Strain Fitness in Sphingobium sp. HT1-2 around GFF2291

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,316,279	-		GFF2290	0.30	+0.7
2,316,288	+		GFF2290	0.31	-0.5
2,316,290	+		GFF2290	0.31	+0.3
2,316,290	-		GFF2290	0.31	+0.8
2,316,291	-		GFF2290	0.31	+1.2
2,316,291	-		GFF2290	0.31	+1.1
2,316,339	+		GFF2290	0.35	+0.5
2,316,398	-		GFF2290	0.40	-0.5
2,316,402	-		GFF2290	0.40	-0.4
2,316,402	-		GFF2290	0.40	-1.2
2,316,423	-		GFF2290	0.42	+0.2
2,316,431	-		GFF2290	0.42	-2.1
2,316,445	+		GFF2290	0.44	+0.5
2,316,445	+		GFF2290	0.44	-1.2
2,316,445	+		GFF2290	0.44	+0.2
2,316,453	-		GFF2290	0.44	-0.1
2,316,453	-		GFF2290	0.44	+0.7
2,316,453	-		GFF2290	0.44	-0.1
2,316,473	+		GFF2290	0.46	+0.6
2,316,509	-		GFF2290	0.49	-0.2
2,316,546	-		GFF2290	0.52	-0.6
2,316,555	+		GFF2290	0.52	+0.4
2,316,623	+		GFF2290	0.58	+0.8
2,316,646	+		GFF2290	0.60	+0.2
2,316,658	+		GFF2290	0.61	-0.3
2,316,668	+		GFF2290	0.62	-1.0
2,316,676	-		GFF2290	0.62	-1.8
2,316,676	-		GFF2290	0.62	+0.5
2,316,683	+		GFF2290	0.63	+1.7
2,316,703	+		GFF2290	0.64	-0.0
2,316,746	+		GFF2290	0.68	+0.1
2,316,746	+		GFF2290	0.68	+0.0
2,316,754	-		GFF2290	0.68	-0.6
2,316,754	-		GFF2290	0.68	+0.0
2,316,764	-		GFF2290	0.69	-0.2
2,316,771	-		GFF2290	0.70	+0.8
2,316,803	+		GFF2290	0.72	-0.4
2,316,807	+		GFF2290	0.73	-1.1
2,316,812	+		GFF2290	0.73	-1.0
2,316,820	+		GFF2290	0.74	-0.3
2,316,820	-		GFF2290	0.74	-1.8
2,316,822	+		GFF2290	0.74	+0.2
2,316,822	+		GFF2290	0.74	+0.4
2,316,828	-		GFF2290	0.74	-2.1
2,316,828	-		GFF2290	0.74	-0.3
2,316,830	-		GFF2290	0.75	+0.7
2,316,834	+		GFF2290	0.75	+0.7
2,316,843	-		GFF2290	0.76	+0.2
2,316,876	+		GFF2290	0.78	+1.6
2,316,886	+		GFF2290	0.79	-0.6
2,316,886	-		GFF2290	0.79	+0.3
2,316,894	-		GFF2290	0.80	-0.8
2,316,979	+		GFF2290	0.87	-0.0
2,316,987	-		GFF2290	0.87	-0.7
2,316,987	-		GFF2290	0.87	+0.3
2,316,987	-		GFF2290	0.87	+0.3
2,316,987	-		GFF2290	0.87	-1.5
2,316,998	-		GFF2290	0.88	-0.7
2,317,028	+				-0.3
2,317,033	+				+0.5
2,317,035	+				-0.6
2,317,037	+				-0.8
2,317,041	-				+0.4
2,317,047	+				-0.8
2,317,050	-				-0.0
2,317,057	-				+0.7
2,317,101	+				-1.2
2,317,112	+				-0.9
2,317,120	-				-0.3
2,317,148	-				-0.5
2,317,158	+				-0.1
2,317,161	+				+1.3
2,317,163	+				-0.7
2,317,171	-				-2.1
2,317,196	-				+1.2
2,317,222	+				+0.2
2,317,222	+				+0.8
2,317,230	-				+0.0
2,317,259	+				-1.3
2,317,265	+				+1.0
2,317,283	+				-0.3
2,317,283	+				-2.5
2,317,283	+				-0.6
2,317,286	-				-1.3
2,317,288	+				+0.7
2,317,296	-				-0.0
2,317,300	+				-0.6
2,317,301	-				-0.2
2,317,302	-				-0.3
2,317,303	-				-0.8
2,317,305	-				+1.0
2,317,308	-				-0.2
2,317,308	-				+1.1
2,317,354	+				-0.8
2,317,354	+				-0.2
2,317,354	+				+0.9
2,317,354	+				-0.1
2,317,362	-				-0.1
2,317,362	-				-1.2
2,317,372	+				-0.3
2,317,385	+				+0.1
2,317,390	+				-1.1
2,317,398	+				-1.3
2,317,403	+				+0.8
2,317,403	+				+0.7
2,317,403	+				-0.1
2,317,411	-				-1.0
2,317,453	-				-1.5
2,317,469	-		GFF2291	0.10	-0.9
2,317,473	+		GFF2291	0.11	-0.6
2,317,491	-		GFF2291	0.11	+0.8
2,317,554	-		GFF2291	0.14	-2.1
2,317,571	+		GFF2291	0.15	+0.2
2,317,587	-		GFF2291	0.16	-1.2
2,317,604	-		GFF2291	0.17	-0.9
2,317,615	+		GFF2291	0.17	+0.6
2,317,623	-		GFF2291	0.18	-0.1
2,317,632	+		GFF2291	0.18	-2.5
2,317,642	+		GFF2291	0.19	-0.6
2,317,642	+		GFF2291	0.19	-1.6
2,317,642	+		GFF2291	0.19	-1.3
2,317,642	+		GFF2291	0.19	+1.0
2,317,642	+		GFF2291	0.19	+1.3
2,317,642	+		GFF2291	0.19	+0.5
2,317,648	-		GFF2291	0.19	-0.7
2,317,650	-		GFF2291	0.19	+0.2
2,317,650	-		GFF2291	0.19	-0.5
2,317,650	-		GFF2291	0.19	-1.5
2,317,650	-		GFF2291	0.19	+1.0
2,317,742	-		GFF2291	0.23	-1.6
2,317,756	+		GFF2291	0.24	-0.3
2,317,757	+		GFF2291	0.24	-0.8
2,317,757	+		GFF2291	0.24	-1.8
2,317,757	+		GFF2291	0.24	+0.4
2,317,764	-		GFF2291	0.25	-2.7
2,317,765	-		GFF2291	0.25	+0.2
2,317,828	+		GFF2291	0.28	-0.2
2,317,828	+		GFF2291	0.28	-0.2
2,317,833	+		GFF2291	0.28	-0.5
2,317,842	+		GFF2291	0.28	+2.1
2,317,843	+		GFF2291	0.28	+0.3
2,317,843	+		GFF2291	0.28	-0.7
2,317,890	+		GFF2291	0.31	+0.7
2,317,923	+		GFF2291	0.32	+0.7
2,317,923	+		GFF2291	0.32	-1.9
2,317,936	-		GFF2291	0.33	-0.5
2,317,938	+		GFF2291	0.33	-0.3
2,317,938	+		GFF2291	0.33	-0.2
2,317,938	+		GFF2291	0.33	+0.5
2,317,938	+		GFF2291	0.33	-0.0
2,317,938	+		GFF2291	0.33	+0.1
2,317,944	+		GFF2291	0.33	-1.1
2,317,946	-		GFF2291	0.33	-1.8
2,317,946	-		GFF2291	0.33	-0.1
2,317,946	-		GFF2291	0.33	+0.1
2,317,946	-		GFF2291	0.33	+0.8
2,317,946	-		GFF2291	0.33	-0.6
2,317,953	+		GFF2291	0.34	+0.2
2,317,953	+		GFF2291	0.34	-1.8
2,317,958	+		GFF2291	0.34	+0.5
2,317,961	-		GFF2291	0.34	-3.0
2,317,961	-		GFF2291	0.34	-1.6
2,317,970	+		GFF2291	0.34	-1.9
2,317,970	+		GFF2291	0.34	-0.3
2,317,970	+		GFF2291	0.34	-0.1
2,317,978	-		GFF2291	0.35	+0.4
2,317,978	-		GFF2291	0.35	-2.2
2,317,988	+		GFF2291	0.35	-1.4
2,318,042	-		GFF2291	0.38	-0.2
2,318,054	-		GFF2291	0.38	-0.6
2,318,059	-		GFF2291	0.39	-0.3
2,318,064	+		GFF2291	0.39	-0.5
2,318,072	-		GFF2291	0.39	-0.9
2,318,072	-		GFF2291	0.39	-2.0
2,318,072	-		GFF2291	0.39	-2.6
2,318,073	-		GFF2291	0.39	+0.2
2,318,141	-		GFF2291	0.43	-0.8
2,318,153	-		GFF2291	0.43	-0.1
2,318,155	+		GFF2291	0.43	-0.6
2,318,169	-		GFF2291	0.44	-1.2
2,318,198	-		GFF2291	0.45	-1.9
2,318,214	-		GFF2291	0.46	-0.2
2,318,228	+		GFF2291	0.47	-0.6
2,318,249	-		GFF2291	0.48	-0.3
2,318,300	+		GFF2291	0.50	-0.1
2,318,338	-		GFF2291	0.52	-1.1
2,318,346	-		GFF2291	0.53	-1.1
2,318,352	+		GFF2291	0.53	+0.4
2,318,352	+		GFF2291	0.53	+0.2
2,318,360	-		GFF2291	0.53	-0.2
2,318,360	-		GFF2291	0.53	-0.1
2,318,363	+		GFF2291	0.53	-0.6
2,318,371	-		GFF2291	0.54	+0.2
2,318,371	-		GFF2291	0.54	-1.3
2,318,371	-		GFF2291	0.54	-0.3
2,318,388	+		GFF2291	0.55	-0.5
2,318,404	+		GFF2291	0.55	-0.3
2,318,411	-		GFF2291	0.56	+0.6
2,318,417	-		GFF2291	0.56	-0.4
2,318,422	+		GFF2291	0.56	+0.9
2,318,427	+		GFF2291	0.56	-0.8
2,318,435	-		GFF2291	0.57	+0.8
2,318,447	-		GFF2291	0.57	-1.2
2,318,485	-		GFF2291	0.59	-0.7
2,318,525	+		GFF2291	0.61	+0.6
2,318,525	+		GFF2291	0.61	-0.4
2,318,525	+		GFF2291	0.61	-1.2
2,318,525	+		GFF2291	0.61	-0.0
2,318,525	+		GFF2291	0.61	+1.5
2,318,525	+		GFF2291	0.61	-0.9
2,318,525	+		GFF2291	0.61	+0.8
2,318,525	+		GFF2291	0.61	-0.1
2,318,525	+		GFF2291	0.61	-2.1
2,318,525	+		GFF2291	0.61	+1.4
2,318,525	+		GFF2291	0.61	-0.3
2,318,533	-		GFF2291	0.62	+0.1
2,318,533	-		GFF2291	0.62	-0.5
2,318,533	-		GFF2291	0.62	-0.4
2,318,533	-		GFF2291	0.62	-0.0
2,318,533	-		GFF2291	0.62	-0.6
2,318,533	-		GFF2291	0.62	-0.7
2,318,550	-		GFF2291	0.62	-0.3
2,318,561	+		GFF2291	0.63	-0.0
2,318,561	+		GFF2291	0.63	+0.1
2,318,565	+		GFF2291	0.63	-2.7
2,318,565	+		GFF2291	0.63	-0.0
2,318,565	+		GFF2291	0.63	+0.2
2,318,569	-		GFF2291	0.63	-1.6
2,318,573	-		GFF2291	0.63	-0.2
2,318,573	-		GFF2291	0.63	+0.2
2,318,591	+		GFF2291	0.64	-1.0
2,318,605	+		GFF2291	0.65	-0.3
2,318,624	-		GFF2291	0.66	+0.6
2,318,711	+		GFF2291	0.70	+0.1
2,318,711	+		GFF2291	0.70	-1.8
2,318,711	+		GFF2291	0.70	+0.6
2,318,711	+		GFF2291	0.70	+0.7
2,318,711	+		GFF2291	0.70	-0.9
2,318,712	+		GFF2291	0.70	-1.8
2,318,714	-		GFF2291	0.70	+0.0
2,318,716	+		GFF2291	0.70	-1.0
2,318,716	+		GFF2291	0.70	-2.3
2,318,716	+		GFF2291	0.70	-0.3
2,318,716	+		GFF2291	0.70	+0.1
2,318,719	-		GFF2291	0.70	-0.2
2,318,719	-		GFF2291	0.70	-2.7
2,318,719	-		GFF2291	0.70	-1.2
2,318,719	-		GFF2291	0.70	-2.7
2,318,719	-		GFF2291	0.70	-1.7
2,318,724	-		GFF2291	0.71	-0.8
2,318,724	-		GFF2291	0.71	+0.0
2,318,731	+		GFF2291	0.71	-0.7
2,318,738	+		GFF2291	0.71	-1.2
2,318,738	+		GFF2291	0.71	+1.0
2,318,739	-		GFF2291	0.71	-0.1
2,318,753	-		GFF2291	0.72	+0.2
2,318,844	+		GFF2291	0.76	-1.3
2,318,886	+		GFF2291	0.78	-0.3
2,318,886	+		GFF2291	0.78	-0.3
2,318,921	+		GFF2291	0.80	+0.5
2,318,921	+		GFF2291	0.80	+0.5
2,318,921	+		GFF2291	0.80	-0.1
2,318,921	+		GFF2291	0.80	+1.4
2,318,921	+		GFF2291	0.80	+0.8
2,318,921	+		GFF2291	0.80	-1.5
2,318,921	+		GFF2291	0.80	-1.3
2,318,929	-		GFF2291	0.81	+1.3
2,318,929	-		GFF2291	0.81	+0.7
2,318,929	-		GFF2291	0.81	+0.4
2,318,929	-		GFF2291	0.81	-0.8
2,318,929	-		GFF2291	0.81	+0.2
2,318,929	-		GFF2291	0.81	-1.2
2,318,929	-		GFF2291	0.81	-0.3
2,318,929	-		GFF2291	0.81	+0.4
2,318,978	-		GFF2291	0.83	-0.3
2,319,011	+		GFF2291	0.85	+0.0
2,319,019	-		GFF2291	0.85	-1.5
2,319,023	+		GFF2291	0.85	-1.1
2,319,023	+		GFF2291	0.85	-0.1
2,319,023	+		GFF2291	0.85	-0.3
2,319,023	+		GFF2291	0.85	-1.8
2,319,024	-		GFF2291	0.85	+0.1
2,319,031	-		GFF2291	0.85	+0.4
2,319,031	-		GFF2291	0.85	-0.8
2,319,031	-		GFF2291	0.85	-1.0
2,319,031	-		GFF2291	0.85	+1.2
2,319,031	-		GFF2291	0.85	-1.2
2,319,031	-		GFF2291	0.85	-1.5
2,319,031	-		GFF2291	0.85	+0.8
2,319,041	-		GFF2291	0.86	+0.2
2,319,041	-		GFF2291	0.86	-1.6
2,319,049	-		GFF2291	0.86	+1.1
2,319,080	+		GFF2291	0.88	-0.9
2,319,088	+		GFF2291	0.88	+1.1
2,319,096	-		GFF2291	0.89	-0.2
2,319,102	+		GFF2291	0.89	+2.1
2,319,110	-		GFF2291	0.89	+0.6
2,319,124	-		GFF2291	0.90	-0.0
2,319,157	-				+0.5
2,319,167	+				-1.3
2,319,167	+				+0.7
2,319,167	+				+0.3
2,319,167	+				+0.2
2,319,175	-				-1.4
2,319,181	-				-1.8
2,319,191	+				-1.1
2,319,191	+				-0.4
2,319,191	+				+0.6
2,319,191	+				-0.6
2,319,191	+				-1.1
2,319,191	+				-0.5
2,319,197	+				-0.3
2,319,199	-				+1.2
2,319,199	-				-0.6
2,319,199	-				+1.4
2,319,218	-				-0.0
2,319,420	-				+2.0
2,319,420	-				-0.2
2,319,476	+		GFF2292	0.13	+0.3
2,319,485	+		GFF2292	0.15	-0.4
2,319,504	-		GFF2292	0.18	-1.1
2,319,509	+		GFF2292	0.18	-1.2
2,319,517	-		GFF2292	0.20	-2.0
2,319,519	+		GFF2292	0.20	-0.2
2,319,519	-		GFF2292	0.20	+0.9
2,319,527	-		GFF2292	0.21	-0.2
2,319,530	+		GFF2292	0.22	-0.8
2,319,576	+		GFF2292	0.29	-1.3
2,319,580	+		GFF2292	0.30	+1.0
2,319,580	+		GFF2292	0.30	-1.6
2,319,584	-		GFF2292	0.30	-0.7
2,319,596	+		GFF2292	0.32	+0.5
2,319,677	-		GFF2292	0.45	-0.7
2,319,685	+		GFF2292	0.46	-1.0
2,319,701	+		GFF2292	0.49	-0.2
2,319,711	-		GFF2292	0.50	-1.2
2,319,726	+		GFF2292	0.53	-1.8
2,319,728	+		GFF2292	0.53	-0.6
2,319,741	-		GFF2292	0.55	+1.2
2,319,743	-		GFF2292	0.55	+1.1
2,319,743	-		GFF2292	0.55	-1.2
2,319,765	+		GFF2292	0.59	+0.9
2,319,765	+		GFF2292	0.59	-0.0
2,319,770	+		GFF2292	0.60	-0.7
2,319,770	+		GFF2292	0.60	+0.4
2,319,770	+		GFF2292	0.60	-1.7
2,319,778	-		GFF2292	0.61	+0.1
2,319,793	+		GFF2292	0.63	-0.4
2,319,893	-		GFF2292	0.79	+0.1
2,319,916	-		GFF2292	0.83	-0.6
2,319,927	-		GFF2292	0.85	-1.6
2,319,949	+		GFF2292	0.88	-0.8
2,319,962	+				-0.7
2,319,966	+				+0.7
2,319,970	-				+0.1
2,319,970	-				-1.1
2,319,974	-				-0.2
2,319,976	+				-0.2
2,320,000	-				-0.8
2,320,018	+				-0.1
2,320,018	+				-0.0
2,320,026	-				-1.0
2,320,027	-				+0.7
2,320,029	+				+0.4
2,320,029	+				-1.1
2,320,032	-				-1.8
2,320,033	-				-0.1
2,320,039	-				-0.3
2,320,054	-				+1.2
2,320,079	+				+1.0
2,320,098	-				-0.5
2,320,174	-				-0.4
2,320,192	-		GFF2293	0.12	+1.2
2,320,231	+		GFF2293	0.17	-1.6
2,320,239	-		GFF2293	0.18	+0.9
2,320,265	-		GFF2293	0.22	-0.8