Strain Fitness in Sphingobium sp. HT1-2 around GFF2237

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,264,115	-				+0.6
2,264,120	-				+0.0
2,264,176	-				-0.8
2,264,176	-				-0.1
2,264,176	-				-0.6
2,264,176	-				-0.0
2,264,176	-				-1.2
2,264,176	-				-1.8
2,264,178	+				-1.6
2,264,178	+				-1.4
2,264,186	-				+1.1
2,264,188	+				-0.6
2,264,188	-				-0.1
2,264,193	-				-1.0
2,264,202	+		GFF2235	0.12	-0.7
2,264,222	-		GFF2235	0.17	+0.4
2,264,227	-		GFF2235	0.18	+0.3
2,264,237	+		GFF2235	0.20	-0.4
2,264,252	-		GFF2235	0.24	-1.5
2,264,271	-		GFF2235	0.29	+0.3
2,264,279	-		GFF2235	0.30	-0.7
2,264,369	+		GFF2235	0.52	-1.2
2,264,397	+		GFF2235	0.59	-0.5
2,264,397	+		GFF2235	0.59	-0.5
2,264,397	+		GFF2235	0.59	-1.8
2,264,405	-		GFF2235	0.61	-0.2
2,264,405	-		GFF2235	0.61	+1.0
2,264,415	-		GFF2235	0.63	+0.5
2,264,435	+		GFF2235	0.68	+1.1
2,264,459	+		GFF2235	0.74	-0.9
2,264,465	+		GFF2235	0.75	+0.5
2,264,465	+		GFF2235	0.75	+1.1
2,264,465	+		GFF2235	0.75	-1.4
2,264,470	+		GFF2235	0.77	+0.5
2,264,473	-		GFF2235	0.77	-1.0
2,264,478	-		GFF2235	0.79	-1.2
2,264,480	+		GFF2235	0.79	+0.7
2,264,480	+		GFF2235	0.79	+0.8
2,264,480	+		GFF2235	0.79	-0.2
2,264,500	-		GFF2235	0.84	-0.9
2,264,501	+		GFF2235	0.84	-0.5
2,264,506	+		GFF2235	0.85	+0.8
2,264,506	+		GFF2235	0.85	-1.9
2,264,506	-		GFF2235	0.85	-0.7
2,264,508	+		GFF2235	0.86	-2.0
2,264,523	+		GFF2235	0.89	-0.1
2,264,523	+		GFF2235	0.89	-2.1
2,264,523	+		GFF2235	0.89	-1.3
2,264,531	-				-0.3
2,264,533	+				+0.3
2,264,583	+				+0.7
2,264,606	+				+0.7
2,264,606	+				-0.3
2,264,614	-				+0.7
2,264,616	+				+0.3
2,264,631	+				-2.2
2,264,639	-				+0.7
2,264,676	+				+0.5
2,264,683	+				-0.6
2,264,683	+				-1.5
2,264,683	+				+0.1
2,264,691	-				-0.1
2,264,694	+				+0.6
2,264,717	+				-0.3
2,264,722	+				-0.4
2,264,722	+				-0.7
2,264,722	+				-0.6
2,264,722	+				-0.6
2,264,722	+				-0.4
2,264,722	+				+1.5
2,264,722	+				-0.2
2,264,722	+				-0.8
2,264,722	+				-0.8
2,264,722	+				-1.1
2,264,722	+				-0.6
2,264,722	+				-2.5
2,264,722	+				-0.0
2,264,722	+				-0.0
2,264,722	+				-1.5
2,264,722	+				-0.6
2,264,722	+				-2.2
2,264,722	+				+1.0
2,264,722	+				+0.0
2,264,725	-		GFF2236	0.10	+0.5
2,264,725	-		GFF2236	0.10	-2.2
2,264,725	-		GFF2236	0.10	+0.3
2,264,727	+		GFF2236	0.11	+0.2
2,264,727	+		GFF2236	0.11	-1.3
2,264,727	+		GFF2236	0.11	-0.8
2,264,727	+		GFF2236	0.11	-0.9
2,264,727	+		GFF2236	0.11	-1.3
2,264,727	+		GFF2236	0.11	+0.1
2,264,727	+		GFF2236	0.11	+0.1
2,264,727	+		GFF2236	0.11	-2.6
2,264,730	-		GFF2236	0.13	-0.9
2,264,730	-		GFF2236	0.13	+0.4
2,264,730	-		GFF2236	0.13	+0.4
2,264,730	-		GFF2236	0.13	-1.5
2,264,730	-		GFF2236	0.13	-0.2
2,264,730	-		GFF2236	0.13	-0.7
2,264,730	-		GFF2236	0.13	-0.4
2,264,730	-		GFF2236	0.13	+0.1
2,264,730	-		GFF2236	0.13	-1.1
2,264,735	-		GFF2236	0.16	-0.3
2,264,735	-		GFF2236	0.16	+1.6
2,264,735	-		GFF2236	0.16	+0.7
2,264,735	-		GFF2236	0.16	+0.1
2,264,735	-		GFF2236	0.16	-1.3
2,264,735	-		GFF2236	0.16	-1.5
2,264,735	-		GFF2236	0.16	+1.1
2,264,740	-		GFF2236	0.18	-0.7
2,264,747	+		GFF2236	0.22	-0.5
2,264,760	+		GFF2236	0.29	+0.2
2,264,760	+		GFF2236	0.29	-1.8
2,264,767	+		GFF2236	0.33	-0.5
2,264,768	-		GFF2236	0.33	-1.9
2,264,768	-		GFF2236	0.33	-1.6
2,264,768	-		GFF2236	0.33	+1.5
2,264,819	+		GFF2236	0.61	-0.5
2,264,835	-		GFF2236	0.69	+0.5
2,264,839	+		GFF2236	0.72	+1.3
2,264,847	-		GFF2236	0.76	+0.2
2,264,847	-		GFF2236	0.76	-1.3
2,264,857	-		GFF2236	0.81	-2.2
2,264,874	+				-1.7
2,264,874	+				-0.2
2,264,874	+				-0.3
2,264,882	-				-0.1
2,264,882	-				-0.6
2,264,899	+				-0.8
2,264,901	-				+0.2
2,264,907	-				+0.2
2,264,930	+				-0.8
2,264,930	+				-1.5
2,264,939	-				+0.5
2,264,975	+				-0.5
2,264,975	+				+0.0
2,264,983	+				+0.1
2,264,983	+				-0.3
2,264,983	+				-1.6
2,264,985	-				+0.8
2,264,991	-				+1.0
2,264,998	-				+0.7
2,265,008	-				-0.3
2,265,039	-				-0.4
2,265,045	+				-1.3
2,265,045	+				-0.0
2,265,045	+				+1.8
2,265,045	+				+0.1
2,265,045	+				-0.4
2,265,045	+				-0.3
2,265,050	+				+1.1
2,265,053	-				+1.4
2,265,053	-				+0.1
2,265,053	-				+0.6
2,265,053	-				-0.8
2,265,053	-				+0.5
2,265,053	-				-0.6
2,265,053	-				-2.3
2,265,053	-				-1.9
2,265,053	-				+0.3
2,265,053	-				+1.0
2,265,053	-				-1.0
2,265,058	-				+0.6
2,265,098	+				-1.1
2,265,105	+				+0.7
2,265,113	-				-1.0
2,265,131	-				+0.8
2,265,131	-				-0.3
2,265,133	-				-0.6
2,265,143	-				+0.2
2,265,143	-				-1.0
2,265,143	-				+0.4
2,265,143	-				+0.1
2,265,175	-				-0.1
2,265,187	-				+0.7
2,265,194	+				+0.2
2,265,202	-				-2.3
2,265,206	+				+1.0
2,265,208	-				-1.4
2,265,232	+		GFF2237	0.10	+0.3
2,265,240	-		GFF2237	0.11	+0.1
2,265,243	-		GFF2237	0.11	+0.4
2,265,253	+		GFF2237	0.12	-1.2
2,265,261	-		GFF2237	0.13	-1.4
2,265,261	-		GFF2237	0.13	+0.3
2,265,263	+		GFF2237	0.13	-0.4
2,265,263	+		GFF2237	0.13	+0.6
2,265,263	+		GFF2237	0.13	-1.7
2,265,263	+		GFF2237	0.13	-1.5
2,265,271	-		GFF2237	0.14	+0.9
2,265,271	-		GFF2237	0.14	-1.9
2,265,271	-		GFF2237	0.14	+0.6
2,265,280	+		GFF2237	0.14	+0.3
2,265,315	+		GFF2237	0.17	+0.9
2,265,331	-		GFF2237	0.19	-1.1
2,265,331	-		GFF2237	0.19	+0.9
2,265,351	+		GFF2237	0.21	-0.6
2,265,351	-		GFF2237	0.21	-0.4
2,265,373	+		GFF2237	0.22	-0.4
2,265,378	+		GFF2237	0.23	-1.9
2,265,379	-		GFF2237	0.23	-1.9
2,265,379	-		GFF2237	0.23	-1.9
2,265,381	-		GFF2237	0.23	+0.9
2,265,385	+		GFF2237	0.23	+0.2
2,265,385	+		GFF2237	0.23	+0.3
2,265,386	-		GFF2237	0.24	-0.1
2,265,386	-		GFF2237	0.24	-0.4
2,265,386	-		GFF2237	0.24	+1.0
2,265,388	-		GFF2237	0.24	-0.3
2,265,391	+		GFF2237	0.24	+0.5
2,265,392	+		GFF2237	0.24	-0.1
2,265,393	-		GFF2237	0.24	-0.9
2,265,393	-		GFF2237	0.24	+1.0
2,265,399	-		GFF2237	0.25	-0.3
2,265,400	-		GFF2237	0.25	+0.7
2,265,400	-		GFF2237	0.25	+1.4
2,265,400	-		GFF2237	0.25	+1.0
2,265,400	-		GFF2237	0.25	+0.5
2,265,400	-		GFF2237	0.25	+0.2
2,265,400	-		GFF2237	0.25	+0.7
2,265,400	-		GFF2237	0.25	+1.8
2,265,400	-		GFF2237	0.25	-1.2
2,265,406	+		GFF2237	0.25	-0.5
2,265,410	-		GFF2237	0.26	-0.6
2,265,414	+		GFF2237	0.26	+1.1
2,265,414	-		GFF2237	0.26	-0.5
2,265,481	-		GFF2237	0.32	-0.9
2,265,511	-		GFF2237	0.34	-0.8
2,265,513	+		GFF2237	0.35	+0.5
2,265,530	+		GFF2237	0.36	-0.6
2,265,535	+		GFF2237	0.37	-0.0
2,265,537	+		GFF2237	0.37	-0.5
2,265,537	+		GFF2237	0.37	-0.0
2,265,537	+		GFF2237	0.37	-1.8
2,265,537	+		GFF2237	0.37	-0.6
2,265,537	+		GFF2237	0.37	+0.2
2,265,537	+		GFF2237	0.37	-1.2
2,265,537	+		GFF2237	0.37	+0.4
2,265,537	+		GFF2237	0.37	-1.5
2,265,537	+		GFF2237	0.37	-0.1
2,265,537	+		GFF2237	0.37	+1.3
2,265,537	+		GFF2237	0.37	+0.5
2,265,537	+		GFF2237	0.37	-1.6
2,265,537	+		GFF2237	0.37	+0.4
2,265,537	+		GFF2237	0.37	-1.9
2,265,537	+		GFF2237	0.37	+1.1
2,265,537	+		GFF2237	0.37	+1.7
2,265,542	+		GFF2237	0.37	-0.0
2,265,543	-		GFF2237	0.37	-0.3
2,265,545	-		GFF2237	0.37	-0.7
2,265,545	-		GFF2237	0.37	-0.2
2,265,545	-		GFF2237	0.37	+0.0
2,265,545	-		GFF2237	0.37	-0.2
2,265,545	-		GFF2237	0.37	+1.3
2,265,545	-		GFF2237	0.37	-1.1
2,265,545	-		GFF2237	0.37	+0.1
2,265,545	-		GFF2237	0.37	-1.3
2,265,545	-		GFF2237	0.37	-0.3
2,265,545	-		GFF2237	0.37	-1.6
2,265,545	-		GFF2237	0.37	-0.5
2,265,545	-		GFF2237	0.37	-0.3
2,265,552	+		GFF2237	0.38	+0.1
2,265,552	+		GFF2237	0.38	-1.0
2,265,552	+		GFF2237	0.38	+0.2
2,265,552	+		GFF2237	0.38	-0.3
2,265,559	-		GFF2237	0.39	-0.4
2,265,560	-		GFF2237	0.39	+0.8
2,265,560	-		GFF2237	0.39	-0.3
2,265,560	-		GFF2237	0.39	+1.0
2,265,560	-		GFF2237	0.39	-1.0
2,265,560	-		GFF2237	0.39	-1.9
2,265,560	-		GFF2237	0.39	+0.8
2,265,560	-		GFF2237	0.39	-0.0
2,265,586	-		GFF2237	0.41	+0.1
2,265,586	-		GFF2237	0.41	+0.4
2,265,586	-		GFF2237	0.41	-1.6
2,265,604	-		GFF2237	0.43	-0.3
2,265,610	+		GFF2237	0.43	-1.3
2,265,610	+		GFF2237	0.43	+0.2
2,265,610	+		GFF2237	0.43	+0.7
2,265,621	+		GFF2237	0.44	-0.8
2,265,633	+		GFF2237	0.45	-0.4
2,265,679	+		GFF2237	0.49	-0.7
2,265,684	+		GFF2237	0.50	+0.2
2,265,684	+		GFF2237	0.50	-1.7
2,265,684	+		GFF2237	0.50	-1.9
2,265,687	-		GFF2237	0.50	-0.3
2,265,687	-		GFF2237	0.50	-2.2
2,265,692	-		GFF2237	0.50	+0.7
2,265,697	+		GFF2237	0.51	-0.1
2,265,697	+		GFF2237	0.51	-1.9
2,265,697	-		GFF2237	0.51	+0.5
2,265,714	+		GFF2237	0.52	-0.2
2,265,714	+		GFF2237	0.52	-1.3
2,265,714	+		GFF2237	0.52	+0.1
2,265,722	-		GFF2237	0.53	+0.0
2,265,730	-		GFF2237	0.54	+0.2
2,265,745	+		GFF2237	0.55	+0.2
2,265,745	+		GFF2237	0.55	-1.2
2,265,745	+		GFF2237	0.55	-0.3
2,265,748	-		GFF2237	0.55	-1.1
2,265,748	-		GFF2237	0.55	+0.0
2,265,753	-		GFF2237	0.56	-0.3
2,265,753	-		GFF2237	0.56	-0.3
2,265,753	-		GFF2237	0.56	+0.4
2,265,753	-		GFF2237	0.56	+0.1
2,265,753	-		GFF2237	0.56	-1.1
2,265,758	+		GFF2237	0.56	-0.6
2,265,758	+		GFF2237	0.56	-0.3
2,265,758	+		GFF2237	0.56	+0.3
2,265,758	+		GFF2237	0.56	+0.2
2,265,758	+		GFF2237	0.56	-0.3
2,265,765	+		GFF2237	0.57	-0.5
2,265,766	-		GFF2237	0.57	-1.2
2,265,766	-		GFF2237	0.57	+1.1
2,265,766	-		GFF2237	0.57	+0.1
2,265,766	-		GFF2237	0.57	-0.5
2,265,766	-		GFF2237	0.57	-0.4
2,265,766	-		GFF2237	0.57	-1.0
2,265,781	-		GFF2237	0.58	+0.0
2,265,785	+		GFF2237	0.58	+0.4
2,265,785	+		GFF2237	0.58	+0.7
2,265,785	+		GFF2237	0.58	+0.7
2,265,796	+		GFF2237	0.59	-0.7
2,265,796	+		GFF2237	0.59	-0.3
2,265,804	-		GFF2237	0.60	-0.8
2,265,806	+		GFF2237	0.60	+0.3
2,265,809	-		GFF2237	0.60	-0.0
2,265,809	-		GFF2237	0.60	-0.8
2,265,813	+		GFF2237	0.61	+0.6
2,265,847	-		GFF2237	0.64	+1.0
2,265,892	+		GFF2237	0.68	-1.0
2,265,901	+		GFF2237	0.68	-0.2
2,265,909	+		GFF2237	0.69	-1.3
2,265,925	+		GFF2237	0.70	-2.0
2,265,950	+		GFF2237	0.73	+0.1
2,265,950	+		GFF2237	0.73	+0.4
2,265,955	+		GFF2237	0.73	-1.1
2,265,955	+		GFF2237	0.73	-0.7
2,265,955	+		GFF2237	0.73	+1.0
2,265,955	+		GFF2237	0.73	+0.0
2,265,955	+		GFF2237	0.73	+1.0
2,265,955	+		GFF2237	0.73	+0.3
2,265,955	+		GFF2237	0.73	-0.2
2,265,955	+		GFF2237	0.73	+1.0
2,265,955	+		GFF2237	0.73	-0.2
2,265,958	-		GFF2237	0.73	+0.4
2,265,958	-		GFF2237	0.73	-1.6
2,265,958	-		GFF2237	0.73	+0.9
2,265,963	-		GFF2237	0.74	+0.7
2,265,963	-		GFF2237	0.74	-1.3
2,265,963	-		GFF2237	0.74	+1.4
2,265,963	-		GFF2237	0.74	-0.9
2,265,965	+		GFF2237	0.74	-0.3
2,265,988	+		GFF2237	0.76	-0.4
2,265,997	-		GFF2237	0.77	+0.2
2,266,015	+		GFF2237	0.78	-0.5
2,266,022	+		GFF2237	0.79	+0.5
2,266,022	+		GFF2237	0.79	-1.5
2,266,030	-		GFF2237	0.80	+0.2
2,266,032	+		GFF2237	0.80	-2.2
2,266,032	+		GFF2237	0.80	-0.9
2,266,032	+		GFF2237	0.80	-1.2
2,266,032	+		GFF2237	0.80	-0.1
2,266,032	+		GFF2237	0.80	+0.3
2,266,032	+		GFF2237	0.80	-1.3
2,266,032	+		GFF2237	0.80	-1.9
2,266,032	+		GFF2237	0.80	-1.0
2,266,032	+		GFF2237	0.80	+1.2
2,266,032	+		GFF2237	0.80	-1.7
2,266,032	+		GFF2237	0.80	+0.3
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