Strain Fitness in Sphingobium sp. HT1-2 around GFF2146

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,175,130	-		GFF2143	0.77	-0.1
2,175,145	-		GFF2143	0.78	-1.1
2,175,145	-		GFF2143	0.78	-0.3
2,175,147	-		GFF2143	0.78	+0.5
2,175,174	+		GFF2143	0.81	-0.6
2,175,183	+		GFF2143	0.81	+0.1
2,175,185	+		GFF2143	0.82	-1.9
2,175,191	-		GFF2143	0.82	-0.4
2,175,204	+		GFF2143	0.83	-0.2
2,175,204	+		GFF2143	0.83	-0.4
2,175,220	-		GFF2143	0.85	+1.1
2,175,256	+		GFF2143	0.88	-1.9
2,175,281	+				-0.6
2,175,289	-				+0.5
2,175,299	-				+0.1
2,175,331	-				-3.7
2,175,404	-				-0.3
2,175,404	-				-0.3
2,175,429	+				-0.0
2,175,429	+				-0.9
2,175,429	+				-0.4
2,175,429	+				-1.1
2,175,434	+				-2.5
2,175,437	-		GFF2144	0.10	+0.2
2,175,437	-		GFF2144	0.10	-0.5
2,175,437	-		GFF2144	0.10	-1.4
2,175,437	-		GFF2144	0.10	+1.1
2,175,437	-		GFF2144	0.10	+0.2
2,175,461	-		GFF2144	0.29	-0.6
2,175,461	-		GFF2144	0.29	+1.0
2,175,522	+		GFF2144	0.78	+0.7
2,175,522	+		GFF2144	0.78	-0.5
2,175,566	+				+0.8
2,175,583	+				+0.9
2,175,597	-				+0.7
2,175,609	-		GFF2145	0.10	+0.6
2,175,619	-		GFF2145	0.12	-0.7
2,175,628	+		GFF2145	0.14	-0.2
2,175,629	-		GFF2145	0.14	-0.3
2,175,629	-		GFF2145	0.14	+1.1
2,175,633	+		GFF2145	0.15	-0.2
2,175,669	+		GFF2145	0.23	-0.0
2,175,677	-		GFF2145	0.24	-0.1
2,175,677	-		GFF2145	0.24	+0.6
2,175,774	-		GFF2145	0.45	-0.0
2,175,793	-		GFF2145	0.49	-1.2
2,175,809	-		GFF2145	0.52	-0.5
2,175,835	-		GFF2145	0.58	+0.1
2,175,858	-		GFF2145	0.63	+0.3
2,175,877	+		GFF2145	0.67	+0.7
2,175,885	-		GFF2145	0.69	-0.9
2,175,885	-		GFF2145	0.69	+0.7
2,175,953	+		GFF2145	0.83	-0.3
2,175,961	-		GFF2145	0.85	-1.4
2,175,970	+		GFF2145	0.87	-0.1
2,175,978	-		GFF2145	0.88	-0.6
2,176,062	+				-1.0
2,176,085	+				-0.2
2,176,098	+				-0.5
2,176,117	+				+3.1
2,176,131	+				+0.5
2,176,131	+				-0.4
2,176,154	-				+0.1
2,176,161	-				-1.1
2,176,161	-				+0.8
2,176,170	+				-0.8
2,176,178	-				+1.2
2,176,189	+				+1.0
2,176,233	-		GFF2146	0.12	+0.4
2,176,329	+		GFF2146	0.19	-0.5
2,176,329	+		GFF2146	0.19	+0.7
2,176,329	+		GFF2146	0.19	-0.3
2,176,333	-		GFF2146	0.19	-0.6
2,176,335	+		GFF2146	0.20	-1.2
2,176,335	+		GFF2146	0.20	-0.4
2,176,335	+		GFF2146	0.20	-1.3
2,176,335	+		GFF2146	0.20	+0.2
2,176,337	-		GFF2146	0.20	+1.0
2,176,337	-		GFF2146	0.20	-0.8
2,176,343	-		GFF2146	0.20	-0.9
2,176,343	-		GFF2146	0.20	-0.2
2,176,348	-		GFF2146	0.21	+0.1
2,176,358	+		GFF2146	0.21	-1.2
2,176,382	+		GFF2146	0.23	+0.6
2,176,424	+		GFF2146	0.26	+0.9
2,176,424	+		GFF2146	0.26	+0.3
2,176,424	+		GFF2146	0.26	-1.9
2,176,424	+		GFF2146	0.26	+1.4
2,176,424	+		GFF2146	0.26	-1.4
2,176,424	+		GFF2146	0.26	+0.2
2,176,429	+		GFF2146	0.27	-0.7
2,176,432	-		GFF2146	0.27	+0.5
2,176,432	-		GFF2146	0.27	+0.8
2,176,456	+		GFF2146	0.29	-1.6
2,176,464	-		GFF2146	0.30	-0.3
2,176,474	-		GFF2146	0.30	-1.2
2,176,494	+		GFF2146	0.32	+1.1
2,176,502	-		GFF2146	0.32	-1.2
2,176,507	-		GFF2146	0.33	+0.8
2,176,508	-		GFF2146	0.33	+0.9
2,176,566	+		GFF2146	0.37	-0.6
2,176,576	-		GFF2146	0.38	-2.9
2,176,576	-		GFF2146	0.38	-0.4
2,176,579	-		GFF2146	0.38	+2.2
2,176,588	+		GFF2146	0.39	+0.8
2,176,631	+		GFF2146	0.42	+1.4
2,176,631	+		GFF2146	0.42	+0.4
2,176,631	+		GFF2146	0.42	+0.0
2,176,639	-		GFF2146	0.43	-1.3
2,176,639	-		GFF2146	0.43	-0.6
2,176,639	-		GFF2146	0.43	+0.1
2,176,639	-		GFF2146	0.43	+0.1
2,176,639	-		GFF2146	0.43	+0.0
2,176,639	-		GFF2146	0.43	+0.7
2,176,639	-		GFF2146	0.43	-0.3
2,176,639	-		GFF2146	0.43	+0.4
2,176,639	-		GFF2146	0.43	+0.8
2,176,639	-		GFF2146	0.43	-1.3
2,176,639	-		GFF2146	0.43	-0.5
2,176,741	+		GFF2146	0.51	-0.7
2,176,762	-		GFF2146	0.53	-1.3
2,176,762	-		GFF2146	0.53	-0.0
2,176,774	+		GFF2146	0.53	+0.9
2,176,799	+		GFF2146	0.55	+0.5
2,176,817	+		GFF2146	0.57	+0.6
2,176,822	+		GFF2146	0.57	-2.0
2,176,825	-		GFF2146	0.57	-0.1
2,176,862	+		GFF2146	0.60	+0.4
2,176,862	+		GFF2146	0.60	-0.9
2,176,868	+		GFF2146	0.61	+0.2
2,176,868	+		GFF2146	0.61	-1.9
2,176,868	+		GFF2146	0.61	+1.2
2,176,876	-		GFF2146	0.61	+0.9
2,176,884	+		GFF2146	0.62	-0.3
2,176,955	-		GFF2146	0.67	+0.2
2,176,974	+		GFF2146	0.69	+0.4
2,176,974	+		GFF2146	0.69	-0.1
2,176,980	-		GFF2146	0.69	+0.8
2,176,982	-		GFF2146	0.70	-1.9
2,176,984	-		GFF2146	0.70	+0.6
2,177,157	+		GFF2146	0.83	-2.6
2,177,168	+		GFF2146	0.84	+0.1
2,177,180	-		GFF2146	0.85	-1.5
2,177,207	+		GFF2146	0.87	-0.3
2,177,245	-		GFF2146	0.90	-0.6
2,177,254	+				+1.1
2,177,279	+				+0.1
2,177,279	+				+0.6
2,177,299	-				-1.3
2,177,318	+				+0.2
2,177,318	+				+0.9
2,177,326	-				+0.7
2,177,336	-				+0.3
2,177,355	+				-1.4
2,177,417	+				-0.8
2,177,417	+				+0.3
2,177,417	+				+1.7
2,177,425	-				-0.6
2,177,452	+				+0.1
2,177,458	-				+0.7
2,177,462	+				+1.6
2,177,462	+				-0.2
2,177,470	-				+0.4
2,177,477	-				+0.1
2,177,512	-				-0.4
2,177,533	+				+0.1
2,177,533	+				+0.2
2,177,533	+				+1.3
2,177,537	-				-2.5
2,177,541	-				+2.1
2,177,541	-				+0.5
2,177,541	-				+0.3
2,177,541	-				-0.2
2,177,541	-				-0.7
2,177,541	-				-0.4
2,177,541	-				+0.1
2,177,541	-				-1.8
2,177,551	-				-0.2
2,177,596	+		GFF2147	0.12	+0.1
2,177,687	+		GFF2147	0.21	+1.0
2,177,718	-		GFF2147	0.23	+0.6
2,177,725	+		GFF2147	0.24	-0.5
2,177,725	+		GFF2147	0.24	+0.5
2,177,725	+		GFF2147	0.24	-0.1
2,177,725	+		GFF2147	0.24	-1.5
2,177,733	-		GFF2147	0.25	-1.7
2,177,733	-		GFF2147	0.25	+0.2
2,177,733	-		GFF2147	0.25	-1.6
2,177,733	-		GFF2147	0.25	+0.6
2,177,733	-		GFF2147	0.25	-1.7
2,177,733	-		GFF2147	0.25	-1.5
2,177,733	-		GFF2147	0.25	-1.3
2,177,790	+		GFF2147	0.30	+0.6
2,177,790	+		GFF2147	0.30	+1.2
2,177,790	+		GFF2147	0.30	+0.9
2,177,803	+		GFF2147	0.32	-1.2
2,177,811	-		GFF2147	0.32	-1.1
2,177,827	-		GFF2147	0.34	+0.5
2,177,827	-		GFF2147	0.34	+0.3
2,177,827	-		GFF2147	0.34	+0.8
2,177,897	+		GFF2147	0.40	-2.4
2,177,905	-		GFF2147	0.41	-0.6
2,177,910	-		GFF2147	0.42	-0.9
2,177,912	+		GFF2147	0.42	+0.2
2,177,920	-		GFF2147	0.43	-0.3
2,177,920	-		GFF2147	0.43	+1.1
2,177,935	-		GFF2147	0.44	-0.0
2,177,949	+		GFF2147	0.45	+0.2
2,177,955	-		GFF2147	0.46	-0.7
2,178,011	+		GFF2147	0.51	-2.5
2,178,020	+		GFF2147	0.52	+0.5
2,178,028	+		GFF2147	0.53	-1.2
2,178,052	-		GFF2147	0.55	-1.9
2,178,066	-		GFF2147	0.57	-0.3
2,178,075	-		GFF2147	0.57	-0.7
2,178,101	+		GFF2147	0.60	+0.2
2,178,184	+		GFF2147	0.68	-0.7
2,178,212	-		GFF2147	0.70	-0.6
2,178,219	+		GFF2147	0.71	+0.6
2,178,227	-		GFF2147	0.72	+0.1
2,178,227	-		GFF2147	0.72	-0.4
2,178,262	+		GFF2147	0.75	-0.1
2,178,270	-		GFF2147	0.76	+0.3
2,178,270	-		GFF2147	0.76	+0.5
2,178,340	-		GFF2147	0.83	-0.5