Strain Fitness in Sphingobium sp. HT1-2 around GFF2155

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,182,656	+		GFF2152	0.85	+0.2
2,182,661	+		GFF2152	0.85	-0.3
2,182,680	-		GFF2152	0.87	-1.5
2,182,680	-		GFF2152	0.87	+0.0
2,182,680	-		GFF2152	0.87	+0.1
2,182,685	+		GFF2152	0.87	+0.5
2,182,702	+		GFF2152	0.88	-0.8
2,182,731	+				-0.6
2,182,731	+				-0.6
2,182,738	+				-0.9
2,182,738	+				-1.7
2,182,738	+				-0.1
2,182,738	+				+0.8
2,182,738	-				-0.2
2,182,741	+				-0.8
2,182,746	-				+0.3
2,182,818	+				+0.2
2,182,820	+				-0.7
2,182,820	+				+1.0
2,182,820	+				+0.8
2,182,820	-				+0.2
2,182,824	-				+0.1
2,182,824	-				-0.3
2,182,826	-				+1.2
2,182,829	-				-0.3
2,182,829	-				-0.1
2,182,831	+				+0.3
2,182,839	-				-1.4
2,182,839	-				-0.8
2,182,841	-				+0.2
2,182,851	+				+0.9
2,182,852	+				+0.4
2,182,887	+				-0.5
2,182,887	+				-1.1
2,182,896	+				+0.1
2,182,920	+				+1.0
2,182,920	+				+0.3
2,182,928	-				+0.6
2,182,928	-				-0.7
2,182,928	-				+0.4
2,182,928	-				-1.6
2,182,928	-				+0.4
2,182,928	-				-0.6
2,182,957	+				+0.3
2,182,963	-				+0.5
2,182,970	-				-0.1
2,182,970	-				-1.3
2,182,982	-				-0.2
2,182,988	+				-1.1
2,182,996	-				-1.3
2,182,998	+				-0.2
2,182,998	+				-0.3
2,183,006	-				+0.5
2,183,006	-				-1.2
2,183,006	-				+1.2
2,183,006	-				+0.7
2,183,011	-				-1.0
2,183,013	+				-1.3
2,183,022	-				-0.2
2,183,077	-		GFF2153	0.15	-0.1
2,183,092	-		GFF2153	0.18	+0.4
2,183,100	-		GFF2153	0.19	+0.1
2,183,102	+		GFF2153	0.20	+0.9
2,183,102	+		GFF2153	0.20	-0.1
2,183,105	-		GFF2153	0.20	-2.6
2,183,107	+		GFF2153	0.21	-0.5
2,183,110	-		GFF2153	0.21	-0.4
2,183,110	-		GFF2153	0.21	-0.5
2,183,110	-		GFF2153	0.21	+0.2
2,183,110	-		GFF2153	0.21	-0.7
2,183,110	-		GFF2153	0.21	-0.6
2,183,126	+		GFF2153	0.25	-0.9
2,183,130	+		GFF2153	0.26	-0.0
2,183,134	-		GFF2153	0.26	+0.1
2,183,138	-		GFF2153	0.27	+1.1
2,183,139	+		GFF2153	0.28	-0.6
2,183,145	-		GFF2153	0.29	+1.1
2,183,147	-		GFF2153	0.29	+0.7
2,183,168	+		GFF2153	0.34	-1.8
2,183,176	+		GFF2153	0.35	+1.1
2,183,181	+		GFF2153	0.36	-0.8
2,183,181	+		GFF2153	0.36	+0.4
2,183,181	+		GFF2153	0.36	-2.0
2,183,181	+		GFF2153	0.36	+0.8
2,183,181	+		GFF2153	0.36	+1.4
2,183,184	-		GFF2153	0.37	+0.2
2,183,184	-		GFF2153	0.37	+0.1
2,183,189	-		GFF2153	0.38	-1.2
2,183,189	-		GFF2153	0.38	-0.1
2,183,189	-		GFF2153	0.38	-0.6
2,183,189	-		GFF2153	0.38	-0.8
2,183,192	+		GFF2153	0.39	-0.1
2,183,211	+		GFF2153	0.42	-0.3
2,183,220	+		GFF2153	0.44	-0.5
2,183,221	+		GFF2153	0.45	-1.4
2,183,221	+		GFF2153	0.45	-1.9
2,183,221	+		GFF2153	0.45	-1.4
2,183,228	-		GFF2153	0.46	+0.8
2,183,228	-		GFF2153	0.46	-2.3
2,183,228	-		GFF2153	0.46	-1.8
2,183,229	-		GFF2153	0.46	-0.6
2,183,229	-		GFF2153	0.46	+0.2
2,183,229	-		GFF2153	0.46	-2.4
2,183,229	-		GFF2153	0.46	-1.0
2,183,229	-		GFF2153	0.46	+0.0
2,183,245	-		GFF2153	0.50	+0.8
2,183,255	-		GFF2153	0.52	-0.0
2,183,281	+		GFF2153	0.57	-0.8
2,183,283	-		GFF2153	0.57	-0.9
2,183,286	+		GFF2153	0.58	-0.6
2,183,286	+		GFF2153	0.58	-1.4
2,183,294	-		GFF2153	0.60	-0.1
2,183,312	-		GFF2153	0.64	+0.8
2,183,333	+		GFF2153	0.68	-2.8
2,183,341	+		GFF2153	0.70	+0.5
2,183,341	-		GFF2153	0.70	-0.8
2,183,357	+		GFF2153	0.73	-0.6
2,183,357	+		GFF2153	0.73	-1.5
2,183,357	+		GFF2153	0.73	+1.7
2,183,365	-		GFF2153	0.75	-2.2
2,183,365	-		GFF2153	0.75	+0.8
2,183,367	+		GFF2153	0.75	-1.6
2,183,380	-		GFF2153	0.78	-2.2
2,183,381	+		GFF2153	0.78	-1.6
2,183,381	+		GFF2153	0.78	-1.3
2,183,384	+		GFF2153	0.79	+0.4
2,183,386	+		GFF2153	0.79	+0.8
2,183,386	+		GFF2153	0.79	-1.7
2,183,386	+		GFF2153	0.79	-0.5
2,183,386	+		GFF2153	0.79	-0.5
2,183,386	+		GFF2153	0.79	-1.2
2,183,386	+		GFF2153	0.79	-0.1
2,183,389	-		GFF2153	0.80	+0.3
2,183,391	+		GFF2153	0.80	-0.0
2,183,391	+		GFF2153	0.80	+0.0
2,183,391	+		GFF2153	0.80	-0.2
2,183,394	-		GFF2153	0.81	-2.9
2,183,399	-		GFF2153	0.82	-0.7
2,183,399	-		GFF2153	0.82	+0.2
2,183,399	-		GFF2153	0.82	-0.6
2,183,399	-		GFF2153	0.82	-0.2
2,183,419	+		GFF2153	0.86	+1.0
2,183,419	+		GFF2153	0.86	-1.0
2,183,419	+		GFF2153	0.86	+0.8
2,183,422	-		GFF2153	0.86	-1.8
2,183,427	-		GFF2153	0.88	+0.6
2,183,427	-		GFF2153	0.88	-2.8
2,183,427	-		GFF2153	0.88	-0.3
2,183,447	+				+0.8
2,183,450	+				+0.7
2,183,452	+				-0.7
2,183,454	+				+0.6
2,183,460	-				+0.8
2,183,460	-				-0.2
2,183,460	-				-0.1
2,183,460	-				-0.4
2,183,460	-				+0.2
2,183,460	-				+0.1
2,183,467	+				+0.3
2,183,481	+				-0.8
2,183,481	+				-0.5
2,183,481	+				-0.3
2,183,481	+				+0.9
2,183,494	-				+0.8
2,183,494	-				-1.7
2,183,523	+		GFF2154	0.23	-0.1
2,183,531	-		GFF2154	0.28	+0.2
2,183,531	-		GFF2154	0.28	+0.1
2,183,540	+		GFF2154	0.33	-2.3
2,183,543	-		GFF2154	0.34	-0.0
2,183,543	-		GFF2154	0.34	-0.0
2,183,543	-		GFF2154	0.34	-0.7
2,183,545	+		GFF2154	0.36	+0.3
2,183,545	+		GFF2154	0.36	-0.5
2,183,545	+		GFF2154	0.36	-0.3
2,183,548	-		GFF2154	0.37	+0.5
2,183,550	+		GFF2154	0.39	+0.7
2,183,550	+		GFF2154	0.39	+1.4
2,183,550	+		GFF2154	0.39	-1.9
2,183,558	-		GFF2154	0.43	-0.9
2,183,558	-		GFF2154	0.43	-0.9
2,183,564	-		GFF2154	0.47	+0.3
2,183,573	+		GFF2154	0.52	-0.4
2,183,581	-		GFF2154	0.56	-1.2
2,183,582	+		GFF2154	0.57	-1.6
2,183,605	+		GFF2154	0.70	+0.3
2,183,613	-		GFF2154	0.75	-0.2
2,183,632	-		GFF2154	0.86	+1.1
2,183,652	+				-0.0
2,183,652	+				-0.1
2,183,652	+				-1.5
2,183,656	+				-0.8
2,183,660	-				+0.4
2,183,660	-				+0.2
2,183,692	+		GFF2155	0.13	+1.5
2,183,706	-		GFF2155	0.17	-0.3
2,183,720	-		GFF2155	0.22	-0.3
2,183,721	-		GFF2155	0.22	-1.9
2,183,732	+		GFF2155	0.26	+0.6
2,183,738	+		GFF2155	0.28	-1.7
2,183,740	-		GFF2155	0.28	-0.1
2,183,740	-		GFF2155	0.28	-1.3
2,183,746	-		GFF2155	0.30	-1.0
2,183,746	-		GFF2155	0.30	+0.5
2,183,746	-		GFF2155	0.30	-0.4
2,183,763	+		GFF2155	0.36	-0.6
2,183,763	+		GFF2155	0.36	+0.0
2,183,771	-		GFF2155	0.39	-0.1
2,183,771	-		GFF2155	0.39	-2.2
2,183,771	-		GFF2155	0.39	-0.8
2,183,771	-		GFF2155	0.39	-1.1
2,183,813	-		GFF2155	0.52	+1.1
2,183,833	+		GFF2155	0.59	-1.5
2,183,855	+		GFF2155	0.66	+0.3
2,183,855	+		GFF2155	0.66	-1.5
2,183,855	+		GFF2155	0.66	-1.2
2,183,855	+		GFF2155	0.66	-0.1
2,183,855	+		GFF2155	0.66	+0.2
2,183,855	+		GFF2155	0.66	-0.1
2,183,855	+		GFF2155	0.66	+0.4
2,183,855	+		GFF2155	0.66	+0.3
2,183,855	+		GFF2155	0.66	-0.7
2,183,855	+		GFF2155	0.66	-2.2
2,183,858	-		GFF2155	0.67	-0.8
2,183,863	-		GFF2155	0.69	-0.2
2,183,863	-		GFF2155	0.69	-1.8
2,183,863	-		GFF2155	0.69	-1.4
2,183,863	-		GFF2155	0.69	+0.6
2,183,863	-		GFF2155	0.69	+0.9
2,183,863	-		GFF2155	0.69	-1.0
2,183,863	-		GFF2155	0.69	-0.1
2,183,863	-		GFF2155	0.69	-2.4
2,183,863	-		GFF2155	0.69	+0.4
2,183,863	-		GFF2155	0.69	-0.3
2,183,863	-		GFF2155	0.69	-0.5
2,183,863	-		GFF2155	0.69	-1.2
2,183,863	-		GFF2155	0.69	-0.6
2,183,874	+		GFF2155	0.72	-3.5
2,183,890	-		GFF2155	0.77	-1.0
2,183,890	-		GFF2155	0.77	+1.4
2,183,906	+		GFF2155	0.83	-2.3
2,183,910	+		GFF2155	0.84	+0.1
2,183,910	+		GFF2155	0.84	+1.2
2,183,910	+		GFF2155	0.84	-1.3
2,183,914	-		GFF2155	0.85	+0.4
2,183,916	+		GFF2155	0.86	-0.8
2,183,916	+		GFF2155	0.86	+0.5
2,183,916	+		GFF2155	0.86	-2.3
2,183,916	+		GFF2155	0.86	-0.1
2,183,916	+		GFF2155	0.86	+0.3
2,183,916	+		GFF2155	0.86	-1.5
2,183,916	+		GFF2155	0.86	-2.6
2,183,916	+		GFF2155	0.86	-1.4
2,183,918	-		GFF2155	0.87	-0.1
2,183,923	-		GFF2155	0.88	+0.9
2,183,923	-		GFF2155	0.88	-0.5
2,183,924	-		GFF2155	0.89	+0.7
2,183,924	-		GFF2155	0.89	+0.5
2,183,924	-		GFF2155	0.89	-0.5
2,183,924	-		GFF2155	0.89	-0.2
2,183,930	-				-0.5
2,183,931	-				-1.1
2,183,948	+				-1.3
2,183,968	+				+0.2
2,183,971	+				-0.9
2,183,976	+				-0.6
2,183,982	+				-1.4
2,183,999	-		GFF2156	0.11	-1.6
2,184,091	+		GFF2156	0.34	+1.3
2,184,091	+		GFF2156	0.34	-0.8
2,184,096	+		GFF2156	0.35	-1.3
2,184,103	-		GFF2156	0.37	-0.8
2,184,109	-		GFF2156	0.39	-1.6
2,184,127	-		GFF2156	0.43	-1.0
2,184,127	-		GFF2156	0.43	-0.0
2,184,135	-		GFF2156	0.45	+0.6
2,184,137	+		GFF2156	0.46	-1.5
2,184,163	+		GFF2156	0.52	-1.2
2,184,163	+		GFF2156	0.52	-1.5
2,184,163	+		GFF2156	0.52	+0.0
2,184,163	+		GFF2156	0.52	+0.1
2,184,163	+		GFF2156	0.52	-1.1
2,184,167	+		GFF2156	0.53	-0.1
2,184,171	-		GFF2156	0.54	+0.8
2,184,171	-		GFF2156	0.54	+0.1
2,184,171	-		GFF2156	0.54	-1.2
2,184,171	-		GFF2156	0.54	-2.1
2,184,171	-		GFF2156	0.54	-0.5
2,184,194	+		GFF2156	0.60	+0.9
2,184,219	+		GFF2156	0.66	-1.2
2,184,227	-		GFF2156	0.68	-1.6
2,184,265	+		GFF2156	0.78	+0.7
2,184,267	+		GFF2156	0.78	+0.1
2,184,274	+		GFF2156	0.80	-1.1
2,184,274	+		GFF2156	0.80	-1.8
2,184,282	-		GFF2156	0.82	+1.0
2,184,294	-		GFF2156	0.85	+0.5
2,184,314	+				-0.7
2,184,314	+				-0.4
2,184,333	+				-1.5
2,184,341	+				+0.4
2,184,341	+				+0.9
2,184,341	+				+0.3
2,184,341	+				+0.7
2,184,343	-				-0.1
2,184,349	-				+0.1
2,184,349	-				-0.2
2,184,363	-				-0.1
2,184,371	+		GFF2157	0.11	+0.8
2,184,376	+		GFF2157	0.13	-0.3
2,184,376	+		GFF2157	0.13	+1.0
2,184,376	+		GFF2157	0.13	+0.7
2,184,379	+		GFF2157	0.14	+0.1
2,184,384	+		GFF2157	0.16	-0.3
2,184,384	-		GFF2157	0.16	-1.5
2,184,395	+		GFF2157	0.21	+0.3
2,184,398	-		GFF2157	0.22	-0.9
2,184,403	-		GFF2157	0.24	-1.4
2,184,421	-		GFF2157	0.31	+0.1
2,184,422	-		GFF2157	0.31	-1.2
2,184,424	+		GFF2157	0.32	+0.4
2,184,457	+		GFF2157	0.45	-1.3
2,184,470	-		GFF2157	0.50	-1.3
2,184,495	+		GFF2157	0.60	+0.2
2,184,495	+		GFF2157	0.60	-1.0
2,184,508	+		GFF2157	0.65	-1.1
2,184,512	-		GFF2157	0.67	+0.0
2,184,522	+		GFF2157	0.71	-1.6
2,184,522	+		GFF2157	0.71	-0.6
2,184,523	+		GFF2157	0.71	+0.4
2,184,530	-		GFF2157	0.74	-0.6
2,184,536	+		GFF2157	0.77	+0.7
2,184,542	+		GFF2157	0.79	-1.5
2,184,554	-		GFF2157	0.84	+1.7
2,184,574	+				-1.9
2,184,574	+				+0.2
2,184,574	+				+0.3
2,184,582	-				+0.8
2,184,583	-				+0.7
2,184,611	-				-1.6
2,184,612	-				-1.0
2,184,612	-				-0.1
2,184,612	-				-0.0
2,184,612	-				-0.7
2,184,624	+		GFF2158	0.11	+0.9
2,184,655	-		GFF2158	0.22	+0.2
2,184,666	+		GFF2158	0.25	-0.5
2,184,673	+		GFF2158	0.28	+0.2
2,184,673	+		GFF2158	0.28	-1.3
2,184,673	+		GFF2158	0.28	+0.7
2,184,673	+		GFF2158	0.28	-0.7
2,184,673	+		GFF2158	0.28	-0.9
2,184,673	+		GFF2158	0.28	+0.6
2,184,673	+		GFF2158	0.28	+0.8
2,184,673	+		GFF2158	0.28	+0.4
2,184,673	+		GFF2158	0.28	-1.8
2,184,681	-		GFF2158	0.30	+1.3
2,184,681	-		GFF2158	0.30	-0.2
2,184,681	-		GFF2158	0.30	-0.0
2,184,681	-		GFF2158	0.30	+0.1
2,184,681	-		GFF2158	0.30	+1.3
2,184,681	-		GFF2158	0.30	+1.0
2,184,681	-		GFF2158	0.30	-0.9
2,184,681	-		GFF2158	0.30	-2.9
2,184,681	-		GFF2158	0.30	-0.6
2,184,681	-		GFF2158	0.30	-0.8
2,184,681	-		GFF2158	0.30	-0.2
2,184,692	+		GFF2158	0.34	-0.5
2,184,694	-		GFF2158	0.35	-0.8
2,184,706	+		GFF2158	0.39	-2.2
2,184,731	-		GFF2158	0.47	+1.1
2,184,737	+		GFF2158	0.49	-0.3
2,184,737	+		GFF2158	0.49	-1.4
2,184,745	-		GFF2158	0.52	-0.1
2,184,745	-		GFF2158	0.52	-0.7
2,184,745	-		GFF2158	0.52	+0.3
2,184,747	+		GFF2158	0.53	-0.3
2,184,783	+		GFF2158	0.65	-0.8
2,184,796	-		GFF2158	0.69	+1.3
2,184,830	+		GFF2158	0.80	+0.8
2,184,830	+		GFF2158	0.80	-0.4
2,184,838	-		GFF2158	0.83	-0.4
2,184,843	-		GFF2158	0.85	+0.5
2,184,858	+				+1.3
2,184,866	-				-1.3
2,184,878	+				-1.5
2,184,878	+				-1.2
2,184,883	+				-0.0
2,184,883	+				-0.2
2,184,884	-				+1.0
2,184,885	-				+0.7
2,184,891	-				+0.8
2,184,891	-				+0.3
2,184,904	-				+0.1
2,184,936	-		GFF2159	0.10	-0.0
2,184,946	-		GFF2159	0.12	-0.9
2,184,953	+		GFF2159	0.13	-0.3
2,184,955	+		GFF2159	0.14	-0.5