Strain Fitness in Sphingobium sp. HT1-2 around GFF2214

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,226,779	+		GFF2211	0.83	+1.1
2,226,798	+		GFF2211	0.85	-1.0
2,226,801	-		GFF2211	0.85	-2.3
2,226,802	+		GFF2211	0.85	+0.2
2,226,810	-		GFF2211	0.86	-1.1
2,226,810	-		GFF2211	0.86	-0.6
2,226,861	-				+0.6
2,226,876	-				-1.2
2,226,929	+				+0.5
2,226,929	+				-0.1
2,226,937	-				-0.3
2,226,967	+				-0.9
2,226,967	+				-2.8
2,226,968	-				-1.9
2,226,968	-				+0.5
2,226,992	+		GFF2212	0.12	-1.7
2,227,034	+		GFF2212	0.29	-1.2
2,227,042	-		GFF2212	0.33	-0.2
2,227,060	-		GFF2212	0.40	-0.6
2,227,063	-		GFF2212	0.41	-0.2
2,227,063	-		GFF2212	0.41	+0.9
2,227,100	-		GFF2212	0.57	-0.5
2,227,105	-		GFF2212	0.59	+1.6
2,227,113	+		GFF2212	0.62	+0.7
2,227,120	-		GFF2212	0.65	+0.8
2,227,121	-		GFF2212	0.65	-1.1
2,227,139	+		GFF2212	0.73	+0.3
2,227,139	-		GFF2212	0.73	-1.6
2,227,148	-		GFF2212	0.77	+0.3
2,227,153	-		GFF2212	0.79	-2.7
2,227,163	+		GFF2212	0.83	+0.1
2,227,164	-		GFF2212	0.83	-0.9
2,227,164	-		GFF2212	0.83	-1.7
2,227,171	-		GFF2212	0.86	-1.2
2,227,173	+		GFF2212	0.87	+1.5
2,227,179	+		GFF2212	0.90	-0.4
2,227,179	-		GFF2212	0.90	+0.2
2,227,187	-				+0.6
2,227,192	-				-0.5
2,227,223	+				-1.5
2,227,256	-				-0.4
2,227,302	+		GFF2213	0.19	-0.5
2,227,338	+		GFF2213	0.25	-0.1
2,227,346	-		GFF2213	0.27	-1.3
2,227,392	+		GFF2213	0.35	+0.6
2,227,400	-		GFF2213	0.37	+0.8
2,227,400	-		GFF2213	0.37	+1.4
2,227,433	-		GFF2213	0.43	-0.1
2,227,460	+		GFF2213	0.48	-0.7
2,227,485	-		GFF2213	0.53	-1.9
2,227,506	+		GFF2213	0.57	+0.0
2,227,506	+		GFF2213	0.57	+0.0
2,227,514	-		GFF2213	0.58	-0.5
2,227,514	-		GFF2213	0.58	+0.1
2,227,541	-		GFF2213	0.63	+0.1
2,227,569	+		GFF2213	0.69	-1.6
2,227,606	-		GFF2213	0.75	-0.1
2,227,617	+		GFF2213	0.78	-0.0
2,227,619	+		GFF2213	0.78	-0.3
2,227,629	+		GFF2213	0.80	+0.3
2,227,629	+		GFF2213	0.80	+0.4
2,227,654	+		GFF2213	0.84	-0.0
2,227,662	-		GFF2213	0.86	+0.3
2,227,679	+		GFF2213	0.89	-0.3
2,227,679	+		GFF2213	0.89	+0.0
2,227,687	-				-0.5
2,227,713	-				-1.0
2,227,721	+				+1.1
2,227,723	-				+1.4
2,227,723	-				-0.7
2,227,730	+				-1.3
2,227,730	+				+0.9
2,227,731	+				-1.0
2,227,731	-				-0.1
2,227,801	-				-0.5
2,227,828	+		GFF2214	0.12	-0.0
2,227,833	+		GFF2214	0.12	-0.2
2,227,878	+		GFF2214	0.18	-0.7
2,227,878	+		GFF2214	0.18	+0.4
2,227,904	-		GFF2214	0.21	+0.2
2,227,929	-		GFF2214	0.24	+0.1
2,227,929	-		GFF2214	0.24	-0.8
2,227,951	+		GFF2214	0.27	-0.0
2,227,954	-		GFF2214	0.27	-0.3
2,227,954	-		GFF2214	0.27	-0.1
2,227,954	-		GFF2214	0.27	-1.4
2,227,954	-		GFF2214	0.27	-0.1
2,227,983	+		GFF2214	0.31	-0.4
2,227,983	-		GFF2214	0.31	+0.8
2,227,991	-		GFF2214	0.32	-1.0
2,228,014	+		GFF2214	0.34	+0.4
2,228,022	-		GFF2214	0.35	-0.1
2,228,022	-		GFF2214	0.35	-0.4
2,228,029	+		GFF2214	0.36	-0.3
2,228,032	-		GFF2214	0.37	+0.5
2,228,079	-		GFF2214	0.42	+0.3
2,228,081	+		GFF2214	0.42	+0.1
2,228,083	+		GFF2214	0.43	-0.7
2,228,089	-		GFF2214	0.43	+0.3
2,228,091	+		GFF2214	0.44	-0.8
2,228,149	-		GFF2214	0.51	-0.3
2,228,149	-		GFF2214	0.51	-1.2
2,228,162	-		GFF2214	0.52	-1.7
2,228,186	+		GFF2214	0.55	+0.4
2,228,190	-		GFF2214	0.56	+0.5
2,228,192	-		GFF2214	0.56	-0.5
2,228,199	-		GFF2214	0.57	-0.6
2,228,205	+		GFF2214	0.58	-0.7
2,228,243	+		GFF2214	0.62	+0.7
2,228,263	+		GFF2214	0.65	-0.3
2,228,263	+		GFF2214	0.65	-1.8
2,228,263	+		GFF2214	0.65	-0.3
2,228,263	+		GFF2214	0.65	+0.2
2,228,263	+		GFF2214	0.65	-0.2
2,228,271	-		GFF2214	0.66	+0.5
2,228,271	-		GFF2214	0.66	-1.8
2,228,271	-		GFF2214	0.66	-0.8
2,228,271	-		GFF2214	0.66	-1.5
2,228,271	-		GFF2214	0.66	+0.2
2,228,271	-		GFF2214	0.66	+0.4
2,228,271	-		GFF2214	0.66	-1.5
2,228,303	+		GFF2214	0.70	+0.2
2,228,303	+		GFF2214	0.70	+0.7
2,228,371	+		GFF2214	0.78	-0.9
2,228,374	-		GFF2214	0.78	-0.2
2,228,380	-		GFF2214	0.79	+0.7
2,228,389	-		GFF2214	0.80	-1.2
2,228,390	+		GFF2214	0.80	-0.1
2,228,395	+		GFF2214	0.81	-1.7
2,228,398	-		GFF2214	0.81	+0.4
2,228,403	-		GFF2214	0.82	+0.4
2,228,405	-		GFF2214	0.82	-0.3
2,228,408	-		GFF2214	0.82	-1.2
2,228,417	+		GFF2214	0.84	-0.3
2,228,440	-		GFF2214	0.86	+0.1
2,228,440	-		GFF2214	0.86	+0.4
2,228,440	-		GFF2214	0.86	-1.2
2,228,440	-		GFF2214	0.86	+0.7
2,228,447	-		GFF2214	0.87	-0.1
2,228,483	-				-1.8
2,228,504	-				-0.5
2,228,518	+				-0.4
2,228,519	+				-0.3
2,228,527	+				-1.4
2,228,532	+				-0.1
2,228,535	-				-1.0
2,228,597	+				+0.4
2,228,597	+				-0.5
2,228,597	+				+0.3
2,228,631	-				-0.6
2,228,649	+				-1.9
2,228,677	+				-0.5
2,228,677	+				+0.3
2,228,685	-				-1.3
2,228,685	-				-2.7
2,228,685	-				+1.2
2,228,732	-				-2.0
2,228,737	-				-0.4
2,228,757	+				+0.3
2,228,757	+				-0.6
2,228,766	+				-0.9
2,228,804	+				-1.2
2,228,812	-				-0.2
2,228,885	+				+0.5
2,228,885	+				-1.7
2,228,893	-				+0.7
2,228,893	-				+1.3
2,228,893	-				-0.7
2,228,903	+				-0.2
2,228,911	-				-0.1
2,228,935	+				+0.2
2,228,940	+				+1.2
2,228,943	-				+0.6
2,228,947	+				-0.2
2,228,953	-				+0.1
2,228,955	+				-0.8
2,228,963	-				-2.7
2,229,023	-				-0.6
2,229,023	-				-0.6
2,229,059	+				-0.3
2,229,059	+				-0.8
2,229,074	+				+0.5
2,229,098	+				+0.2
2,229,098	+				-0.9
2,229,099	+				+0.2
2,229,099	+				-0.9
2,229,099	+				+0.0
2,229,099	+				-1.3
2,229,106	-				-1.0
2,229,107	-				+0.4
2,229,112	-				+0.8
2,229,118	+				-0.3
2,229,123	+				+1.6
2,229,123	+				-1.3
2,229,123	+				+1.1
2,229,129	+				+0.1
2,229,133	+				-0.2
2,229,141	+				-0.6
2,229,141	+				-0.4
2,229,141	-				-1.2
2,229,141	-				+0.8
2,229,141	-				+0.3
2,229,147	+		GFF2215	0.10	-0.3
2,229,149	-		GFF2215	0.10	+0.2
2,229,149	-		GFF2215	0.10	-1.9
2,229,149	-		GFF2215	0.10	-2.2
2,229,149	-		GFF2215	0.10	+0.5
2,229,154	-		GFF2215	0.11	+1.0
2,229,154	-		GFF2215	0.11	+1.0
2,229,154	-		GFF2215	0.11	-0.3
2,229,169	+		GFF2215	0.11	+0.5
2,229,177	-		GFF2215	0.12	-1.0
2,229,180	+		GFF2215	0.12	-1.6
2,229,184	+		GFF2215	0.12	-0.0
2,229,199	+		GFF2215	0.13	-0.3
2,229,203	-		GFF2215	0.13	+0.6
2,229,219	+		GFF2215	0.14	-1.3
2,229,227	-		GFF2215	0.15	-1.7
2,229,227	-		GFF2215	0.15	-1.3
2,229,227	-		GFF2215	0.15	+0.1
2,229,261	+		GFF2215	0.17	+0.5
2,229,271	+		GFF2215	0.17	+1.5
2,229,279	-		GFF2215	0.18	-1.2
2,229,279	-		GFF2215	0.18	+1.4
2,229,279	-		GFF2215	0.18	-0.3
2,229,279	-		GFF2215	0.18	-0.5
2,229,279	-		GFF2215	0.18	+0.6
2,229,294	+		GFF2215	0.18	-0.4
2,229,294	+		GFF2215	0.18	-1.4
2,229,302	-		GFF2215	0.19	-0.3
2,229,302	-		GFF2215	0.19	+0.6
2,229,302	-		GFF2215	0.19	+0.2
2,229,304	+		GFF2215	0.19	+0.9
2,229,318	-		GFF2215	0.20	-1.3
2,229,338	-		GFF2215	0.21	-0.4
2,229,348	-		GFF2215	0.21	-1.2
2,229,370	-		GFF2215	0.23	-0.2
2,229,372	-		GFF2215	0.23	-0.3
2,229,372	-		GFF2215	0.23	+0.2
2,229,372	-		GFF2215	0.23	-1.5
2,229,372	-		GFF2215	0.23	-1.5
2,229,397	+		GFF2215	0.24	+0.3
2,229,411	+		GFF2215	0.25	-0.9
2,229,411	+		GFF2215	0.25	-0.5
2,229,411	+		GFF2215	0.25	+0.0
2,229,411	+		GFF2215	0.25	-2.7
2,229,411	+		GFF2215	0.25	-0.7
2,229,411	+		GFF2215	0.25	-0.3
2,229,411	+		GFF2215	0.25	-0.5
2,229,411	-		GFF2215	0.25	+0.2
2,229,419	-		GFF2215	0.25	-0.5
2,229,419	-		GFF2215	0.25	-0.3
2,229,419	-		GFF2215	0.25	-0.7
2,229,434	+		GFF2215	0.26	-2.1
2,229,434	+		GFF2215	0.26	-1.5
2,229,434	+		GFF2215	0.26	-2.4
2,229,435	-		GFF2215	0.26	+0.8
2,229,442	-		GFF2215	0.27	+0.1
2,229,450	-		GFF2215	0.27	-0.6
2,229,450	-		GFF2215	0.27	-0.1
2,229,458	+		GFF2215	0.27	+0.5
2,229,458	-		GFF2215	0.27	-1.1
2,229,466	-		GFF2215	0.28	+0.4
2,229,466	-		GFF2215	0.28	-1.1
2,229,466	-		GFF2215	0.28	-0.8
2,229,487	+		GFF2215	0.29	-1.3
2,229,492	+		GFF2215	0.29	-0.1
2,229,492	+		GFF2215	0.29	+0.6
2,229,495	-		GFF2215	0.29	+1.1
2,229,495	-		GFF2215	0.29	+1.1
2,229,530	+		GFF2215	0.31	-0.7