Strain Fitness in Sphingobium sp. HT1-2 around GFF2229

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,251,661	-		GFF2228	0.37	-0.3
2,251,681	+		GFF2228	0.38	-0.6
2,251,690	+		GFF2228	0.39	-0.7
2,251,699	+		GFF2228	0.40	+0.4
2,251,705	-		GFF2228	0.40	-0.4
2,251,750	-		GFF2228	0.44	-2.3
2,251,770	+		GFF2228	0.45	+0.8
2,251,772	+		GFF2228	0.45	+0.4
2,251,772	+		GFF2228	0.45	+0.7
2,251,780	+		GFF2228	0.46	+1.1
2,251,786	+		GFF2228	0.46	-0.8
2,251,786	+		GFF2228	0.46	-1.7
2,251,786	+		GFF2228	0.46	+0.1
2,251,786	+		GFF2228	0.46	+0.5
2,251,786	+		GFF2228	0.46	-1.3
2,251,786	+		GFF2228	0.46	+0.6
2,251,786	+		GFF2228	0.46	-2.2
2,251,789	-		GFF2228	0.47	+0.2
2,251,794	-		GFF2228	0.47	-0.8
2,251,794	-		GFF2228	0.47	-0.3
2,251,794	-		GFF2228	0.47	-2.5
2,251,794	-		GFF2228	0.47	+0.3
2,251,794	-		GFF2228	0.47	-1.3
2,251,794	-		GFF2228	0.47	-0.1
2,251,794	-		GFF2228	0.47	+0.1
2,251,798	+		GFF2228	0.47	-0.2
2,251,804	-		GFF2228	0.48	-0.6
2,251,804	-		GFF2228	0.48	+0.0
2,251,814	-		GFF2228	0.49	-0.2
2,251,847	+		GFF2228	0.51	+0.2
2,251,850	-		GFF2228	0.51	-1.3
2,251,853	+		GFF2228	0.52	-0.0
2,251,858	+		GFF2228	0.52	-0.6
2,251,861	-		GFF2228	0.52	-0.6
2,251,861	-		GFF2228	0.52	+1.0
2,251,871	-		GFF2228	0.53	-1.3
2,251,876	+		GFF2228	0.53	+0.0
2,251,881	-		GFF2228	0.54	-1.0
2,251,911	-		GFF2228	0.56	+0.1
2,251,911	-		GFF2228	0.56	-0.6
2,251,927	+		GFF2228	0.57	-0.6
2,251,933	-		GFF2228	0.58	-0.8
2,251,933	-		GFF2228	0.58	-1.2
2,251,954	+		GFF2228	0.60	+0.1
2,251,954	+		GFF2228	0.60	-1.7
2,251,960	+		GFF2228	0.60	-0.3
2,251,961	+		GFF2228	0.60	+0.8
2,251,961	-		GFF2228	0.60	-0.8
2,251,971	+		GFF2228	0.61	-1.2
2,251,975	-		GFF2228	0.61	-0.2
2,251,975	-		GFF2228	0.61	-0.8
2,251,975	-		GFF2228	0.61	-0.7
2,251,975	-		GFF2228	0.61	-0.2
2,251,975	-		GFF2228	0.61	-0.2
2,251,990	+		GFF2228	0.62	-1.6
2,251,990	+		GFF2228	0.62	+0.0
2,251,998	-		GFF2228	0.63	-0.0
2,252,002	-		GFF2228	0.63	+0.7
2,252,016	-		GFF2228	0.64	-1.9
2,252,016	-		GFF2228	0.64	-1.3
2,252,033	-		GFF2228	0.66	-0.6
2,252,036	+		GFF2228	0.66	-1.3
2,252,036	+		GFF2228	0.66	+0.1
2,252,044	-		GFF2228	0.67	+0.1
2,252,044	-		GFF2228	0.67	+0.0
2,252,067	-		GFF2228	0.68	-1.9
2,252,114	+		GFF2228	0.72	-0.0
2,252,114	+		GFF2228	0.72	+1.0
2,252,114	+		GFF2228	0.72	+0.4
2,252,114	+		GFF2228	0.72	+1.5
2,252,114	+		GFF2228	0.72	-0.1
2,252,114	+		GFF2228	0.72	-1.2
2,252,154	-		GFF2228	0.75	-1.1
2,252,158	+		GFF2228	0.76	-0.3
2,252,177	-		GFF2228	0.77	-0.3
2,252,185	-		GFF2228	0.78	-1.8
2,252,198	+		GFF2228	0.79	+0.4
2,252,206	-		GFF2228	0.79	+0.6
2,252,206	-		GFF2228	0.79	+1.0
2,252,210	-		GFF2228	0.80	-1.2
2,252,210	-		GFF2228	0.80	+0.6
2,252,210	-		GFF2228	0.80	+0.1
2,252,225	+		GFF2228	0.81	+0.4
2,252,233	-		GFF2228	0.81	+0.6
2,252,270	+		GFF2228	0.84	+0.5
2,252,281	+		GFF2228	0.85	+1.2
2,252,281	+		GFF2228	0.85	+0.1
2,252,289	-		GFF2228	0.86	-1.2
2,252,289	-		GFF2228	0.86	+0.3
2,252,300	-		GFF2228	0.87	+0.1
2,252,313	+		GFF2228	0.88	-2.2
2,252,315	+		GFF2228	0.88	-0.4
2,252,315	+		GFF2228	0.88	-0.8
2,252,315	+		GFF2228	0.88	-0.8
2,252,329	+		GFF2228	0.89	-0.9
2,252,342	-				+1.1
2,252,343	-				-0.2
2,252,343	-				-2.3
2,252,352	+				-1.8
2,252,360	-				-2.3
2,252,365	-				+0.5
2,252,365	-				-1.9
2,252,373	-				-2.0
2,252,382	+				-1.0
2,252,382	+				-2.0
2,252,385	+				-0.3
2,252,385	+				+1.1
2,252,387	+				+0.1
2,252,390	-				-0.4
2,252,392	+				-2.1
2,252,392	+				+0.6
2,252,392	+				-1.3
2,252,392	+				-1.2
2,252,393	-				+0.2
2,252,395	-				-1.0
2,252,395	-				-1.2
2,252,400	-				-0.5
2,252,413	+				+0.6
2,252,418	+				+0.1
2,252,421	-				+1.0
2,252,426	-				-1.5
2,252,451	+				-0.0
2,252,517	+				-0.1
2,252,517	+				-1.7
2,252,517	+				+0.5
2,252,518	+				+1.7
2,252,525	-				+0.1
2,252,525	-				-2.0
2,252,525	-				+0.8
2,252,576	+				-1.2
2,252,588	+				-2.7
2,252,588	+				+0.3
2,252,588	+				+1.6
2,252,588	+				-1.9
2,252,588	+				+0.2
2,252,588	+				+1.1
2,252,588	+				+0.1
2,252,588	+				-1.3
2,252,588	+				+0.2
2,252,588	+				-1.5
2,252,596	-				-1.0
2,252,596	-				-0.2
2,252,596	-				-0.1
2,252,596	-				-0.3
2,252,596	-				+0.5
2,252,596	-				+0.8
2,252,596	-				-0.5
2,252,596	-				+0.5
2,252,596	-				-0.1
2,252,598	+				-1.5
2,252,598	+				+0.3
2,252,598	+				-1.7
2,252,604	+				-0.3
2,252,606	-				-1.6
2,252,614	+				-1.7
2,252,614	+				+0.3
2,252,622	-				+0.9
2,252,622	-				-1.3
2,252,622	-				+1.1
2,252,685	+				+0.2
2,252,709	+				-0.1
2,252,712	-				+0.3
2,252,717	-				-0.0
2,252,722	-				+0.1
2,252,750	+		GFF2229	0.12	-0.8
2,252,757	-		GFF2229	0.12	+0.2
2,252,757	-		GFF2229	0.12	-0.6
2,252,776	+		GFF2229	0.14	-0.5
2,252,784	-		GFF2229	0.15	-0.9
2,252,784	-		GFF2229	0.15	+1.0
2,252,784	-		GFF2229	0.15	-0.5
2,252,784	-		GFF2229	0.15	-0.1
2,252,784	-		GFF2229	0.15	+0.8
2,252,799	-		GFF2229	0.16	-0.1
2,252,808	-		GFF2229	0.17	-0.3
2,252,829	+		GFF2229	0.18	-2.8
2,252,829	+		GFF2229	0.18	+0.3
2,252,829	+		GFF2229	0.18	-0.3
2,252,832	-		GFF2229	0.18	-0.3
2,252,837	-		GFF2229	0.19	-0.4
2,252,837	-		GFF2229	0.19	+0.3
2,252,837	-		GFF2229	0.19	-0.1
2,252,837	-		GFF2229	0.19	-0.9
2,252,868	+		GFF2229	0.21	-0.1
2,252,877	+		GFF2229	0.22	-0.2
2,252,877	+		GFF2229	0.22	+1.6
2,252,885	-		GFF2229	0.23	+0.2
2,252,899	-		GFF2229	0.24	-1.2
2,252,899	-		GFF2229	0.24	+0.3
2,252,924	+		GFF2229	0.26	-0.7
2,252,932	-		GFF2229	0.27	+0.8
2,252,951	+		GFF2229	0.28	-2.0
2,252,955	+		GFF2229	0.29	-0.9
2,252,956	+		GFF2229	0.29	-1.0
2,252,956	+		GFF2229	0.29	-1.6
2,252,956	+		GFF2229	0.29	-1.0
2,252,959	-		GFF2229	0.29	-1.2
2,252,971	+		GFF2229	0.30	-2.2
2,253,018	-		GFF2229	0.34	-0.9
2,253,020	+		GFF2229	0.34	+1.2
2,253,028	+		GFF2229	0.35	+0.1
2,253,048	+		GFF2229	0.36	-0.1
2,253,051	-		GFF2229	0.37	-0.3
2,253,056	-		GFF2229	0.37	-0.3
2,253,061	-		GFF2229	0.37	+0.4
2,253,079	-		GFF2229	0.39	+0.6
2,253,099	+		GFF2229	0.41	-0.2
2,253,116	-		GFF2229	0.42	+0.4
2,253,126	-		GFF2229	0.43	+0.1
2,253,130	-		GFF2229	0.43	-0.0
2,253,133	+		GFF2229	0.43	+0.1
2,253,148	-		GFF2229	0.45	+0.6
2,253,148	-		GFF2229	0.45	-0.7
2,253,158	+		GFF2229	0.45	+0.9
2,253,176	-		GFF2229	0.47	-0.6
2,253,182	-		GFF2229	0.47	-0.8
2,253,188	-		GFF2229	0.48	+1.0
2,253,190	+		GFF2229	0.48	+0.2
2,253,201	-		GFF2229	0.49	-0.8
2,253,204	+		GFF2229	0.49	-1.2
2,253,206	+		GFF2229	0.49	+0.1
2,253,206	+		GFF2229	0.49	-0.2
2,253,211	+		GFF2229	0.50	-0.9
2,253,211	+		GFF2229	0.50	+0.4
2,253,211	+		GFF2229	0.50	-0.9
2,253,211	+		GFF2229	0.50	+0.2
2,253,211	+		GFF2229	0.50	-0.8
2,253,211	+		GFF2229	0.50	-1.2
2,253,211	+		GFF2229	0.50	+0.2
2,253,211	+		GFF2229	0.50	-0.1
2,253,214	-		GFF2229	0.50	-0.2
2,253,214	-		GFF2229	0.50	-0.0
2,253,214	-		GFF2229	0.50	+0.2
2,253,214	-		GFF2229	0.50	-0.9
2,253,219	-		GFF2229	0.50	-1.5
2,253,219	-		GFF2229	0.50	-0.5
2,253,224	-		GFF2229	0.51	+0.4
2,253,230	+		GFF2229	0.51	-1.2
2,253,230	+		GFF2229	0.51	-0.2
2,253,230	+		GFF2229	0.51	-1.3
2,253,230	+		GFF2229	0.51	-0.4
2,253,230	+		GFF2229	0.51	+0.7
2,253,230	+		GFF2229	0.51	-1.2
2,253,230	+		GFF2229	0.51	-0.1
2,253,230	+		GFF2229	0.51	+0.2
2,253,230	+		GFF2229	0.51	-2.4
2,253,230	+		GFF2229	0.51	-0.2
2,253,230	+		GFF2229	0.51	+0.7
2,253,230	+		GFF2229	0.51	+1.1
2,253,230	+		GFF2229	0.51	-0.3
2,253,230	+		GFF2229	0.51	-1.2
2,253,238	-		GFF2229	0.52	+0.9
2,253,238	-		GFF2229	0.52	+0.8
2,253,238	-		GFF2229	0.52	-1.9
2,253,238	-		GFF2229	0.52	+0.5
2,253,238	-		GFF2229	0.52	+0.2
2,253,238	-		GFF2229	0.52	-1.3
2,253,238	-		GFF2229	0.52	+0.4
2,253,238	-		GFF2229	0.52	-0.3
2,253,238	-		GFF2229	0.52	-0.9
2,253,238	-		GFF2229	0.52	+0.4
2,253,238	-		GFF2229	0.52	+0.1
2,253,238	-		GFF2229	0.52	-0.6
2,253,238	-		GFF2229	0.52	-2.3
2,253,238	-		GFF2229	0.52	+1.2
2,253,238	-		GFF2229	0.52	-0.9
2,253,238	-		GFF2229	0.52	-0.3
2,253,238	-		GFF2229	0.52	-1.2
2,253,238	-		GFF2229	0.52	+0.2
2,253,238	-		GFF2229	0.52	-1.7
2,253,238	-		GFF2229	0.52	-1.3
2,253,238	-		GFF2229	0.52	+0.6
2,253,238	-		GFF2229	0.52	+0.3
2,253,238	-		GFF2229	0.52	-0.4
2,253,238	-		GFF2229	0.52	+1.2
2,253,238	-		GFF2229	0.52	+0.3
2,253,238	-		GFF2229	0.52	+1.3
2,253,240	+		GFF2229	0.52	-0.1
2,253,240	+		GFF2229	0.52	-0.2
2,253,240	+		GFF2229	0.52	-0.0
2,253,248	-		GFF2229	0.53	+1.2
2,253,248	-		GFF2229	0.53	-0.5
2,253,248	-		GFF2229	0.53	+0.7
2,253,248	-		GFF2229	0.53	-1.7
2,253,309	-		GFF2229	0.58	-0.2
2,253,338	+		GFF2229	0.60	+0.4
2,253,338	+		GFF2229	0.60	-0.8
2,253,346	-		GFF2229	0.61	-0.7
2,253,346	-		GFF2229	0.61	+0.1
2,253,346	-		GFF2229	0.61	-0.5
2,253,346	-		GFF2229	0.61	-0.9
2,253,351	-		GFF2229	0.61	-0.6
2,253,351	-		GFF2229	0.61	-1.6
2,253,351	-		GFF2229	0.61	+1.2
2,253,383	+		GFF2229	0.64	-0.5
2,253,384	+		GFF2229	0.64	-0.1
2,253,386	+		GFF2229	0.64	-0.8
2,253,386	+		GFF2229	0.64	+0.7
2,253,386	+		GFF2229	0.64	+0.3
2,253,394	-		GFF2229	0.65	-0.6
2,253,416	+		GFF2229	0.67	+0.6
2,253,416	+		GFF2229	0.67	-2.0
2,253,416	+		GFF2229	0.67	+1.0
2,253,416	+		GFF2229	0.67	+0.3
2,253,424	-		GFF2229	0.67	-0.3
2,253,424	-		GFF2229	0.67	-1.5
2,253,430	-		GFF2229	0.68	-0.5
2,253,431	-		GFF2229	0.68	-0.2
2,253,442	+		GFF2229	0.69	+0.1
2,253,454	+		GFF2229	0.70	-0.7
2,253,454	+		GFF2229	0.70	-0.3
2,253,454	+		GFF2229	0.70	-0.1
2,253,454	+		GFF2229	0.70	+0.5
2,253,462	+		GFF2229	0.70	-1.2
2,253,462	-		GFF2229	0.70	+0.1
2,253,462	-		GFF2229	0.70	-1.7
2,253,462	-		GFF2229	0.70	-2.3
2,253,462	-		GFF2229	0.70	+0.3
2,253,462	-		GFF2229	0.70	+0.4
2,253,463	-		GFF2229	0.71	-0.7
2,253,467	+		GFF2229	0.71	-0.1
2,253,532	-		GFF2229	0.76	+1.0
2,253,538	-		GFF2229	0.77	+0.9
2,253,569	+		GFF2229	0.79	-1.3
2,253,599	+		GFF2229	0.82	-0.0
2,253,599	+		GFF2229	0.82	+1.0
2,253,599	+		GFF2229	0.82	+0.1
2,253,599	+		GFF2229	0.82	+0.1
2,253,604	+		GFF2229	0.82	+0.4
2,253,609	+		GFF2229	0.83	-0.2
2,253,609	-		GFF2229	0.83	-2.5
2,253,623	+		GFF2229	0.84	-0.3
2,253,658	+		GFF2229	0.87	-0.9
2,253,660	+		GFF2229	0.87	-0.2
2,253,670	+		GFF2229	0.88	-0.5
2,253,670	+		GFF2229	0.88	-0.2
2,253,670	+		GFF2229	0.88	+1.5
2,253,670	+		GFF2229	0.88	+0.4
2,253,678	+		GFF2229	0.88	-1.1
2,253,686	-		GFF2229	0.89	-0.3
2,253,703	+				-0.2
2,253,704	-				+1.1
2,253,711	-				-0.5
2,253,721	+				+0.1
2,253,723	-				-1.0
2,253,726	+				+0.4
2,253,726	+				+0.2
2,253,728	-				-0.2
2,253,729	-				+1.4
2,253,731	+				-0.2
2,253,734	-				-1.2
2,253,736	-				+0.1
2,253,736	-				+0.1
2,253,738	-				+0.9
2,253,749	-				-1.6
2,253,779	+				-3.2
2,253,803	-				-0.2
2,253,819	+				+0.5
2,253,843	+				-0.1
2,253,914	+				-0.5
2,253,926	-				-0.2
2,253,927	+				-0.5
2,253,927	+				-1.1
2,253,948	-				-0.5
2,253,948	-				+0.1
2,253,963	+				+0.1
2,253,963	+				+0.7
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