Strain Fitness in Sphingobium sp. HT1-2 around GFF2278

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,304,042	-				-0.3
2,304,065	+				-0.1
2,304,073	-		GFF2277	0.12	+0.3
2,304,106	-		GFF2277	0.25	-0.3
2,304,118	+		GFF2277	0.30	-1.3
2,304,119	+		GFF2277	0.30	+0.7
2,304,128	-		GFF2277	0.34	-0.1
2,304,164	+		GFF2277	0.48	-0.7
2,304,164	+		GFF2277	0.48	-2.5
2,304,168	+		GFF2277	0.50	-0.7
2,304,169	+		GFF2277	0.50	-1.0
2,304,172	-		GFF2277	0.51	+0.6
2,304,172	-		GFF2277	0.51	-2.2
2,304,176	-		GFF2277	0.53	-0.5
2,304,176	-		GFF2277	0.53	+0.5
2,304,199	+		GFF2277	0.62	-0.9
2,304,206	+		GFF2277	0.65	-0.3
2,304,214	-		GFF2277	0.68	-1.1
2,304,222	+		GFF2277	0.71	+1.1
2,304,230	-		GFF2277	0.74	-1.9
2,304,246	+		GFF2277	0.81	-1.3
2,304,268	+		GFF2277	0.89	-0.4
2,304,295	-				-0.2
2,304,319	+				+0.6
2,304,327	-				+0.9
2,304,344	-				-1.7
2,304,349	-				-1.1
2,304,349	-				-0.8
2,304,357	+				-0.1
2,304,357	+				+0.8
2,304,357	+				+0.1
2,304,364	+				-0.4
2,304,372	-				-0.3
2,304,415	+				-2.3
2,304,415	+				-0.6
2,304,423	-				+1.8
2,304,423	-				+0.1
2,304,428	+				+0.9
2,304,429	-				+1.0
2,304,449	+				-2.3
2,304,449	-				-1.2
2,304,451	-				-0.0
2,304,451	-				-0.8
2,304,481	-		GFF2278	0.11	-1.0
2,304,486	-		GFF2278	0.12	+0.7
2,304,552	+		GFF2278	0.24	-0.0
2,304,587	+		GFF2278	0.31	-1.4
2,304,598	+		GFF2278	0.33	-0.1
2,304,598	+		GFF2278	0.33	+0.2
2,304,602	+		GFF2278	0.33	-0.0
2,304,610	-		GFF2278	0.35	-1.0
2,304,617	+		GFF2278	0.36	-0.1
2,304,622	+		GFF2278	0.37	+1.2
2,304,625	-		GFF2278	0.38	-0.2
2,304,625	-		GFF2278	0.38	-1.2
2,304,637	-		GFF2278	0.40	-0.6
2,304,642	-		GFF2278	0.41	+0.1
2,304,655	-		GFF2278	0.43	+1.5
2,304,673	+		GFF2278	0.47	-1.8
2,304,678	-		GFF2278	0.48	-1.3
2,304,680	+		GFF2278	0.48	-1.0
2,304,688	+		GFF2278	0.49	-1.4
2,304,688	+		GFF2278	0.49	-1.8
2,304,688	-		GFF2278	0.49	-0.0
2,304,688	-		GFF2278	0.49	-0.7
2,304,696	-		GFF2278	0.51	+0.0
2,304,747	+		GFF2278	0.60	-1.2
2,304,747	+		GFF2278	0.60	-0.0
2,304,747	+		GFF2278	0.60	-2.6
2,304,747	+		GFF2278	0.60	+0.6
2,304,747	+		GFF2278	0.60	+0.6
2,304,747	+		GFF2278	0.60	+0.7
2,304,755	-		GFF2278	0.62	+0.8
2,304,755	-		GFF2278	0.62	-0.5
2,304,755	-		GFF2278	0.62	-2.0
2,304,755	-		GFF2278	0.62	-1.5
2,304,755	-		GFF2278	0.62	+0.4
2,304,771	+		GFF2278	0.65	+0.7
2,304,773	-		GFF2278	0.65	+1.5
2,304,779	-		GFF2278	0.66	+0.1
2,304,779	-		GFF2278	0.66	+0.1
2,304,780	-		GFF2278	0.67	-1.3
2,304,780	-		GFF2278	0.67	-0.1
2,304,815	+		GFF2278	0.73	+0.6
2,304,815	+		GFF2278	0.73	+0.9
2,304,822	+		GFF2278	0.75	-0.3
2,304,822	+		GFF2278	0.75	-0.8
2,304,822	+		GFF2278	0.75	-0.6
2,304,822	+		GFF2278	0.75	-0.3
2,304,822	+		GFF2278	0.75	+0.5
2,304,823	-		GFF2278	0.75	-0.4
2,304,823	-		GFF2278	0.75	-1.5
2,304,823	-		GFF2278	0.75	-0.1
2,304,823	-		GFF2278	0.75	-0.0
2,304,823	-		GFF2278	0.75	-1.3
2,304,823	-		GFF2278	0.75	+0.4
2,304,825	+		GFF2278	0.75	-1.3
2,304,830	-		GFF2278	0.76	-1.2
2,304,850	-		GFF2278	0.80	-0.5
2,304,873	-		GFF2278	0.84	+1.6
2,304,884	+		GFF2278	0.86	+0.2
2,304,885	-		GFF2278	0.86	-0.0
2,304,886	+		GFF2278	0.87	+0.9
2,304,893	+		GFF2278	0.88	-1.3
2,304,893	-		GFF2278	0.88	+0.1
2,304,899	-		GFF2278	0.89	-1.6
2,304,903	-		GFF2278	0.90	-0.5
2,304,936	+				+0.1
2,304,968	+				-2.2
2,304,968	+				+0.7
2,304,986	-				-0.2
2,304,991	+				+0.0
2,304,991	+				+0.5
2,304,999	-				-1.2
2,305,013	+				-1.2
2,305,013	+				+0.2
2,305,021	-				-2.3
2,305,021	-				-1.3
2,305,023	+				-0.2
2,305,052	+				+0.4
2,305,105	+				-0.2
2,305,106	+				-1.5
2,305,106	+				-1.7
2,305,114	-				-0.0
2,305,114	-				-0.3
2,305,114	-				-0.5
2,305,114	-				+0.1
2,305,116	+				+0.4
2,305,120	+				+0.9
2,305,124	-				+1.1
2,305,126	+				+0.4
2,305,128	-				+0.1
2,305,134	-				+1.1
2,305,137	+				-1.4
2,305,144	-				-0.7
2,305,144	-				-0.5
2,305,151	+				+0.2
2,305,153	-				+0.9
2,305,161	+				-1.0
2,305,161	+				-0.5
2,305,161	+				-0.9
2,305,169	-				+0.2
2,305,178	+		GFF2279	0.10	+1.2
2,305,185	-		GFF2279	0.11	+0.5
2,305,202	-		GFF2279	0.12	-1.3
2,305,212	+		GFF2279	0.12	-0.3
2,305,218	+		GFF2279	0.12	-0.2
2,305,229	+		GFF2279	0.13	-0.8
2,305,229	+		GFF2279	0.13	-1.4
2,305,229	+		GFF2279	0.13	-0.8
2,305,237	-		GFF2279	0.14	-0.8
2,305,237	-		GFF2279	0.14	-2.3
2,305,237	-		GFF2279	0.14	+0.2
2,305,265	+		GFF2279	0.15	+0.8
2,305,273	-		GFF2279	0.16	-0.2
2,305,311	+		GFF2279	0.18	-1.4
2,305,328	-		GFF2279	0.19	+1.8
2,305,332	+		GFF2279	0.19	+0.4
2,305,332	+		GFF2279	0.19	-1.1
2,305,332	+		GFF2279	0.19	-0.2
2,305,339	-		GFF2279	0.20	+0.8
2,305,340	-		GFF2279	0.20	+1.0
2,305,340	-		GFF2279	0.20	-0.1
2,305,358	+		GFF2279	0.21	-0.6
2,305,366	-		GFF2279	0.21	-0.6
2,305,407	-		GFF2279	0.23	-0.8
2,305,416	-		GFF2279	0.24	-2.2
2,305,433	+		GFF2279	0.25	+0.1
2,305,452	-		GFF2279	0.26	+0.7
2,305,469	+		GFF2279	0.27	-0.2
2,305,496	+		GFF2279	0.29	-0.1
2,305,501	+		GFF2279	0.29	-0.4
2,305,526	+		GFF2279	0.30	+0.5
2,305,527	-		GFF2279	0.30	+0.1
2,305,534	-		GFF2279	0.31	-0.3
2,305,537	+		GFF2279	0.31	-0.6
2,305,545	-		GFF2279	0.31	+1.6
2,305,545	-		GFF2279	0.31	+0.5
2,305,552	+		GFF2279	0.32	-0.5
2,305,573	+		GFF2279	0.33	-0.1
2,305,595	-		GFF2279	0.34	-0.4
2,305,595	-		GFF2279	0.34	-1.7
2,305,603	-		GFF2279	0.35	+0.0
2,305,606	+		GFF2279	0.35	-1.9
2,305,614	-		GFF2279	0.35	+1.0
2,305,614	-		GFF2279	0.35	+0.4
2,305,615	+		GFF2279	0.36	+0.6
2,305,628	+		GFF2279	0.36	+0.2
2,305,656	+		GFF2279	0.38	+0.4
2,305,657	+		GFF2279	0.38	+0.4
2,305,664	-		GFF2279	0.38	-0.1
2,305,665	-		GFF2279	0.38	+0.7
2,305,717	+		GFF2279	0.41	-0.4
2,305,717	-		GFF2279	0.41	-0.0
2,305,730	-		GFF2279	0.42	-0.2
2,305,784	+		GFF2279	0.45	-0.9
2,305,784	-		GFF2279	0.45	-0.8
2,305,794	-		GFF2279	0.46	-0.6
2,305,835	+		GFF2279	0.48	-0.2
2,305,858	-		GFF2279	0.50	+0.1
2,305,858	-		GFF2279	0.50	+0.7
2,305,866	-		GFF2279	0.50	-1.6
2,305,866	-		GFF2279	0.50	-0.7
2,305,868	+		GFF2279	0.50	+0.6
2,305,874	+		GFF2279	0.51	-0.7
2,305,874	+		GFF2279	0.51	-1.2
2,305,876	-		GFF2279	0.51	-0.4
2,305,876	-		GFF2279	0.51	+1.2
2,305,903	+		GFF2279	0.52	+0.1
2,305,913	+		GFF2279	0.53	-1.3
2,305,921	-		GFF2279	0.53	+0.2
2,305,925	+		GFF2279	0.54	+0.1
2,305,925	-		GFF2279	0.54	+0.2
2,305,944	+		GFF2279	0.55	-2.0
2,305,952	-		GFF2279	0.55	+0.3
2,305,954	+		GFF2279	0.55	+0.7
2,305,954	+		GFF2279	0.55	+0.2
2,305,954	+		GFF2279	0.55	-0.3
2,305,957	-		GFF2279	0.55	-0.3