,332,666	-				-0.2
2,332,666	-				+0.5
2,332,704	+				+0.6
2,332,704	+				-0.3
2,332,704	+				+0.8
2,332,704	+				-1.6
2,332,704	+				-0.2
2,332,705	+				-0.2
2,332,705	+				-0.2
2,332,705	+				-0.9
2,332,705	+				+0.8
2,332,705	+				+0.3
2,332,712	-				-0.7
2,332,712	-				-1.6
2,332,713	-				-0.1
2,332,713	-				+0.5
2,332,723	+				-0.4
2,332,735	-				+0.2
2,332,745	-				-0.5
2,332,827	-				+0.3
2,332,864	-				-0.2
2,332,872	+				-0.9
2,332,880	-				+0.7
2,332,891	+				+0.9
2,332,891	+				-1.2
2,332,899	+				-0.1
2,332,909	-				+1.0
2,332,914	+				+0.0
2,332,914	+				-1.8
2,332,932	-		GFF2308	0.11	-0.1
2,332,948	+		GFF2308	0.12	-0.1
2,332,948	+		GFF2308	0.12	+1.2
2,332,974	-		GFF2308	0.14	+0.9
2,332,974	-		GFF2308	0.14	-0.4
2,332,979	-		GFF2308	0.14	-0.5
2,332,984	-		GFF2308	0.15	+0.4
2,333,017	-		GFF2308	0.17	+1.3
2,333,033	+		GFF2308	0.18	+0.0
2,333,057	+		GFF2308	0.20	-1.6
2,333,099	+		GFF2308	0.23	-0.7
2,333,120	-		GFF2308	0.24	+0.4
2,333,207	+		GFF2308	0.31	+0.0
2,333,258	+		GFF2308	0.34	+0.3
2,333,258	+		GFF2308	0.34	+0.1
2,333,258	+		GFF2308	0.34	+0.4
2,333,266	-		GFF2308	0.35	-0.6
2,333,279	+		GFF2308	0.36	-0.1
2,333,281	-		GFF2308	0.36	-0.0
2,333,287	+		GFF2308	0.36	+0.7
2,333,287	+		GFF2308	0.36	-2.0
2,333,294	+		GFF2308	0.37	+0.6
2,333,294	+		GFF2308	0.37	-0.2
2,333,295	-		GFF2308	0.37	-1.1
2,333,317	-		GFF2308	0.38	+1.7
2,333,327	-		GFF2308	0.39	-0.2
2,333,360	-		GFF2308	0.41	+0.7
2,333,367	-		GFF2308	0.42	-1.0
2,333,379	+		GFF2308	0.43	-1.2
2,333,401	-		GFF2308	0.44	-0.7
2,333,411	+		GFF2308	0.45	-0.8
2,333,419	-		GFF2308	0.46	+0.3
2,333,419	-		GFF2308	0.46	-0.7
2,333,455	+		GFF2308	0.48	-0.5
2,333,498	+		GFF2308	0.51	-0.2
2,333,508	+		GFF2308	0.52	-0.1
2,333,515	+		GFF2308	0.52	-0.6
2,333,566	-		GFF2308	0.56	+0.3
2,333,609	-		GFF2308	0.59	-0.4
2,333,609	-		GFF2308	0.59	+0.9
2,333,609	-		GFF2308	0.59	+0.6
2,333,614	-		GFF2308	0.60	-0.8
2,333,614	-		GFF2308	0.60	-0.4
2,333,666	+		GFF2308	0.63	+0.7
2,333,674	-		GFF2308	0.64	+0.4
2,333,705	+		GFF2308	0.66	-1.6
2,333,737	+		GFF2308	0.68	-0.4
2,333,737	-		GFF2308	0.68	-0.3
2,333,745	-		GFF2308	0.69	+0.9
2,333,747	+		GFF2308	0.69	-0.6
2,333,750	-		GFF2308	0.69	-1.4
2,333,750	-		GFF2308	0.69	-0.7
2,333,755	-		GFF2308	0.70	+1.0
2,333,757	-		GFF2308	0.70	-1.5
2,333,762	-		GFF2308	0.70	-0.9