Strain Fitness in Sphingobium sp. HT1-2 around GFF2280

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,305,874	+		GFF2279	0.51	-0.7
2,305,874	+		GFF2279	0.51	-1.2
2,305,876	-		GFF2279	0.51	-0.4
2,305,876	-		GFF2279	0.51	+1.2
2,305,903	+		GFF2279	0.52	+0.1
2,305,913	+		GFF2279	0.53	-1.3
2,305,921	-		GFF2279	0.53	+0.2
2,305,925	+		GFF2279	0.54	+0.1
2,305,925	-		GFF2279	0.54	+0.2
2,305,944	+		GFF2279	0.55	-2.0
2,305,952	-		GFF2279	0.55	+0.3
2,305,954	+		GFF2279	0.55	+0.7
2,305,954	+		GFF2279	0.55	+0.2
2,305,954	+		GFF2279	0.55	-0.3
2,305,957	-		GFF2279	0.55	-0.3
2,305,962	-		GFF2279	0.56	-0.2
2,305,962	-		GFF2279	0.56	+0.8
2,305,962	-		GFF2279	0.56	-0.7
2,305,983	-		GFF2279	0.57	+2.0
2,305,983	-		GFF2279	0.57	-0.2
2,305,995	-		GFF2279	0.58	+0.2
2,305,995	-		GFF2279	0.58	+1.0
2,306,006	+		GFF2279	0.58	+1.0
2,306,006	+		GFF2279	0.58	+0.1
2,306,030	-		GFF2279	0.60	+0.3
2,306,052	-		GFF2279	0.61	-0.1
2,306,057	+		GFF2279	0.61	-2.2
2,306,067	+		GFF2279	0.62	+0.0
2,306,075	-		GFF2279	0.62	-0.3
2,306,084	+		GFF2279	0.63	-0.3
2,306,092	-		GFF2279	0.63	+1.2
2,306,122	-		GFF2279	0.65	-1.2
2,306,142	-		GFF2279	0.66	-0.2
2,306,183	+		GFF2279	0.69	+0.6
2,306,189	-		GFF2279	0.69	+0.7
2,306,189	-		GFF2279	0.69	-1.4
2,306,189	-		GFF2279	0.69	-0.7
2,306,203	-		GFF2279	0.70	-2.7
2,306,209	-		GFF2279	0.70	-0.9
2,306,210	+		GFF2279	0.70	+0.6
2,306,220	+		GFF2279	0.71	+0.3
2,306,228	+		GFF2279	0.71	-1.3
2,306,267	+		GFF2279	0.73	-1.6
2,306,296	-		GFF2279	0.75	-1.2
2,306,299	-		GFF2279	0.75	-0.2
2,306,304	+		GFF2279	0.76	+0.4
2,306,304	-		GFF2279	0.76	+0.8
2,306,304	-		GFF2279	0.76	-0.0
2,306,322	+		GFF2279	0.77	-0.3
2,306,323	-		GFF2279	0.77	-1.5
2,306,352	-		GFF2279	0.78	-0.9
2,306,365	+		GFF2279	0.79	+0.8
2,306,393	+		GFF2279	0.81	+0.9
2,306,395	+		GFF2279	0.81	+0.7
2,306,395	+		GFF2279	0.81	-0.9
2,306,396	+		GFF2279	0.81	-1.1
2,306,396	+		GFF2279	0.81	+0.6
2,306,396	+		GFF2279	0.81	-0.5
2,306,396	+		GFF2279	0.81	-1.3
2,306,396	+		GFF2279	0.81	-0.2
2,306,396	+		GFF2279	0.81	+0.2
2,306,396	+		GFF2279	0.81	-1.7
2,306,396	+		GFF2279	0.81	-1.5
2,306,396	+		GFF2279	0.81	+0.9
2,306,398	+		GFF2279	0.81	-1.2
2,306,404	-		GFF2279	0.81	+0.5
2,306,404	-		GFF2279	0.81	-2.1
2,306,404	-		GFF2279	0.81	+0.1
2,306,404	-		GFF2279	0.81	-1.3
2,306,404	-		GFF2279	0.81	+1.0
2,306,404	-		GFF2279	0.81	+0.1
2,306,404	-		GFF2279	0.81	-0.5
2,306,404	-		GFF2279	0.81	+0.8
2,306,404	-		GFF2279	0.81	+0.6
2,306,404	-		GFF2279	0.81	-1.0
2,306,404	-		GFF2279	0.81	+0.2
2,306,404	-		GFF2279	0.81	-1.3
2,306,426	+		GFF2279	0.83	+0.1
2,306,439	-		GFF2279	0.83	-0.3
2,306,439	-		GFF2279	0.83	-0.1
2,306,439	-		GFF2279	0.83	+0.8
2,306,439	-		GFF2279	0.83	-2.5
2,306,444	+		GFF2279	0.84	+0.3
2,306,452	-		GFF2279	0.84	+0.0
2,306,452	-		GFF2279	0.84	-1.6
2,306,452	-		GFF2279	0.84	-2.8
2,306,452	-		GFF2279	0.84	+0.1
2,306,467	-		GFF2279	0.85	-0.3
2,306,471	+		GFF2279	0.85	-0.6
2,306,471	+		GFF2279	0.85	+1.2
2,306,471	+		GFF2279	0.85	-1.3
2,306,471	+		GFF2279	0.85	+0.1
2,306,471	-		GFF2279	0.85	-3.6
2,306,477	+		GFF2279	0.86	+2.2
2,306,479	-		GFF2279	0.86	+0.5
2,306,481	+		GFF2279	0.86	-0.5
2,306,481	+		GFF2279	0.86	-0.6
2,306,481	+		GFF2279	0.86	+0.2
2,306,481	+		GFF2279	0.86	+0.2
2,306,481	+		GFF2279	0.86	-0.2
2,306,481	+		GFF2279	0.86	-0.9
2,306,481	+		GFF2279	0.86	-0.8
2,306,481	+		GFF2279	0.86	+0.4
2,306,481	+		GFF2279	0.86	+0.3
2,306,481	+		GFF2279	0.86	+1.4
2,306,489	-		GFF2279	0.86	-0.3
2,306,489	-		GFF2279	0.86	-0.4
2,306,489	-		GFF2279	0.86	-0.3
2,306,489	-		GFF2279	0.86	+0.9
2,306,489	-		GFF2279	0.86	-0.5
2,306,489	-		GFF2279	0.86	+1.5
2,306,489	-		GFF2279	0.86	+0.5
2,306,509	-		GFF2279	0.87	+0.5
2,306,511	+		GFF2279	0.88	-0.9
2,306,513	+		GFF2279	0.88	-0.2
2,306,513	+		GFF2279	0.88	-1.2
2,306,514	-		GFF2279	0.88	+1.8
2,306,526	-		GFF2279	0.88	-2.2
2,306,594	+				-0.4
2,306,597	+				+0.8
2,306,626	+				-0.2
2,306,628	+				+0.7
2,306,628	+				-1.0
2,306,636	-				+0.8
2,306,636	-				+0.7
2,306,636	-				-0.3
2,306,636	-				-0.3
2,306,636	-				-0.3
2,306,636	-				-1.7
2,306,636	-				+0.4
2,306,636	-				+0.7
2,306,662	+				+1.0
2,306,664	+				+0.6
2,306,668	+				-0.6
2,306,676	+				-1.4
2,306,676	+				+0.7
2,306,682	-				-0.2
2,306,683	-				+0.2
2,306,684	-				+0.2
2,306,684	-				-1.0
2,306,686	-				-1.3
2,306,707	-				-0.3
2,306,724	-				-1.1
2,306,732	+				-1.7
2,306,740	-				+0.1
2,306,759	-				-1.2
2,306,842	+				+0.7
2,306,850	-				-0.5
2,306,850	-				-1.0
2,306,862	+				+0.1
2,306,863	+				+0.7
2,306,881	+				+0.2
2,306,884	-				-0.7
2,306,901	+				-0.8
2,306,902	+				-1.4
2,306,945	-		GFF2280	0.10	-0.0
2,307,002	+		GFF2280	0.18	-0.6
2,307,003	-		GFF2280	0.19	+0.6
2,307,005	-		GFF2280	0.19	-0.0
2,307,072	+		GFF2280	0.28	+0.5
2,307,072	+		GFF2280	0.28	+0.4
2,307,072	+		GFF2280	0.28	-0.5
2,307,075	-		GFF2280	0.29	+0.3
2,307,632	+				+0.8
2,307,677	-				-0.9
2,307,684	+				+0.3
2,307,684	+				-0.6
2,307,684	+				+0.9
2,307,684	+				-0.4
2,307,684	+				-0.2
2,307,684	+				+0.3
2,307,684	+				+0.8
2,307,684	+				-2.3
2,307,692	-				-1.2
2,307,692	-				-0.6
2,307,692	-				+0.2
2,307,692	-				-0.9
2,307,692	-				+0.0
2,307,700	-				-0.8
2,307,707	+				-0.9
2,307,740	+				-0.2
2,307,747	+				-0.2
2,307,761	-				+0.6
2,307,772	+				-0.1
2,307,792	-		GFF2281	0.12	-1.3
2,307,797	-		GFF2281	0.12	+0.0
2,307,828	-		GFF2281	0.15	+0.4
2,307,880	+		GFF2281	0.20	-0.3
2,307,880	+		GFF2281	0.20	-0.2
2,307,913	+		GFF2281	0.23	-1.8
2,307,913	+		GFF2281	0.23	-1.7
2,307,917	+		GFF2281	0.24	+0.4
2,307,921	-		GFF2281	0.24	-0.8
2,307,921	-		GFF2281	0.24	-0.6
2,307,931	-		GFF2281	0.25	-2.2
2,307,949	-		GFF2281	0.27	+0.5
2,307,953	-		GFF2281	0.27	-2.9
2,307,960	-		GFF2281	0.28	-2.1
2,307,978	-		GFF2281	0.30	+0.4
2,307,991	+		GFF2281	0.31	+0.1
2,307,991	+		GFF2281	0.31	-0.3
2,307,992	-		GFF2281	0.31	-0.2
2,307,994	-		GFF2281	0.31	-1.2
2,308,006	+		GFF2281	0.32	-0.3
2,308,018	-		GFF2281	0.34	-2.1
2,308,024	+		GFF2281	0.34	-2.5
2,308,024	+		GFF2281	0.34	-0.6
2,308,030	+		GFF2281	0.35	-1.3
2,308,032	-		GFF2281	0.35	-0.7
2,308,032	-		GFF2281	0.35	+1.1
2,308,032	-		GFF2281	0.35	+0.1
2,308,032	-		GFF2281	0.35	+0.2
2,308,062	-		GFF2281	0.38	-1.0
2,308,075	-		GFF2281	0.39	-1.8
2,308,103	-		GFF2281	0.42	+0.0
2,308,123	+		GFF2281	0.44	-2.2
2,308,123	+		GFF2281	0.44	-1.7
2,308,138	+		GFF2281	0.45	-0.2
2,308,138	+		GFF2281	0.45	+0.7
2,308,143	+		GFF2281	0.46	-0.2
2,308,143	+		GFF2281	0.46	+1.5
2,308,145	+		GFF2281	0.46	+0.6
2,308,146	-		GFF2281	0.46	+0.2
2,308,146	-		GFF2281	0.46	+0.4
2,308,146	-		GFF2281	0.46	-0.8
2,308,146	-		GFF2281	0.46	+0.3
2,308,151	-		GFF2281	0.47	-0.2
2,308,151	-		GFF2281	0.47	-2.4
2,308,163	+		GFF2281	0.48	-0.9
2,308,175	+		GFF2281	0.49	-0.0
2,308,183	-		GFF2281	0.50	-2.3
2,308,204	+		GFF2281	0.52	-0.8
2,308,204	+		GFF2281	0.52	-1.3
2,308,204	+		GFF2281	0.52	+0.0
2,308,204	+		GFF2281	0.52	+0.3
2,308,204	+		GFF2281	0.52	+0.4
2,308,211	+		GFF2281	0.52	-0.0
2,308,212	+		GFF2281	0.52	-0.1
2,308,212	+		GFF2281	0.52	-1.2
2,308,212	-		GFF2281	0.52	+0.1
2,308,212	-		GFF2281	0.52	-0.1
2,308,212	-		GFF2281	0.52	+0.9
2,308,212	-		GFF2281	0.52	-0.5
2,308,214	-		GFF2281	0.53	-2.2
2,308,219	+		GFF2281	0.53	-1.2
2,308,219	+		GFF2281	0.53	-2.5
2,308,219	+		GFF2281	0.53	-1.7
2,308,219	-		GFF2281	0.53	+0.9
2,308,219	-		GFF2281	0.53	+1.2
2,308,219	-		GFF2281	0.53	+0.3
2,308,227	-		GFF2281	0.54	-0.2
2,308,227	-		GFF2281	0.54	-0.2
2,308,255	-		GFF2281	0.57	-0.1
2,308,255	-		GFF2281	0.57	-1.8
2,308,255	-		GFF2281	0.57	+0.7
2,308,287	+		GFF2281	0.60	-1.7
2,308,287	+		GFF2281	0.60	-1.0
2,308,290	-		GFF2281	0.60	+0.9
2,308,290	-		GFF2281	0.60	-1.2
2,308,291	+		GFF2281	0.60	+0.4
2,308,295	-		GFF2281	0.61	+0.5
2,308,295	-		GFF2281	0.61	+1.3
2,308,295	-		GFF2281	0.61	-1.1
2,308,299	-		GFF2281	0.61	-1.2
2,308,299	-		GFF2281	0.61	+0.5
2,308,299	-		GFF2281	0.61	+0.9
2,308,301	+		GFF2281	0.61	+0.9
2,308,301	+		GFF2281	0.61	-0.7
2,308,319	+		GFF2281	0.63	-1.3
2,308,327	-		GFF2281	0.64	-1.2
2,308,375	-		GFF2281	0.68	-0.7
2,308,385	+		GFF2281	0.69	-0.8
2,308,399	+		GFF2281	0.71	-2.0
2,308,399	+		GFF2281	0.71	+0.2
2,308,401	+		GFF2281	0.71	-0.5
2,308,401	+		GFF2281	0.71	-0.9
2,308,404	+		GFF2281	0.71	+0.5
2,308,409	-		GFF2281	0.72	+0.1
2,308,412	-		GFF2281	0.72	+0.7
2,308,426	+		GFF2281	0.73	-1.6
2,308,432	-		GFF2281	0.74	-1.1
2,308,434	-		GFF2281	0.74	+0.4
2,308,434	-		GFF2281	0.74	-1.0
2,308,439	+		GFF2281	0.75	-1.6
2,308,447	-		GFF2281	0.75	+0.2
2,308,488	+		GFF2281	0.79	-1.2
2,308,491	-		GFF2281	0.80	+0.2
2,308,495	+		GFF2281	0.80	-1.2
2,308,513	-		GFF2281	0.82	+0.4
2,308,514	+		GFF2281	0.82	+0.3
2,308,532	-		GFF2281	0.84	+0.4
2,308,532	-		GFF2281	0.84	-0.3
2,308,551	+		GFF2281	0.85	+0.9
2,308,559	-		GFF2281	0.86	-1.2
2,308,562	+		GFF2281	0.86	-1.6
2,308,569	-		GFF2281	0.87	-1.7
2,308,570	-		GFF2281	0.87	-0.7