Strain Fitness in Sphingobium sp. HT1-2 around GFF2215

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,227,983	+		GFF2214	0.31	-0.4
2,227,983	-		GFF2214	0.31	+0.8
2,227,991	-		GFF2214	0.32	-1.0
2,228,014	+		GFF2214	0.34	+0.4
2,228,022	-		GFF2214	0.35	-0.1
2,228,022	-		GFF2214	0.35	-0.4
2,228,029	+		GFF2214	0.36	-0.3
2,228,032	-		GFF2214	0.37	+0.5
2,228,079	-		GFF2214	0.42	+0.3
2,228,081	+		GFF2214	0.42	+0.1
2,228,083	+		GFF2214	0.43	-0.7
2,228,089	-		GFF2214	0.43	+0.3
2,228,091	+		GFF2214	0.44	-0.8
2,228,149	-		GFF2214	0.51	-0.3
2,228,149	-		GFF2214	0.51	-1.2
2,228,162	-		GFF2214	0.52	-1.7
2,228,186	+		GFF2214	0.55	+0.4
2,228,190	-		GFF2214	0.56	+0.5
2,228,192	-		GFF2214	0.56	-0.5
2,228,199	-		GFF2214	0.57	-0.6
2,228,205	+		GFF2214	0.58	-0.7
2,228,243	+		GFF2214	0.62	+0.7
2,228,263	+		GFF2214	0.65	-0.3
2,228,263	+		GFF2214	0.65	-1.8
2,228,263	+		GFF2214	0.65	-0.3
2,228,263	+		GFF2214	0.65	+0.2
2,228,263	+		GFF2214	0.65	-0.2
2,228,271	-		GFF2214	0.66	+0.5
2,228,271	-		GFF2214	0.66	-1.8
2,228,271	-		GFF2214	0.66	-0.8
2,228,271	-		GFF2214	0.66	-1.5
2,228,271	-		GFF2214	0.66	+0.2
2,228,271	-		GFF2214	0.66	+0.4
2,228,271	-		GFF2214	0.66	-1.5
2,228,303	+		GFF2214	0.70	+0.2
2,228,303	+		GFF2214	0.70	+0.7
2,228,371	+		GFF2214	0.78	-0.9
2,228,374	-		GFF2214	0.78	-0.2
2,228,380	-		GFF2214	0.79	+0.7
2,228,389	-		GFF2214	0.80	-1.2
2,228,390	+		GFF2214	0.80	-0.1
2,228,395	+		GFF2214	0.81	-1.7
2,228,398	-		GFF2214	0.81	+0.4
2,228,403	-		GFF2214	0.82	+0.4
2,228,405	-		GFF2214	0.82	-0.3
2,228,408	-		GFF2214	0.82	-1.2
2,228,417	+		GFF2214	0.84	-0.3
2,228,440	-		GFF2214	0.86	+0.1
2,228,440	-		GFF2214	0.86	+0.4
2,228,440	-		GFF2214	0.86	-1.2
2,228,440	-		GFF2214	0.86	+0.7
2,228,447	-		GFF2214	0.87	-0.1
2,228,483	-				-1.8
2,228,504	-				-0.5
2,228,518	+				-0.4
2,228,519	+				-0.3
2,228,527	+				-1.4
2,228,532	+				-0.1
2,228,535	-				-1.0
2,228,597	+				+0.4
2,228,597	+				-0.5
2,228,597	+				+0.3
2,228,631	-				-0.6
2,228,649	+				-1.9
2,228,677	+				-0.5
2,228,677	+				+0.3
2,228,685	-				-1.3
2,228,685	-				-2.7
2,228,685	-				+1.2
2,228,732	-				-2.0
2,228,737	-				-0.4
2,228,757	+				+0.3
2,228,757	+				-0.6
2,228,766	+				-0.9
2,228,804	+				-1.2
2,228,812	-				-0.2
2,228,885	+				+0.5
2,228,885	+				-1.7
2,228,893	-				+0.7
2,228,893	-				+1.3
2,228,893	-				-0.7
2,228,903	+				-0.2
2,228,911	-				-0.1
2,228,935	+				+0.2
2,228,940	+				+1.2
2,228,943	-				+0.6
2,228,947	+				-0.2
2,228,953	-				+0.1
2,228,955	+				-0.8
2,228,963	-				-2.7
2,229,023	-				-0.6
2,229,023	-				-0.6
2,229,059	+				-0.3
2,229,059	+				-0.8
2,229,074	+				+0.5
2,229,098	+				+0.2
2,229,098	+				-0.9
2,229,099	+				+0.2
2,229,099	+				-0.9
2,229,099	+				+0.0
2,229,099	+				-1.3
2,229,106	-				-1.0
2,229,107	-				+0.4
2,229,112	-				+0.8
2,229,118	+				-0.3
2,229,123	+				+1.6
2,229,123	+				-1.3
2,229,123	+				+1.1
2,229,129	+				+0.1
2,229,133	+				-0.2
2,229,141	+				-0.6
2,229,141	+				-0.4
2,229,141	-				-1.2
2,229,141	-				+0.8
2,229,141	-				+0.3
2,229,147	+		GFF2215	0.10	-0.3
2,229,149	-		GFF2215	0.10	+0.2
2,229,149	-		GFF2215	0.10	-1.9
2,229,149	-		GFF2215	0.10	-2.2
2,229,149	-		GFF2215	0.10	+0.5
2,229,154	-		GFF2215	0.11	+1.0
2,229,154	-		GFF2215	0.11	+1.0
2,229,154	-		GFF2215	0.11	-0.3
2,229,169	+		GFF2215	0.11	+0.5
2,229,177	-		GFF2215	0.12	-1.0
2,229,180	+		GFF2215	0.12	-1.6
2,229,184	+		GFF2215	0.12	-0.0
2,229,199	+		GFF2215	0.13	-0.3
2,229,203	-		GFF2215	0.13	+0.6
2,229,219	+		GFF2215	0.14	-1.3
2,229,227	-		GFF2215	0.15	-1.7
2,229,227	-		GFF2215	0.15	-1.3
2,229,227	-		GFF2215	0.15	+0.1
2,229,261	+		GFF2215	0.17	+0.5
2,229,271	+		GFF2215	0.17	+1.5
2,229,279	-		GFF2215	0.18	-1.2
2,229,279	-		GFF2215	0.18	+1.4
2,229,279	-		GFF2215	0.18	-0.3
2,229,279	-		GFF2215	0.18	-0.5
2,229,279	-		GFF2215	0.18	+0.6
2,229,294	+		GFF2215	0.18	-0.4
2,229,294	+		GFF2215	0.18	-1.4
2,229,302	-		GFF2215	0.19	-0.3
2,229,302	-		GFF2215	0.19	+0.6
2,229,302	-		GFF2215	0.19	+0.2
2,229,304	+		GFF2215	0.19	+0.9
2,229,318	-		GFF2215	0.20	-1.3
2,229,338	-		GFF2215	0.21	-0.4
2,229,348	-		GFF2215	0.21	-1.2
2,229,370	-		GFF2215	0.23	-0.2
2,229,372	-		GFF2215	0.23	-0.3
2,229,372	-		GFF2215	0.23	+0.2
2,229,372	-		GFF2215	0.23	-1.5
2,229,372	-		GFF2215	0.23	-1.5
2,229,397	+		GFF2215	0.24	+0.3
2,229,411	+		GFF2215	0.25	-0.9
2,229,411	+		GFF2215	0.25	-0.5
2,229,411	+		GFF2215	0.25	+0.0
2,229,411	+		GFF2215	0.25	-2.7
2,229,411	+		GFF2215	0.25	-0.7
2,229,411	+		GFF2215	0.25	-0.3
2,229,411	+		GFF2215	0.25	-0.5
2,229,411	-		GFF2215	0.25	+0.2
2,229,419	-		GFF2215	0.25	-0.5
2,229,419	-		GFF2215	0.25	-0.3
2,229,419	-		GFF2215	0.25	-0.7
2,229,434	+		GFF2215	0.26	-2.1
2,229,434	+		GFF2215	0.26	-1.5
2,229,434	+		GFF2215	0.26	-2.4
2,229,435	-		GFF2215	0.26	+0.8
2,229,442	-		GFF2215	0.27	+0.1
2,229,450	-		GFF2215	0.27	-0.6
2,229,450	-		GFF2215	0.27	-0.1
2,229,458	+		GFF2215	0.27	+0.5
2,229,458	-		GFF2215	0.27	-1.1
2,229,466	-		GFF2215	0.28	+0.4
2,229,466	-		GFF2215	0.28	-1.1
2,229,466	-		GFF2215	0.28	-0.8
2,229,487	+		GFF2215	0.29	-1.3
2,229,492	+		GFF2215	0.29	-0.1
2,229,492	+		GFF2215	0.29	+0.6
2,229,495	-		GFF2215	0.29	+1.1
2,229,495	-		GFF2215	0.29	+1.1
2,229,530	+		GFF2215	0.31	-0.7
2,229,658	-		GFF2215	0.38	-1.4
2,229,665	-		GFF2215	0.39	-2.5
2,229,665	-		GFF2215	0.39	+0.5
2,229,673	+		GFF2215	0.39	-0.9
2,229,675	-		GFF2215	0.39	-1.5
2,229,680	+		GFF2215	0.40	-0.3
2,229,680	+		GFF2215	0.40	-0.1
2,229,680	+		GFF2215	0.40	+0.8
2,229,688	-		GFF2215	0.40	+0.9
2,229,688	-		GFF2215	0.40	-1.9
2,229,712	-		GFF2215	0.41	-0.9
2,229,728	+		GFF2215	0.42	-0.3
2,229,731	-		GFF2215	0.42	-0.4
2,229,773	-		GFF2215	0.45	-0.5
2,229,773	-		GFF2215	0.45	-1.1
2,229,794	+		GFF2215	0.46	+0.6
2,229,825	+		GFF2215	0.48	-0.8
2,229,825	+		GFF2215	0.48	+0.5
2,229,825	+		GFF2215	0.48	-0.0
2,229,825	+		GFF2215	0.48	-1.3
2,229,830	+		GFF2215	0.48	-0.7
2,229,830	+		GFF2215	0.48	-1.3
2,229,830	+		GFF2215	0.48	+0.2
2,229,833	-		GFF2215	0.48	-1.9
2,229,833	-		GFF2215	0.48	+0.0
2,229,835	+		GFF2215	0.48	+0.0
2,229,877	+		GFF2215	0.50	+0.6
2,229,895	+		GFF2215	0.51	-0.5
2,229,896	+		GFF2215	0.51	+0.1
2,229,896	+		GFF2215	0.51	-0.2
2,229,912	+		GFF2215	0.52	+0.8
2,229,912	+		GFF2215	0.52	-0.8
2,229,919	-		GFF2215	0.53	+0.0
2,229,920	-		GFF2215	0.53	+0.1
2,229,932	+		GFF2215	0.53	+0.6
2,229,957	+		GFF2215	0.55	-0.8
2,229,986	-		GFF2215	0.56	-0.7
2,229,986	-		GFF2215	0.56	+0.4
2,230,011	-		GFF2215	0.58	-0.2
2,230,018	-		GFF2215	0.58	+0.7
2,230,049	+		GFF2215	0.60	+0.1
2,230,049	+		GFF2215	0.60	-0.3
2,230,054	+		GFF2215	0.60	+0.2
2,230,054	+		GFF2215	0.60	-0.2
2,230,062	-		GFF2215	0.61	-1.4
2,230,082	+		GFF2215	0.62	-2.1
2,230,096	-		GFF2215	0.62	+0.6
2,230,106	+		GFF2215	0.63	+0.1
2,230,142	-		GFF2215	0.65	+0.7
2,230,194	-		GFF2215	0.68	+1.1
2,230,218	-		GFF2215	0.69	-2.2
2,230,255	+		GFF2215	0.71	+1.2
2,230,255	+		GFF2215	0.71	+0.1
2,230,260	+		GFF2215	0.72	-1.0
2,230,260	+		GFF2215	0.72	+0.2
2,230,260	+		GFF2215	0.72	-0.2
2,230,260	+		GFF2215	0.72	+0.4
2,230,260	+		GFF2215	0.72	-0.7
2,230,260	+		GFF2215	0.72	+1.4
2,230,260	+		GFF2215	0.72	-0.6
2,230,260	+		GFF2215	0.72	-0.4
2,230,260	+		GFF2215	0.72	-1.4
2,230,260	+		GFF2215	0.72	+0.7
2,230,260	+		GFF2215	0.72	-0.6
2,230,260	+		GFF2215	0.72	-0.8
2,230,260	+		GFF2215	0.72	-0.7
2,230,260	+		GFF2215	0.72	-0.3
2,230,260	+		GFF2215	0.72	+0.0
2,230,260	+		GFF2215	0.72	-1.3
2,230,260	+		GFF2215	0.72	+1.1
2,230,260	+		GFF2215	0.72	-0.6
2,230,260	+		GFF2215	0.72	+0.8
2,230,260	+		GFF2215	0.72	+1.0
2,230,260	+		GFF2215	0.72	+0.1
2,230,261	-		GFF2215	0.72	+0.5
2,230,268	-		GFF2215	0.72	-0.1
2,230,268	-		GFF2215	0.72	-0.4
2,230,268	-		GFF2215	0.72	-0.5
2,230,268	-		GFF2215	0.72	-1.4
2,230,268	-		GFF2215	0.72	+0.8
2,230,268	-		GFF2215	0.72	+0.5
2,230,268	-		GFF2215	0.72	-0.7
2,230,268	-		GFF2215	0.72	-1.5
2,230,268	-		GFF2215	0.72	-0.0
2,230,268	-		GFF2215	0.72	+1.5
2,230,268	-		GFF2215	0.72	+1.5
2,230,268	-		GFF2215	0.72	-0.7
2,230,268	-		GFF2215	0.72	-2.2
2,230,268	-		GFF2215	0.72	-0.9
2,230,268	-		GFF2215	0.72	-0.2
2,230,268	-		GFF2215	0.72	+0.5
2,230,268	-		GFF2215	0.72	+0.1
2,230,268	-		GFF2215	0.72	-0.3
2,230,268	-		GFF2215	0.72	-1.8
2,230,268	-		GFF2215	0.72	+0.6
2,230,271	+		GFF2215	0.72	-1.1
2,230,271	+		GFF2215	0.72	-1.8
2,230,271	+		GFF2215	0.72	-0.6
2,230,271	+		GFF2215	0.72	+0.9
2,230,273	+		GFF2215	0.72	-1.2
2,230,278	-		GFF2215	0.72	+0.7
2,230,279	-		GFF2215	0.73	-0.8
2,230,279	-		GFF2215	0.73	-0.8
2,230,334	-		GFF2215	0.76	+0.9
2,230,338	-		GFF2215	0.76	-2.7
2,230,340	-		GFF2215	0.76	+0.1
2,230,340	-		GFF2215	0.76	-0.0
2,230,351	-		GFF2215	0.77	+0.0
2,230,393	+		GFF2215	0.79	-1.9
2,230,419	+		GFF2215	0.80	+1.1
2,230,432	+		GFF2215	0.81	+0.7
2,230,432	+		GFF2215	0.81	-0.1
2,230,432	+		GFF2215	0.81	-0.9
2,230,440	-		GFF2215	0.81	-0.2
2,230,440	-		GFF2215	0.81	+1.0
2,230,440	-		GFF2215	0.81	-1.2
2,230,440	-		GFF2215	0.81	-0.3
2,230,440	-		GFF2215	0.81	-0.4
2,230,440	-		GFF2215	0.81	+0.7
2,230,440	-		GFF2215	0.81	+0.3
2,230,449	+		GFF2215	0.82	+0.6
2,230,449	+		GFF2215	0.82	-0.7
2,230,449	+		GFF2215	0.82	+1.1
2,230,449	+		GFF2215	0.82	+0.8
2,230,457	-		GFF2215	0.82	+1.0
2,230,457	-		GFF2215	0.82	-1.1
2,230,457	-		GFF2215	0.82	+0.5
2,230,457	-		GFF2215	0.82	-0.2
2,230,457	-		GFF2215	0.82	-0.8
2,230,477	+		GFF2215	0.83	-0.5
2,230,511	+		GFF2215	0.85	+0.3
2,230,529	-		GFF2215	0.86	+0.5
2,230,542	+		GFF2215	0.87	+0.1
2,230,547	+		GFF2215	0.87	-0.9
2,230,550	-		GFF2215	0.87	-1.0
2,230,550	-		GFF2215	0.87	-0.8
2,230,552	+		GFF2215	0.88	-2.1
2,230,552	+		GFF2215	0.88	-1.5
2,230,552	+		GFF2215	0.88	+0.1
2,230,560	-		GFF2215	0.88	+0.1
2,230,577	-		GFF2215	0.89	-0.6
2,230,577	-		GFF2215	0.89	+0.1
2,230,579	+		GFF2215	0.89	+0.2
2,230,579	+		GFF2215	0.89	-1.6
2,230,579	+		GFF2215	0.89	-1.8
2,230,579	+		GFF2215	0.89	+1.9
2,230,579	+		GFF2215	0.89	-1.6
2,230,579	+		GFF2215	0.89	-1.5
2,230,579	+		GFF2215	0.89	-0.4
2,230,587	-		GFF2215	0.89	-0.3
2,230,587	-		GFF2215	0.89	+1.2
2,230,587	-		GFF2215	0.89	-1.9
2,230,587	-		GFF2215	0.89	+0.9
2,230,587	-		GFF2215	0.89	+0.4
2,230,587	-		GFF2215	0.89	+0.1
2,230,608	+				+0.0
2,230,613	+				-0.3
2,230,614	+				-0.9
2,230,639	-				+0.8
2,230,640	-				-0.9
2,230,684	+				-1.6
2,230,685	+				-0.5
2,230,685	+				+0.3
2,230,687	-				+1.4
2,230,693	-				+0.7
2,230,693	-				-0.8
2,230,694	-				+1.3
2,230,698	+				+1.8
2,230,718	-				+0.1
2,230,769	+				-1.0
2,230,778	+				-0.3
2,230,782	-				-0.9
2,230,787	-				+0.7
2,230,852	+				-1.4
2,230,911	-		GFF2216	0.17	+0.3
2,230,928	+		GFF2216	0.19	+0.3
2,230,928	+		GFF2216	0.19	-0.2
2,230,936	+		GFF2216	0.20	+1.5
2,230,936	-		GFF2216	0.20	+0.3
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