Strain Fitness in Sphingobium sp. HT1-2 around GFF2244

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,270,472	+		GFF2242	0.61	-1.1
2,270,552	+		GFF2242	0.84	-2.7
2,270,560	-		GFF2242	0.86	+1.3
2,270,582	+				-0.2
2,270,591	+				+0.8
2,270,591	+				+0.7
2,270,591	+				+0.1
2,270,596	+				-0.5
2,270,601	+				-0.4
2,270,601	+				+0.6
2,270,601	+				-0.5
2,271,245	-				-0.4
2,271,272	+				-2.2
2,271,273	+				-0.3
2,271,273	+				-0.5
2,271,280	-				+0.4
2,271,287	-				+0.9
2,271,300	+				+0.4
2,271,300	+				+0.4
2,271,308	-				+0.5
2,271,321	+				-0.7
2,271,321	+				+0.1
2,271,321	+				-0.9
2,271,326	+				+0.2
2,271,329	-				-0.5
2,271,329	-				-1.2
2,271,400	+				-1.4
2,271,400	+				-0.3
2,271,400	+				-2.2
2,271,408	-				-1.8
2,271,408	-				-0.9
2,271,410	+				-0.2
2,271,410	+				+0.2
2,271,410	+				-1.1
2,271,418	-				+0.1
2,271,523	-		GFF2244	0.17	+0.6
2,271,523	-		GFF2244	0.17	+1.1
2,271,523	-		GFF2244	0.17	+0.1
2,271,523	-		GFF2244	0.17	-1.2
2,271,530	+		GFF2244	0.17	-0.6
2,271,530	+		GFF2244	0.17	+0.3
2,271,530	+		GFF2244	0.17	-1.0
2,271,530	+		GFF2244	0.17	-1.2
2,271,538	-		GFF2244	0.18	+0.7
2,271,538	-		GFF2244	0.18	-0.4
2,271,545	-		GFF2244	0.19	-0.1
2,271,550	-		GFF2244	0.19	+0.9
2,271,557	-		GFF2244	0.20	-0.4
2,271,557	-		GFF2244	0.20	+0.6
2,271,575	+		GFF2244	0.21	-1.1
2,271,584	+		GFF2244	0.22	-1.5
2,271,584	+		GFF2244	0.22	+0.4
2,271,592	-		GFF2244	0.23	-0.6
2,271,592	-		GFF2244	0.23	-0.5
2,271,592	-		GFF2244	0.23	-0.2
2,271,629	-		GFF2244	0.26	-1.4
2,271,652	+		GFF2244	0.28	-1.8
2,271,660	-		GFF2244	0.29	+0.6
2,271,676	+		GFF2244	0.30	+1.1
2,271,684	-		GFF2244	0.31	-0.5
2,271,691	+		GFF2244	0.32	-1.5
2,271,691	+		GFF2244	0.32	-0.8
2,271,691	+		GFF2244	0.32	+0.2
2,271,699	-		GFF2244	0.32	+0.6
2,271,699	-		GFF2244	0.32	+0.3
2,271,699	-		GFF2244	0.32	-1.1
2,271,699	-		GFF2244	0.32	+0.4
2,271,699	-		GFF2244	0.32	-1.5
2,271,699	-		GFF2244	0.32	-0.4
2,271,709	-		GFF2244	0.33	+0.2
2,271,709	-		GFF2244	0.33	-1.3
2,271,718	+		GFF2244	0.34	+1.6
2,271,719	-		GFF2244	0.34	-0.0
2,271,755	+		GFF2244	0.37	-0.1
2,271,763	-		GFF2244	0.38	-1.9
2,271,765	+		GFF2244	0.38	-0.1
2,271,765	+		GFF2244	0.38	-1.6
2,271,773	-		GFF2244	0.39	-1.1
2,271,789	+		GFF2244	0.40	-0.3
2,271,792	-		GFF2244	0.41	-0.6
2,271,797	-		GFF2244	0.41	-2.2
2,271,797	-		GFF2244	0.41	-1.8
2,271,812	-		GFF2244	0.43	-0.9
2,271,815	+		GFF2244	0.43	-0.1
2,271,819	+		GFF2244	0.43	+1.3
2,271,819	+		GFF2244	0.43	+0.3
2,271,819	+		GFF2244	0.43	-0.5
2,271,819	+		GFF2244	0.43	+0.4
2,271,819	+		GFF2244	0.43	+1.2
2,271,823	-		GFF2244	0.44	-0.1
2,271,824	+		GFF2244	0.44	-2.2
2,271,827	+		GFF2244	0.44	+0.4
2,271,827	-		GFF2244	0.44	+0.4
2,271,827	-		GFF2244	0.44	+0.1
2,271,827	-		GFF2244	0.44	+0.2
2,271,827	-		GFF2244	0.44	-0.5
2,271,827	-		GFF2244	0.44	+1.0
2,271,835	-		GFF2244	0.45	-0.0
2,271,892	+		GFF2244	0.50	+0.5
2,271,892	+		GFF2244	0.50	+1.6
2,271,927	-		GFF2244	0.53	+0.1
2,271,945	-		GFF2244	0.54	-0.6
2,271,950	+		GFF2244	0.55	+0.3
2,271,950	+		GFF2244	0.55	-1.0
2,271,950	+		GFF2244	0.55	+0.6
2,271,971	+		GFF2244	0.57	+0.1
2,271,986	+		GFF2244	0.58	-0.2
2,271,988	-		GFF2244	0.58	+0.2
2,271,989	-		GFF2244	0.58	-1.7
2,271,994	-		GFF2244	0.59	-1.2
2,271,994	-		GFF2244	0.59	-0.5
2,272,017	+		GFF2244	0.61	-1.4
2,272,025	-		GFF2244	0.62	+0.1
2,272,028	+		GFF2244	0.62	-0.2
2,272,028	+		GFF2244	0.62	+0.7
2,272,028	+		GFF2244	0.62	-1.0
2,272,028	+		GFF2244	0.62	+0.2
2,272,036	-		GFF2244	0.63	-0.9
2,272,065	+		GFF2244	0.65	-0.7
2,272,070	+		GFF2244	0.66	+0.1
2,272,072	+		GFF2244	0.66	-0.5
2,272,073	-		GFF2244	0.66	-1.6
2,272,073	-		GFF2244	0.66	-0.4
2,272,097	+		GFF2244	0.68	+0.4
2,272,114	-		GFF2244	0.70	+0.5
2,272,121	-		GFF2244	0.70	-0.5
2,272,121	-		GFF2244	0.70	-1.5
2,272,124	+		GFF2244	0.70	-0.7
2,272,127	-		GFF2244	0.71	+0.3
2,272,132	-		GFF2244	0.71	-0.4
2,272,140	+		GFF2244	0.72	-0.6
2,272,157	-		GFF2244	0.73	+1.1
2,272,161	+		GFF2244	0.74	-1.5
2,272,166	+		GFF2244	0.74	+0.8
2,272,166	+		GFF2244	0.74	-1.2
2,272,166	+		GFF2244	0.74	+1.0
2,272,169	-		GFF2244	0.74	-0.8
2,272,169	-		GFF2244	0.74	-0.4
2,272,193	-		GFF2244	0.77	-0.5
2,272,203	-		GFF2244	0.77	+0.7
2,272,220	+		GFF2244	0.79	+0.8
2,272,228	-		GFF2244	0.80	+1.1
2,272,281	-		GFF2244	0.84	-0.3
2,272,286	+		GFF2244	0.85	-0.0
2,272,292	-		GFF2244	0.85	+1.2
2,272,295	+		GFF2244	0.86	-0.5
2,272,305	+		GFF2244	0.87	-0.0
2,272,306	+		GFF2244	0.87	-0.5
2,272,313	-		GFF2244	0.87	-0.5
2,272,324	+		GFF2244	0.88	-0.6
2,272,332	-		GFF2244	0.89	+0.1
2,272,332	-		GFF2244	0.89	+0.0
2,272,332	-		GFF2244	0.89	+0.6
2,272,332	-		GFF2244	0.89	-0.4
2,272,332	-		GFF2244	0.89	+0.4
2,272,337	-		GFF2244	0.89	+0.6
2,272,378	-				+1.7
2,272,394	+				+0.3
2,272,394	+				-0.3
2,272,404	+				-0.1
2,272,404	+				-0.8
2,272,404	+				+0.3
2,272,412	-				-0.5
2,272,412	-				+0.2
2,272,412	-				+1.0
2,272,412	-				-1.5
2,272,412	-				+1.1
2,272,412	-				-1.7
2,272,412	-				+0.2
2,272,412	-				+1.6
2,272,452	+				-0.6
2,272,459	+				+0.1
2,272,468	-				+0.6
2,272,472	-				-0.7
2,272,473	-				-2.1
2,272,474	-				+0.9
2,272,482	-				-0.2
2,272,487	+				+1.5
2,272,499	-				-0.2
2,272,584	+				+0.9
2,272,592	-				-0.7
2,272,596	+				+0.9
2,272,597	-				-0.5
2,272,604	-				-2.8
2,272,604	-				-0.0
2,272,604	-				-0.9
2,272,605	-				-0.8
2,272,613	-				+0.6
2,272,615	-				-0.4
2,272,621	-				-0.6
2,272,628	-				+0.2
2,272,664	+				-0.0
2,272,664	+				+0.3
2,272,672	-				-0.4
2,272,672	-				-1.1
2,272,677	+				-1.5
2,272,720	+		GFF2245	0.18	-0.5
2,272,720	+		GFF2245	0.18	+0.2
2,272,720	+		GFF2245	0.18	-0.1
2,272,720	+		GFF2245	0.18	-0.4
2,272,720	+		GFF2245	0.18	-1.2
2,272,720	+		GFF2245	0.18	-1.2
2,272,720	+		GFF2245	0.18	+0.9
2,272,720	+		GFF2245	0.18	+1.1
2,272,722	-		GFF2245	0.19	+1.1
2,272,723	-		GFF2245	0.19	-1.2
2,272,728	-		GFF2245	0.20	+0.2
2,272,728	-		GFF2245	0.20	+0.4
2,272,728	-		GFF2245	0.20	+0.4
2,272,728	-		GFF2245	0.20	-0.4
2,272,737	-		GFF2245	0.22	-0.6
2,272,739	+		GFF2245	0.23	-0.0
2,272,747	-		GFF2245	0.25	-1.5
2,272,747	-		GFF2245	0.25	+0.4
2,272,768	+		GFF2245	0.30	-0.3
2,272,777	-		GFF2245	0.32	+1.2
2,272,811	+		GFF2245	0.40	-1.4
2,272,819	-		GFF2245	0.42	+0.3
2,272,819	-		GFF2245	0.42	-0.8
2,272,839	-		GFF2245	0.46	-0.1
2,272,865	+		GFF2245	0.52	-0.2
2,272,870	+		GFF2245	0.54	-0.4
2,272,899	+		GFF2245	0.61	-0.4
2,272,899	+		GFF2245	0.61	+0.6
2,272,899	+		GFF2245	0.61	-1.1
2,272,907	-		GFF2245	0.62	-0.0
2,272,912	-		GFF2245	0.64	+0.6
2,272,930	+		GFF2245	0.68	-0.7
2,272,930	+		GFF2245	0.68	+0.4
2,272,934	-		GFF2245	0.69	-0.8
2,272,965	-		GFF2245	0.76	-0.6
2,272,971	-		GFF2245	0.78	+0.2
2,273,027	+				-1.2
2,273,034	+				-1.2
2,273,037	+				+0.0
2,273,037	+				+0.2
2,273,037	+				-0.4
2,273,045	-				+1.7
2,273,055	+				-0.5
2,273,062	+				-0.7
2,273,068	-				+0.3
2,273,068	-				+0.8
2,273,082	-				-0.9
2,273,093	-				-1.4
2,273,098	+				-2.8
2,273,112	-				+0.5
2,273,265	+		GFF2246	0.15	-1.1
2,273,265	+		GFF2246	0.15	-1.4
2,273,330	-		GFF2246	0.25	-0.7
2,273,331	+		GFF2246	0.25	-0.9
2,273,354	+		GFF2246	0.29	-1.6
2,273,371	-		GFF2246	0.31	+0.2
2,273,378	+		GFF2246	0.32	+0.7
2,273,378	+		GFF2246	0.32	+1.0
2,273,386	-		GFF2246	0.34	-1.5
2,273,410	+		GFF2246	0.37	-2.1
2,273,410	+		GFF2246	0.37	+0.1
2,273,431	+		GFF2246	0.41	+0.5
2,273,436	+		GFF2246	0.41	-0.5
2,273,436	+		GFF2246	0.41	-2.4
2,273,436	+		GFF2246	0.41	-2.3
2,273,442	+		GFF2246	0.42	+0.5
2,273,444	-		GFF2246	0.43	+0.2
2,273,444	-		GFF2246	0.43	-1.5
2,273,444	-		GFF2246	0.43	-1.8
2,273,450	-		GFF2246	0.43	+0.5