Strain Fitness in Sphingobium sp. HT1-2 around GFF2233

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,260,053	-		GFF2232	0.57	+0.2
2,260,054	+		GFF2232	0.57	-0.3
2,260,062	+		GFF2232	0.58	-0.5
2,260,064	+		GFF2232	0.58	+1.0
2,260,064	+		GFF2232	0.58	-0.0
2,260,070	-		GFF2232	0.58	+1.2
2,260,093	-		GFF2232	0.59	+0.6
2,260,093	-		GFF2232	0.59	+0.5
2,260,093	-		GFF2232	0.59	-0.8
2,260,093	-		GFF2232	0.59	-0.3
2,260,103	-		GFF2232	0.60	+0.5
2,260,105	+		GFF2232	0.60	-0.8
2,260,115	+		GFF2232	0.60	-1.0
2,260,115	+		GFF2232	0.60	-0.4
2,260,115	+		GFF2232	0.60	-1.8
2,260,115	+		GFF2232	0.60	-0.4
2,260,115	+		GFF2232	0.60	+0.7
2,260,115	+		GFF2232	0.60	+0.1
2,260,115	+		GFF2232	0.60	-0.4
2,260,115	+		GFF2232	0.60	+0.3
2,260,121	+		GFF2232	0.61	-1.3
2,260,121	+		GFF2232	0.61	-0.4
2,260,121	+		GFF2232	0.61	+0.3
2,260,123	-		GFF2232	0.61	+1.0
2,260,123	-		GFF2232	0.61	+0.7
2,260,123	-		GFF2232	0.61	-1.8
2,260,123	-		GFF2232	0.61	-0.2
2,260,123	-		GFF2232	0.61	-1.5
2,260,123	-		GFF2232	0.61	-1.9
2,260,123	-		GFF2232	0.61	+0.4
2,260,123	-		GFF2232	0.61	-0.3
2,260,127	+		GFF2232	0.61	-2.3
2,260,128	+		GFF2232	0.61	-0.7
2,260,129	-		GFF2232	0.61	-1.0
2,260,135	-		GFF2232	0.61	+0.2
2,260,136	-		GFF2232	0.61	+0.4
2,260,138	+		GFF2232	0.61	-0.7
2,260,138	+		GFF2232	0.61	-1.4
2,260,142	-		GFF2232	0.61	-0.3
2,260,154	-		GFF2232	0.62	-0.9
2,260,168	+		GFF2232	0.63	-1.2
2,260,176	-		GFF2232	0.63	-0.0
2,260,176	-		GFF2232	0.63	-0.2
2,260,178	+		GFF2232	0.63	-0.0
2,260,220	-		GFF2232	0.65	-1.9
2,260,230	-		GFF2232	0.66	+0.5
2,260,241	-		GFF2232	0.66	+0.0
2,260,252	+		GFF2232	0.67	-0.2
2,260,252	+		GFF2232	0.67	+0.3
2,260,260	-		GFF2232	0.67	+0.8
2,260,260	-		GFF2232	0.67	-0.0
2,260,260	-		GFF2232	0.67	-0.9
2,260,262	+		GFF2232	0.67	+0.2
2,260,265	-		GFF2232	0.67	+1.1
2,260,279	+		GFF2232	0.68	-2.0
2,260,292	-		GFF2232	0.68	-0.9
2,260,320	+		GFF2232	0.70	+1.0
2,260,320	+		GFF2232	0.70	+0.2
2,260,320	+		GFF2232	0.70	-0.8
2,260,320	+		GFF2232	0.70	-0.9
2,260,325	+		GFF2232	0.70	+1.1
2,260,325	+		GFF2232	0.70	-0.1
2,260,328	-		GFF2232	0.70	+0.7
2,260,328	-		GFF2232	0.70	-0.3
2,260,328	-		GFF2232	0.70	+0.4
2,260,328	-		GFF2232	0.70	+0.3
2,260,328	-		GFF2232	0.70	-0.6
2,260,328	-		GFF2232	0.70	-0.3
2,260,328	-		GFF2232	0.70	+0.7
2,260,328	-		GFF2232	0.70	-2.2
2,260,333	-		GFF2232	0.70	-0.1
2,260,339	+		GFF2232	0.71	-0.2
2,260,347	-		GFF2232	0.71	+0.6
2,260,347	-		GFF2232	0.71	-1.9
2,260,353	-		GFF2232	0.71	-0.5
2,260,370	+		GFF2232	0.72	-0.6
2,260,380	-		GFF2232	0.72	-0.9
2,260,400	+		GFF2232	0.73	-0.2
2,260,400	+		GFF2232	0.73	+1.0
2,260,402	+		GFF2232	0.74	+0.4
2,260,402	+		GFF2232	0.74	-0.2
2,260,410	+		GFF2232	0.74	+0.2
2,260,418	-		GFF2232	0.74	-0.0
2,260,419	-		GFF2232	0.74	-0.7
2,260,429	-		GFF2232	0.75	+0.2
2,260,446	+		GFF2232	0.76	-2.1
2,260,459	+		GFF2232	0.76	+0.7
2,260,459	+		GFF2232	0.76	-1.6
2,260,459	+		GFF2232	0.76	+0.4
2,260,504	+		GFF2232	0.78	+0.1
2,260,512	-		GFF2232	0.79	+0.8
2,260,534	+		GFF2232	0.80	-0.6
2,260,534	+		GFF2232	0.80	-0.3
2,260,534	+		GFF2232	0.80	+0.2
2,260,534	+		GFF2232	0.80	-1.7
2,260,539	+		GFF2232	0.80	-1.3
2,260,539	+		GFF2232	0.80	-0.0
2,260,539	+		GFF2232	0.80	-1.1
2,260,542	-		GFF2232	0.80	+0.8
2,260,542	-		GFF2232	0.80	-1.9
2,260,552	-		GFF2232	0.80	-1.2
2,260,564	-		GFF2232	0.81	-0.9
2,260,596	+		GFF2232	0.82	-1.2
2,260,596	+		GFF2232	0.82	+0.6
2,260,596	+		GFF2232	0.82	+0.3
2,260,596	+		GFF2232	0.82	+0.5
2,260,604	-		GFF2232	0.83	-1.2
2,260,604	-		GFF2232	0.83	-0.5
2,260,609	-		GFF2232	0.83	+0.3
2,260,632	+		GFF2232	0.84	-1.9
2,260,634	+		GFF2232	0.84	-1.0
2,260,639	+		GFF2232	0.84	-2.9
2,260,640	-		GFF2232	0.85	-1.6
2,260,640	-		GFF2232	0.85	-0.9
2,260,642	-		GFF2232	0.85	-0.3
2,260,647	+		GFF2232	0.85	-0.7
2,260,648	-		GFF2232	0.85	-2.5
2,260,650	-		GFF2232	0.85	-0.8
2,260,652	+		GFF2232	0.85	-0.2
2,260,652	+		GFF2232	0.85	-0.1
2,260,660	-		GFF2232	0.85	-1.1
2,260,678	-		GFF2232	0.86	-1.1
2,260,686	+		GFF2232	0.87	+0.2
2,260,696	+		GFF2232	0.87	+0.7
2,260,696	+		GFF2232	0.87	-1.6
2,260,696	+		GFF2232	0.87	+0.1
2,260,708	+		GFF2232	0.88	-0.3
2,260,743	+		GFF2232	0.89	-0.2
2,260,748	+		GFF2232	0.90	-2.2
2,260,748	+		GFF2232	0.90	-0.5
2,260,753	+		GFF2232	0.90	+1.1
2,260,753	+		GFF2232	0.90	+1.5
2,260,756	-		GFF2232	0.90	+0.3
2,260,761	-				+0.3
2,260,766	+				+0.7
2,260,767	+				-1.2
2,260,768	-				+0.4
2,260,768	-				-1.9
2,260,768	-				-0.8
2,260,768	-				-0.7
2,260,768	-				+0.5
2,260,780	-				-0.4
2,260,796	+				-1.7
2,260,796	+				-2.4
2,260,796	+				-0.4
2,260,796	+				-1.9
2,260,796	+				-0.3
2,260,796	+				+0.7
2,260,796	+				+0.4
2,260,796	+				+0.7
2,260,804	-				+0.2
2,260,804	-				-1.2
2,260,804	-				+0.2
2,260,804	-				-0.0
2,260,809	-				-0.8
2,260,814	-				-0.4
2,260,838	-				-2.2
2,260,864	-				-0.2
2,260,872	+				-0.8
2,260,872	+				+0.7
2,260,872	+				+0.8
2,260,872	+				+0.6
2,260,880	-				+0.6
2,260,880	-				-0.7
2,260,880	-				+1.0
2,260,887	-				-0.6
2,260,891	-				-0.5
2,260,909	+				-0.2
2,260,909	+				-0.9
2,260,927	+				-0.7
2,260,928	+				-2.0
2,260,928	+				+1.2
2,260,935	-				+1.0
2,260,935	-				+0.7
2,260,940	+				-1.2
2,260,940	+				+0.4
2,260,943	-				+1.2
2,260,943	-				-0.0
2,260,943	-				+1.2
2,260,948	-				-0.6
2,260,972	-				-0.3
2,261,014	+				+0.6
2,261,014	+				+0.9
2,261,014	+				-0.2
2,261,015	+				-1.2
2,261,022	-				-0.3
2,261,023	-				+0.5
2,261,042	-				+0.7
2,261,096	-				-0.3
2,261,148	+				-2.9
2,261,151	-				+0.2
2,261,156	-		GFF2233	0.10	+0.7
2,261,166	-		GFF2233	0.11	-0.4
2,261,238	+		GFF2233	0.18	+1.1
2,261,238	+		GFF2233	0.18	-0.0
2,261,242	+		GFF2233	0.18	-1.1
2,261,246	-		GFF2233	0.18	+0.2
2,261,246	-		GFF2233	0.18	-0.2
2,261,272	+		GFF2233	0.21	-1.0
2,261,272	+		GFF2233	0.21	-0.2
2,261,272	+		GFF2233	0.21	-0.1
2,261,272	+		GFF2233	0.21	-2.7
2,261,272	+		GFF2233	0.21	-0.2
2,261,272	+		GFF2233	0.21	+1.0
2,261,272	+		GFF2233	0.21	-1.1
2,261,275	-		GFF2233	0.21	-1.0
2,261,276	-		GFF2233	0.21	-1.6
2,261,277	+		GFF2233	0.21	-1.2
2,261,277	+		GFF2233	0.21	+0.4
2,261,277	+		GFF2233	0.21	+0.0
2,261,280	-		GFF2233	0.22	-0.2
2,261,280	-		GFF2233	0.22	-0.3
2,261,280	-		GFF2233	0.22	-0.9
2,261,280	-		GFF2233	0.22	+0.1
2,261,280	-		GFF2233	0.22	-0.3
2,261,280	-		GFF2233	0.22	-0.9
2,261,280	-		GFF2233	0.22	-1.2
2,261,285	-		GFF2233	0.22	+0.7
2,261,285	-		GFF2233	0.22	+0.1
2,261,285	-		GFF2233	0.22	+0.4
2,261,285	-		GFF2233	0.22	-0.4
2,261,292	+		GFF2233	0.23	-0.9
2,261,322	+		GFF2233	0.26	+1.2
2,261,330	-		GFF2233	0.26	+0.4
2,261,330	-		GFF2233	0.26	+1.8
2,261,332	+		GFF2233	0.26	-0.3
2,261,332	+		GFF2233	0.26	+0.4
2,261,340	-		GFF2233	0.27	-0.8
2,261,345	+		GFF2233	0.28	-0.1
2,261,345	+		GFF2233	0.28	-0.7
2,261,345	+		GFF2233	0.28	-0.3
2,261,411	-		GFF2233	0.34	+0.4
2,261,426	-		GFF2233	0.35	-0.0
2,261,438	-		GFF2233	0.36	-0.7
2,261,442	+		GFF2233	0.37	-1.3
2,261,465	+		GFF2233	0.39	-2.2
2,261,470	+		GFF2233	0.39	-1.5
2,261,472	+		GFF2233	0.39	+0.2
2,261,473	-		GFF2233	0.40	-2.2
2,261,473	-		GFF2233	0.40	-0.1
2,261,480	-		GFF2233	0.40	-1.8
2,261,520	+		GFF2233	0.44	-0.7
2,261,520	+		GFF2233	0.44	+0.7
2,261,525	+		GFF2233	0.44	-0.5
2,261,535	+		GFF2233	0.45	-0.6
2,261,538	-		GFF2233	0.46	-0.6
2,261,543	-		GFF2233	0.46	-0.6
2,261,548	+		GFF2233	0.47	-0.6
2,261,552	+		GFF2233	0.47	-0.3
2,261,592	+		GFF2233	0.51	+0.8
2,261,597	+		GFF2233	0.51	-1.1
2,261,598	+		GFF2233	0.51	-2.6
2,261,600	-		GFF2233	0.51	-0.1
2,261,603	+		GFF2233	0.52	+1.4
2,261,606	-		GFF2233	0.52	-1.5
2,261,611	-		GFF2233	0.52	-0.3
2,261,611	-		GFF2233	0.52	-0.2
2,261,623	+		GFF2233	0.54	+0.9
2,261,623	+		GFF2233	0.54	+0.6
2,261,641	+		GFF2233	0.55	+0.6
2,261,676	-		GFF2233	0.58	-0.1
2,261,677	-		GFF2233	0.59	-1.5
2,261,686	+		GFF2233	0.59	-0.2
2,261,692	+		GFF2233	0.60	-1.7
2,261,694	-		GFF2233	0.60	-0.1
2,261,694	-		GFF2233	0.60	-1.7
2,261,697	+		GFF2233	0.60	+0.3
2,261,702	+		GFF2233	0.61	-0.2
2,261,705	-		GFF2233	0.61	-0.6
2,261,707	+		GFF2233	0.61	+1.1
2,261,707	+		GFF2233	0.61	+0.4
2,261,709	+		GFF2233	0.62	+0.8
2,261,719	+		GFF2233	0.62	+0.2
2,261,737	-		GFF2233	0.64	+1.1
2,261,759	-		GFF2233	0.66	+0.1
2,261,762	+		GFF2233	0.66	+0.7
2,261,767	+		GFF2233	0.67	-1.0
2,261,773	-		GFF2233	0.68	-1.0
2,261,809	-		GFF2233	0.71	-0.3
2,261,811	+		GFF2233	0.71	+0.8
2,261,839	+		GFF2233	0.74	-0.0
2,261,859	+		GFF2233	0.76	-1.3
2,261,866	-		GFF2233	0.76	-1.1
2,261,866	-		GFF2233	0.76	+0.1
2,261,866	-		GFF2233	0.76	-0.1
2,261,877	+		GFF2233	0.77	-0.3
2,261,906	-		GFF2233	0.80	-0.4
2,261,919	-		GFF2233	0.81	-1.1
2,261,919	-		GFF2233	0.81	-1.2
2,261,925	+		GFF2233	0.82	-1.6
2,261,925	+		GFF2233	0.82	-1.2
2,261,925	+		GFF2233	0.82	-0.4
2,261,925	+		GFF2233	0.82	+0.5
2,261,925	+		GFF2233	0.82	-2.5
2,261,933	-		GFF2233	0.82	-0.6
2,261,933	-		GFF2233	0.82	+0.0
2,261,933	-		GFF2233	0.82	+1.1
2,261,933	-		GFF2233	0.82	-1.7
2,261,961	-		GFF2233	0.85	+0.2
2,261,961	-		GFF2233	0.85	-1.1
2,261,961	-		GFF2233	0.85	+0.2
2,261,966	-		GFF2233	0.85	-0.9
2,261,975	+		GFF2233	0.86	-0.3
2,261,999	+		GFF2233	0.89	-0.5
2,261,999	+		GFF2233	0.89	-0.3
2,261,999	+		GFF2233	0.89	-0.9
2,261,999	+		GFF2233	0.89	-0.8
2,262,007	-		GFF2233	0.89	-1.2
2,262,017	-				-0.6
2,262,019	+				-0.3
2,262,044	+				+0.1
2,262,051	+				-0.9
2,262,052	-				+0.9
2,262,059	-				+0.4
2,262,059	-				+1.1
2,262,096	+				-1.1
2,262,122	+				+1.4
2,262,130	-				+0.5
2,262,138	-				+0.5
2,262,178	+				+0.4
2,262,199	+				-1.3
2,262,199	+				-0.1
2,262,199	+				+0.8
2,262,199	+				-0.7
2,262,199	+				-0.5
2,262,199	+				+0.4
2,262,199	+				+0.2
2,262,207	-				-0.8
2,262,207	-				+0.1
2,262,207	-				-2.1
2,262,207	-				-2.3
2,262,207	-				+0.2
2,262,207	-				-0.1
2,262,207	-				-0.4
2,262,236	-				+0.0
2,262,236	-				+1.0
2,262,239	+				-1.4
2,262,239	+				+0.9
2,262,239	+				+0.7
2,262,239	+				+1.5
2,262,239	+				-0.6
2,262,239	+				-0.2
2,262,243	+				-0.3
2,262,247	-				+0.4
2,262,247	-				-0.9
2,262,247	-				-0.2
2,262,247	-				+0.4
2,262,247	-				+0.9
2,262,247	-				-0.5
2,262,247	-				-0.9
2,262,247	-				-1.3
2,262,247	-				-0.6
2,262,247	-				-1.0
2,262,249	-				-0.3
2,262,249	-				-1.5
2,262,249	-				+0.5
2,262,249	-				-0.3
2,262,258	+				+0.7
2,262,258	+				-0.3
2,262,258	+				-0.5
2,262,258	+				-0.7
2,262,258	+				+0.1
2,262,258	+				-0.1
2,262,258	+				-0.9
2,262,258	+				+0.5
2,262,258	+				-0.2
2,262,258	+				-1.3
2,262,258	+				+0.8
2,262,258	+				-1.2
2,262,258	+				+0.2
2,262,258	+				+0.7
2,262,258	+				-0.5
2,262,258	+				+0.5
2,262,258	+				-1.3
2,262,258	+				+0.2
2,262,263	+				-0.3
2,262,266	-				-1.2
2,262,266	-				-1.6
2,262,266	-				+0.8
2,262,266	-				+0.7
2,262,266	-				-0.0
2,262,266	-				-1.4
2,262,266	-				-1.2
2,262,266	-				+0.8
2,262,266	-				-1.5
2,262,266	-				-0.0
2,262,266	-				+0.8
2,262,266	-				-2.2
2,262,266	-				-2.0
2,262,266	-				+0.4
2,262,268	+				+1.1
2,262,268	+				-0.7
2,262,268	+				-0.6
2,262,271	-				-0.0
2,262,276	-				-1.1
2,262,277	-				+0.8
2,262,287	-				-1.5
2,262,292	-				-0.5
2,262,311	-				-0.1
2,262,312	-				-0.5
2,262,312	-				-0.5
2,262,415	+				-1.6
2,262,454	+				-0.1
2,262,518	-				-1.7
2,262,518	-				+0.3
2,262,530	+				-2.9
2,262,530	+				-0.9
2,262,538	-				+0.1
2,262,546	+				+0.2
2,262,546	+				+0.7
2,262,546	+				-0.6
2,262,546	+				-0.2
2,262,546	+				+0.1
2,262,546	+				-0.0
2,262,554	-				-0.3
2,262,554	-				+0.2
2,262,554	-				-2.0
2,262,554	-				+0.9