Strain Fitness in Sphingobium sp. HT1-2 around GFF2212

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,225,991	+		GFF2211	0.13	-1.0
2,225,999	-		GFF2211	0.14	-0.4
2,225,999	-		GFF2211	0.14	+0.7
2,226,022	+		GFF2211	0.16	-0.8
2,226,030	-		GFF2211	0.16	-0.2
2,226,030	-		GFF2211	0.16	-1.9
2,226,030	-		GFF2211	0.16	-2.1
2,226,036	+		GFF2211	0.17	-0.6
2,226,065	-		GFF2211	0.20	+0.5
2,226,070	-		GFF2211	0.20	+0.4
2,226,083	+		GFF2211	0.21	+2.1
2,226,093	+		GFF2211	0.22	-0.2
2,226,093	-		GFF2211	0.22	-0.0
2,226,122	-		GFF2211	0.25	+1.0
2,226,144	-		GFF2211	0.27	-2.9
2,226,151	+		GFF2211	0.27	+0.5
2,226,151	+		GFF2211	0.27	+0.2
2,226,157	+		GFF2211	0.28	-0.4
2,226,159	-		GFF2211	0.28	+0.0
2,226,159	-		GFF2211	0.28	-1.8
2,226,159	-		GFF2211	0.28	-1.2
2,226,160	-		GFF2211	0.28	-1.0
2,226,162	+		GFF2211	0.28	+0.4
2,226,162	+		GFF2211	0.28	-1.3
2,226,162	+		GFF2211	0.28	-0.6
2,226,162	+		GFF2211	0.28	-0.2
2,226,177	-		GFF2211	0.30	-0.9
2,226,179	-		GFF2211	0.30	-0.8
2,226,192	+		GFF2211	0.31	+0.9
2,226,192	+		GFF2211	0.31	+0.8
2,226,192	+		GFF2211	0.31	-0.0
2,226,192	+		GFF2211	0.31	-0.2
2,226,197	+		GFF2211	0.31	+0.4
2,226,200	-		GFF2211	0.32	-2.8
2,226,200	-		GFF2211	0.32	+0.4
2,226,200	-		GFF2211	0.32	-1.2
2,226,200	-		GFF2211	0.32	+1.1
2,226,200	-		GFF2211	0.32	-0.0
2,226,200	-		GFF2211	0.32	-0.8
2,226,200	-		GFF2211	0.32	-0.9
2,226,204	+		GFF2211	0.32	-0.1
2,226,212	-		GFF2211	0.33	-1.5
2,226,214	-		GFF2211	0.33	-0.3
2,226,220	+		GFF2211	0.33	-0.7
2,226,223	-		GFF2211	0.34	+0.7
2,226,223	-		GFF2211	0.34	-0.5
2,226,231	-		GFF2211	0.34	-0.5
2,226,240	+		GFF2211	0.35	+0.3
2,226,250	+		GFF2211	0.36	-0.9
2,226,271	+		GFF2211	0.38	+0.7
2,226,271	+		GFF2211	0.38	-0.9
2,226,273	+		GFF2211	0.38	+0.8
2,226,279	-		GFF2211	0.39	-1.7
2,226,279	-		GFF2211	0.39	-0.4
2,226,305	+		GFF2211	0.41	-0.6
2,226,305	+		GFF2211	0.41	-0.1
2,226,313	-		GFF2211	0.42	-0.2
2,226,332	+		GFF2211	0.43	+1.5
2,226,332	+		GFF2211	0.43	+0.3
2,226,341	-		GFF2211	0.44	+0.3
2,226,350	+		GFF2211	0.45	+0.0
2,226,358	-		GFF2211	0.46	-2.3
2,226,383	+		GFF2211	0.48	+0.7
2,226,391	-		GFF2211	0.48	-0.1
2,226,400	-		GFF2211	0.49	-0.8
2,226,402	+		GFF2211	0.49	+0.1
2,226,426	-		GFF2211	0.52	-0.2
2,226,441	+		GFF2211	0.53	-2.5
2,226,447	-		GFF2211	0.53	+0.4
2,226,449	+		GFF2211	0.54	-1.7
2,226,449	+		GFF2211	0.54	+0.1
2,226,449	-		GFF2211	0.54	-0.5
2,226,451	+		GFF2211	0.54	+0.1
2,226,477	+		GFF2211	0.56	+0.6
2,226,530	+		GFF2211	0.61	+1.7
2,226,531	-		GFF2211	0.61	-1.2
2,226,531	-		GFF2211	0.61	-0.1
2,226,532	+		GFF2211	0.61	+0.2
2,226,532	+		GFF2211	0.61	-0.9
2,226,532	+		GFF2211	0.61	-1.7
2,226,532	+		GFF2211	0.61	+0.3
2,226,534	-		GFF2211	0.61	+0.3
2,226,540	-		GFF2211	0.62	-1.8
2,226,540	-		GFF2211	0.62	-0.5
2,226,555	-		GFF2211	0.63	-0.3
2,226,558	-		GFF2211	0.63	-0.4
2,226,571	+		GFF2211	0.64	-1.7
2,226,571	+		GFF2211	0.64	+0.2
2,226,571	+		GFF2211	0.64	-1.9
2,226,571	+		GFF2211	0.64	+0.2
2,226,571	+		GFF2211	0.64	+0.3
2,226,571	+		GFF2211	0.64	-0.2
2,226,571	+		GFF2211	0.64	-1.6
2,226,571	+		GFF2211	0.64	-0.1
2,226,571	+		GFF2211	0.64	-0.2
2,226,571	+		GFF2211	0.64	+1.2
2,226,571	+		GFF2211	0.64	+1.3
2,226,571	+		GFF2211	0.64	+0.5
2,226,571	+		GFF2211	0.64	-1.2
2,226,571	+		GFF2211	0.64	-0.1
2,226,574	-		GFF2211	0.65	+0.6
2,226,579	-		GFF2211	0.65	+0.1
2,226,579	-		GFF2211	0.65	+0.2
2,226,579	-		GFF2211	0.65	-0.2
2,226,579	-		GFF2211	0.65	-0.2
2,226,579	-		GFF2211	0.65	-0.3
2,226,579	-		GFF2211	0.65	-3.2
2,226,579	-		GFF2211	0.65	+0.3
2,226,579	-		GFF2211	0.65	-1.0
2,226,579	-		GFF2211	0.65	+1.0
2,226,586	+		GFF2211	0.66	-0.1
2,226,620	+		GFF2211	0.69	+0.4
2,226,620	+		GFF2211	0.69	-0.2
2,226,623	+		GFF2211	0.69	+0.8
2,226,623	+		GFF2211	0.69	+0.2
2,226,623	-		GFF2211	0.69	+1.3
2,226,631	-		GFF2211	0.70	-1.3
2,226,631	-		GFF2211	0.70	-0.8
2,226,631	-		GFF2211	0.70	-0.4
2,226,638	-		GFF2211	0.70	+0.2
2,226,638	-		GFF2211	0.70	-1.9
2,226,643	-		GFF2211	0.71	+1.0
2,226,663	-		GFF2211	0.73	-1.6
2,226,689	+		GFF2211	0.75	+0.5
2,226,694	+		GFF2211	0.75	-0.1
2,226,694	+		GFF2211	0.75	-0.2
2,226,694	+		GFF2211	0.75	+0.8
2,226,694	+		GFF2211	0.75	-0.2
2,226,702	-		GFF2211	0.76	-1.0
2,226,702	-		GFF2211	0.76	+0.2
2,226,702	-		GFF2211	0.76	-1.7
2,226,704	+		GFF2211	0.76	+0.8
2,226,704	+		GFF2211	0.76	-0.6
2,226,704	+		GFF2211	0.76	-0.3
2,226,704	+		GFF2211	0.76	+0.6
2,226,704	+		GFF2211	0.76	-0.6
2,226,704	+		GFF2211	0.76	+0.2
2,226,712	-		GFF2211	0.77	-0.0
2,226,712	-		GFF2211	0.77	+0.2
2,226,712	-		GFF2211	0.77	-1.7
2,226,712	-		GFF2211	0.77	+0.0
2,226,712	-		GFF2211	0.77	+0.7
2,226,712	-		GFF2211	0.77	+0.3
2,226,723	+		GFF2211	0.78	+0.8
2,226,727	-		GFF2211	0.78	-1.8
2,226,779	+		GFF2211	0.83	+1.1
2,226,798	+		GFF2211	0.85	-1.0
2,226,801	-		GFF2211	0.85	-2.3
2,226,802	+		GFF2211	0.85	+0.2
2,226,810	-		GFF2211	0.86	-1.1
2,226,810	-		GFF2211	0.86	-0.6
2,226,861	-				+0.6
2,226,876	-				-1.2
2,226,929	+				+0.5
2,226,929	+				-0.1
2,226,937	-				-0.3
2,226,967	+				-0.9
2,226,967	+				-2.8
2,226,968	-				-1.9
2,226,968	-				+0.5
2,226,992	+		GFF2212	0.12	-1.7
2,227,034	+		GFF2212	0.29	-1.2
2,227,042	-		GFF2212	0.33	-0.2
2,227,060	-		GFF2212	0.40	-0.6
2,227,063	-		GFF2212	0.41	-0.2
2,227,063	-		GFF2212	0.41	+0.9
2,227,100	-		GFF2212	0.57	-0.5
2,227,105	-		GFF2212	0.59	+1.6
2,227,113	+		GFF2212	0.62	+0.7
2,227,120	-		GFF2212	0.65	+0.8
2,227,121	-		GFF2212	0.65	-1.1
2,227,139	+		GFF2212	0.73	+0.3
2,227,139	-		GFF2212	0.73	-1.6
2,227,148	-		GFF2212	0.77	+0.3
2,227,153	-		GFF2212	0.79	-2.7
2,227,163	+		GFF2212	0.83	+0.1
2,227,164	-		GFF2212	0.83	-0.9
2,227,164	-		GFF2212	0.83	-1.7
2,227,171	-		GFF2212	0.86	-1.2
2,227,173	+		GFF2212	0.87	+1.5
2,227,179	+		GFF2212	0.90	-0.4
2,227,179	-		GFF2212	0.90	+0.2
2,227,187	-				+0.6
2,227,192	-				-0.5
2,227,223	+				-1.5
2,227,256	-				-0.4
2,227,302	+		GFF2213	0.19	-0.5
2,227,338	+		GFF2213	0.25	-0.1
2,227,346	-		GFF2213	0.27	-1.3
2,227,392	+		GFF2213	0.35	+0.6
2,227,400	-		GFF2213	0.37	+0.8
2,227,400	-		GFF2213	0.37	+1.4
2,227,433	-		GFF2213	0.43	-0.1
2,227,460	+		GFF2213	0.48	-0.7
2,227,485	-		GFF2213	0.53	-1.9
2,227,506	+		GFF2213	0.57	+0.0
2,227,506	+		GFF2213	0.57	+0.0
2,227,514	-		GFF2213	0.58	-0.5
2,227,514	-		GFF2213	0.58	+0.1
2,227,541	-		GFF2213	0.63	+0.1
2,227,569	+		GFF2213	0.69	-1.6
2,227,606	-		GFF2213	0.75	-0.1
2,227,617	+		GFF2213	0.78	-0.0
2,227,619	+		GFF2213	0.78	-0.3
2,227,629	+		GFF2213	0.80	+0.3
2,227,629	+		GFF2213	0.80	+0.4
2,227,654	+		GFF2213	0.84	-0.0
2,227,662	-		GFF2213	0.86	+0.3
2,227,679	+		GFF2213	0.89	-0.3
2,227,679	+		GFF2213	0.89	+0.0
2,227,687	-				-0.5
2,227,713	-				-1.0
2,227,721	+				+1.1
2,227,723	-				+1.4
2,227,723	-				-0.7
2,227,730	+				-1.3
2,227,730	+				+0.9
2,227,731	+				-1.0
2,227,731	-				-0.1
2,227,801	-				-0.5
2,227,828	+		GFF2214	0.12	-0.0
2,227,833	+		GFF2214	0.12	-0.2
2,227,878	+		GFF2214	0.18	-0.7
2,227,878	+		GFF2214	0.18	+0.4
2,227,904	-		GFF2214	0.21	+0.2
2,227,929	-		GFF2214	0.24	+0.1
2,227,929	-		GFF2214	0.24	-0.8
2,227,951	+		GFF2214	0.27	-0.0
2,227,954	-		GFF2214	0.27	-0.3
2,227,954	-		GFF2214	0.27	-0.1
2,227,954	-		GFF2214	0.27	-1.4
2,227,954	-		GFF2214	0.27	-0.1
2,227,983	+		GFF2214	0.31	-0.4
2,227,983	-		GFF2214	0.31	+0.8
2,227,991	-		GFF2214	0.32	-1.0
2,228,014	+		GFF2214	0.34	+0.4
2,228,022	-		GFF2214	0.35	-0.1
2,228,022	-		GFF2214	0.35	-0.4
2,228,029	+		GFF2214	0.36	-0.3
2,228,032	-		GFF2214	0.37	+0.5
2,228,079	-		GFF2214	0.42	+0.3
2,228,081	+		GFF2214	0.42	+0.1
2,228,083	+		GFF2214	0.43	-0.7
2,228,089	-		GFF2214	0.43	+0.3
2,228,091	+		GFF2214	0.44	-0.8
2,228,149	-		GFF2214	0.51	-0.3
2,228,149	-		GFF2214	0.51	-1.2
2,228,162	-		GFF2214	0.52	-1.7
2,228,186	+		GFF2214	0.55	+0.4
2,228,190	-		GFF2214	0.56	+0.5
2,228,192	-		GFF2214	0.56	-0.5
2,228,199	-		GFF2214	0.57	-0.6