Strain Fitness in Sphingobium sp. HT1-2 around GFF2295

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,320,653	-		GFF2293	0.75	+0.7
2,320,666	-		GFF2293	0.76	+0.8
2,320,754	+		GFF2293	0.88	-2.3
2,320,754	+		GFF2293	0.88	-0.8
2,320,762	-		GFF2293	0.90	+0.8
2,320,794	+				-2.3
2,320,802	-				-0.9
2,320,802	-				-0.1
2,320,802	-				+1.2
2,320,802	-				+0.8
2,320,817	-				-0.8
2,320,896	-				-1.7
2,320,912	-				-0.8
2,320,912	-				-2.3
2,320,977	-				-1.3
2,320,994	-				+0.2
2,321,006	-				-0.2
2,321,025	-				-1.9
2,321,035	-		GFF2294	0.11	-1.9
2,321,048	-		GFF2294	0.13	-0.5
2,321,073	+		GFF2294	0.17	+0.2
2,321,073	+		GFF2294	0.17	-0.0
2,321,073	+		GFF2294	0.17	-3.1
2,321,081	-		GFF2294	0.18	-0.6
2,321,081	-		GFF2294	0.18	+1.0
2,321,081	-		GFF2294	0.18	-0.4
2,321,081	-		GFF2294	0.18	-0.0
2,321,101	+		GFF2294	0.21	-0.9
2,321,130	+		GFF2294	0.25	-0.8
2,321,142	-		GFF2294	0.27	-1.4
2,321,180	+		GFF2294	0.32	+1.2
2,321,180	+		GFF2294	0.32	+0.4
2,321,188	-		GFF2294	0.34	-0.6
2,321,188	-		GFF2294	0.34	+0.4
2,321,202	+		GFF2294	0.36	+1.1
2,321,210	-		GFF2294	0.37	-0.2
2,321,213	-		GFF2294	0.37	-0.3
2,321,229	+		GFF2294	0.40	+0.3
2,321,233	-		GFF2294	0.40	+0.7
2,321,254	-		GFF2294	0.43	+1.4
2,321,260	-		GFF2294	0.44	+0.0
2,321,262	+		GFF2294	0.45	-1.8
2,321,262	+		GFF2294	0.45	-0.4
2,321,270	-		GFF2294	0.46	-0.1
2,321,276	-		GFF2294	0.47	-0.1
2,321,278	+		GFF2294	0.47	-0.0
2,321,278	+		GFF2294	0.47	-2.3
2,321,278	+		GFF2294	0.47	-1.6
2,321,278	+		GFF2294	0.47	+0.5
2,321,278	+		GFF2294	0.47	-1.2
2,321,283	+		GFF2294	0.48	+0.7
2,321,283	+		GFF2294	0.48	+0.1
2,321,283	+		GFF2294	0.48	-1.2
2,321,283	+		GFF2294	0.48	+0.3
2,321,283	+		GFF2294	0.48	+0.5
2,321,283	+		GFF2294	0.48	-0.1
2,321,283	+		GFF2294	0.48	-0.9
2,321,283	+		GFF2294	0.48	-1.8
2,321,283	+		GFF2294	0.48	-1.3
2,321,283	+		GFF2294	0.48	+0.4
2,321,283	+		GFF2294	0.48	-0.5
2,321,283	+		GFF2294	0.48	-0.8
2,321,283	+		GFF2294	0.48	+0.6
2,321,283	+		GFF2294	0.48	+0.5
2,321,283	+		GFF2294	0.48	-1.3
2,321,283	+		GFF2294	0.48	-1.3
2,321,283	+		GFF2294	0.48	+1.2
2,321,283	+		GFF2294	0.48	-0.8
2,321,286	-		GFF2294	0.48	+0.9
2,321,286	-		GFF2294	0.48	+1.6
2,321,286	-		GFF2294	0.48	-1.3
2,321,286	-		GFF2294	0.48	+0.0
2,321,291	-		GFF2294	0.49	-0.2
2,321,291	-		GFF2294	0.49	+1.2
2,321,291	-		GFF2294	0.49	+0.8
2,321,291	-		GFF2294	0.49	-1.8
2,321,291	-		GFF2294	0.49	+0.1
2,321,291	-		GFF2294	0.49	+0.2
2,321,291	-		GFF2294	0.49	-0.0
2,321,291	-		GFF2294	0.49	-0.1
2,321,291	-		GFF2294	0.49	-0.7
2,321,291	-		GFF2294	0.49	-0.7
2,321,291	-		GFF2294	0.49	-0.3
2,321,291	-		GFF2294	0.49	-0.2
2,321,291	-		GFF2294	0.49	+0.0
2,321,291	-		GFF2294	0.49	-0.2
2,321,291	-		GFF2294	0.49	+1.6
2,321,291	-		GFF2294	0.49	+0.2
2,321,291	-		GFF2294	0.49	-0.1
2,321,291	-		GFF2294	0.49	+0.8
2,321,296	-		GFF2294	0.50	-1.0
2,321,296	-		GFF2294	0.50	+0.4
2,321,300	+		GFF2294	0.50	-0.8
2,321,316	+		GFF2294	0.53	-0.3
2,321,316	+		GFF2294	0.53	-1.1
2,321,324	-		GFF2294	0.54	+0.0
2,321,335	+		GFF2294	0.56	-1.4
2,321,350	-		GFF2294	0.58	+1.0
2,321,411	-		GFF2294	0.67	-1.3
2,321,419	+		GFF2294	0.68	-0.3
2,321,429	+		GFF2294	0.69	+0.4
2,321,437	-		GFF2294	0.71	+0.4
2,321,439	+		GFF2294	0.71	+0.1
2,321,439	+		GFF2294	0.71	-1.2
2,321,445	-		GFF2294	0.72	-0.6
2,321,445	-		GFF2294	0.72	-0.5
2,321,446	+		GFF2294	0.72	-1.2
2,321,447	-		GFF2294	0.72	+0.2
2,321,458	-		GFF2294	0.74	-0.2
2,321,458	-		GFF2294	0.74	-1.9
2,321,469	+		GFF2294	0.75	-1.8
2,321,469	+		GFF2294	0.75	-0.8
2,321,469	+		GFF2294	0.75	-0.5
2,321,469	-		GFF2294	0.75	+0.7
2,321,492	-		GFF2294	0.79	-0.3
2,321,501	-		GFF2294	0.80	+0.2
2,321,511	-		GFF2294	0.82	-1.3
2,321,518	-		GFF2294	0.83	-0.3
2,321,521	-		GFF2294	0.83	-0.3
2,321,534	+		GFF2294	0.85	+0.6
2,321,541	+		GFF2294	0.86	+0.2
2,321,561	-		GFF2294	0.89	-0.6
2,321,564	-		GFF2294	0.90	+0.9
2,321,575	+				+0.5
2,321,575	+				-1.6
2,321,583	-				-2.1
2,321,583	-				+1.3
2,321,584	-				-0.1
2,321,584	-				+1.1
2,321,585	-				-1.2
2,321,586	+				-0.2
2,321,595	+				-2.0
2,321,597	+				-0.5
2,321,605	+				-0.8
2,321,628	+				-1.3
2,321,628	+				+0.2
2,321,640	+				+0.9
2,321,671	+		GFF2295	0.16	-0.3
2,321,672	+		GFF2295	0.16	-0.5
2,321,678	+		GFF2295	0.19	+0.9
2,321,678	+		GFF2295	0.19	-0.6
2,321,685	-		GFF2295	0.21	-1.0
2,321,696	-		GFF2295	0.26	-1.2
2,321,696	-		GFF2295	0.26	-0.8
2,321,699	+		GFF2295	0.27	-0.9
2,321,705	-		GFF2295	0.29	-0.2
2,321,707	-		GFF2295	0.30	-1.3
2,321,715	-		GFF2295	0.33	-0.3
2,321,735	+		GFF2295	0.41	-0.1
2,321,736	+		GFF2295	0.41	-0.8
2,321,738	+		GFF2295	0.42	-0.4
2,321,743	+		GFF2295	0.44	-2.3
2,321,755	-		GFF2295	0.48	+0.3
2,321,766	+		GFF2295	0.53	-0.5
2,321,801	-		GFF2295	0.66	+0.4
2,321,906	+				-0.9
2,321,914	-				-0.1
2,321,936	+				+0.3
2,321,942	-				-0.0
2,321,944	-				-1.0
2,321,944	-				-2.0
2,321,949	-				-0.6
2,321,973	-				-0.1
2,321,978	-				+0.4
2,321,987	+				+0.9
2,321,993	-				+0.8
2,321,999	+				-0.1
2,322,063	+				+0.5
2,322,071	-				-0.5
2,322,071	-				+0.5
2,322,071	-				+0.4
2,322,090	+				-0.3
2,322,113	-				-0.3
2,322,116	+				-0.6
2,322,116	+				+0.5
2,322,123	-				-0.1
2,322,124	-				+0.4
2,322,131	-				-0.5
2,322,134	-				+1.0
2,322,158	-				+0.6
2,322,180	+				-0.9
2,322,190	+				+0.1
2,322,198	-				-1.6
2,322,198	-				-0.1
2,322,200	-				-2.2
2,322,200	-				+1.8
2,322,212	-				-1.5
2,322,212	-				+0.5
2,322,220	-				-0.0
2,322,220	-				-1.3
2,322,227	+				-1.8
2,322,227	+				-1.6
2,322,235	-		GFF2296	0.10	+1.0
2,322,279	+		GFF2296	0.12	+0.9
2,322,285	+		GFF2296	0.12	-0.9
2,322,292	-		GFF2296	0.12	-0.0
2,322,292	-		GFF2296	0.12	-0.3
2,322,292	-		GFF2296	0.12	-0.7
2,322,292	-		GFF2296	0.12	-0.7
2,322,296	+		GFF2296	0.12	-0.2
2,322,345	-		GFF2296	0.14	+0.8
2,322,367	+		GFF2296	0.15	+1.1
2,322,375	-		GFF2296	0.15	+0.7
2,322,375	-		GFF2296	0.15	-0.2
2,322,375	-		GFF2296	0.15	+0.1
2,322,375	-		GFF2296	0.15	+0.5
2,322,393	+		GFF2296	0.16	-0.0
2,322,396	+		GFF2296	0.16	-1.2
2,322,396	+		GFF2296	0.16	+0.2
2,322,397	+		GFF2296	0.16	+1.2
2,322,403	+		GFF2296	0.16	+0.6
2,322,404	-		GFF2296	0.16	+0.2
2,322,405	-		GFF2296	0.16	+0.2
2,322,437	-		GFF2296	0.18	-0.6
2,322,486	+		GFF2296	0.19	+0.5
2,322,486	+		GFF2296	0.19	-1.3
2,322,486	+		GFF2296	0.19	-0.3
2,322,486	+		GFF2296	0.19	+0.8
2,322,486	-		GFF2296	0.19	+0.1
2,322,494	-		GFF2296	0.20	-0.9
2,322,494	-		GFF2296	0.20	-0.3
2,322,494	-		GFF2296	0.20	-0.3
2,322,515	+		GFF2296	0.21	-0.8
2,322,523	+		GFF2296	0.21	+0.2
2,322,523	-		GFF2296	0.21	+0.2
2,322,523	-		GFF2296	0.21	+1.3
2,322,525	+		GFF2296	0.21	+0.1
2,322,574	+		GFF2296	0.23	-0.2
2,322,609	-		GFF2296	0.24	+0.3
2,322,611	+		GFF2296	0.24	-0.3
2,322,611	+		GFF2296	0.24	+0.2
2,322,614	-		GFF2296	0.24	+0.5
2,322,619	-		GFF2296	0.24	+0.9
2,322,647	+		GFF2296	0.25	+0.0
2,322,653	-		GFF2296	0.26	-1.7
2,322,674	+		GFF2296	0.26	+0.0
2,322,674	+		GFF2296	0.26	+1.2
2,322,682	+		GFF2296	0.27	+0.1
2,322,682	+		GFF2296	0.27	+1.2
2,322,682	-		GFF2296	0.27	-1.7
2,322,687	+		GFF2296	0.27	-0.6
2,322,690	-		GFF2296	0.27	+0.7
2,322,690	-		GFF2296	0.27	-0.4
2,322,690	-		GFF2296	0.27	-0.5
2,322,695	-		GFF2296	0.27	-0.5
2,322,703	-		GFF2296	0.28	+0.4
2,322,723	+		GFF2296	0.28	-0.2
2,322,740	+		GFF2296	0.29	-0.2
2,322,741	+		GFF2296	0.29	+2.0
2,322,748	-		GFF2296	0.29	+0.8
2,322,772	-		GFF2296	0.30	-1.8
2,322,783	+		GFF2296	0.31	-0.9
2,322,790	+		GFF2296	0.31	+0.2
2,322,790	+		GFF2296	0.31	-0.7
2,322,798	-		GFF2296	0.31	-1.8
2,322,808	-		GFF2296	0.31	+1.2
2,322,822	-		GFF2296	0.32	-0.0
2,322,846	-		GFF2296	0.33	+0.0
2,322,851	-		GFF2296	0.33	-0.7
2,322,863	+		GFF2296	0.34	-0.6
2,322,874	+		GFF2296	0.34	-0.8
2,322,882	-		GFF2296	0.34	+0.2
2,322,884	+		GFF2296	0.34	+0.3
2,322,884	+		GFF2296	0.34	-1.0