Strain Fitness in Sphingobium sp. HT1-2 around GFF2143

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,173,244	+		GFF2140	0.15	+1.1
2,173,244	+		GFF2140	0.15	-0.5
2,173,254	+		GFF2140	0.17	+0.7
2,173,259	+		GFF2140	0.17	-1.0
2,173,259	+		GFF2140	0.17	-2.3
2,173,259	+		GFF2140	0.17	+0.1
2,173,259	+		GFF2140	0.17	-0.9
2,173,259	+		GFF2140	0.17	+0.4
2,173,259	+		GFF2140	0.17	+0.3
2,173,259	+		GFF2140	0.17	-0.1
2,173,259	+		GFF2140	0.17	-0.1
2,173,259	+		GFF2140	0.17	-0.8
2,173,259	+		GFF2140	0.17	-0.3
2,173,259	+		GFF2140	0.17	+0.4
2,173,259	+		GFF2140	0.17	-0.5
2,173,259	+		GFF2140	0.17	-1.6
2,173,259	+		GFF2140	0.17	-2.3
2,173,259	+		GFF2140	0.17	+0.2
2,173,259	+		GFF2140	0.17	+0.9
2,173,259	+		GFF2140	0.17	-0.3
2,173,259	+		GFF2140	0.17	+0.8
2,173,259	+		GFF2140	0.17	+0.3
2,173,259	+		GFF2140	0.17	+0.1
2,173,259	+		GFF2140	0.17	-0.8
2,173,259	+		GFF2140	0.17	-0.3
2,173,259	+		GFF2140	0.17	+0.8
2,173,259	+		GFF2140	0.17	-0.2
2,173,259	+		GFF2140	0.17	+1.0
2,173,259	+		GFF2140	0.17	-0.0
2,173,259	+		GFF2140	0.17	+0.4
2,173,260	+		GFF2140	0.17	-0.9
2,173,267	-		GFF2140	0.18	-0.1
2,173,267	-		GFF2140	0.18	-1.0
2,173,267	-		GFF2140	0.18	-1.5
2,173,267	-		GFF2140	0.18	-0.8
2,173,267	-		GFF2140	0.18	-0.2
2,173,267	-		GFF2140	0.18	+1.2
2,173,267	-		GFF2140	0.18	+1.1
2,173,267	-		GFF2140	0.18	-1.0
2,173,267	-		GFF2140	0.18	+0.3
2,173,267	-		GFF2140	0.18	+1.0
2,173,267	-		GFF2140	0.18	-1.1
2,173,267	-		GFF2140	0.18	-2.6
2,173,267	-		GFF2140	0.18	-0.3
2,173,267	-		GFF2140	0.18	-0.2
2,173,267	-		GFF2140	0.18	-0.6
2,173,267	-		GFF2140	0.18	+0.5
2,173,267	-		GFF2140	0.18	-3.0
2,173,267	-		GFF2140	0.18	+0.3
2,173,267	-		GFF2140	0.18	-1.3
2,173,267	-		GFF2140	0.18	+1.6
2,173,267	-		GFF2140	0.18	+0.7
2,173,267	-		GFF2140	0.18	+0.4
2,173,267	-		GFF2140	0.18	-1.2
2,173,267	-		GFF2140	0.18	-0.7
2,173,267	-		GFF2140	0.18	-0.5
2,173,272	+		GFF2140	0.19	+0.0
2,173,280	+		GFF2140	0.20	+0.3
2,173,280	+		GFF2140	0.20	+0.3
2,173,280	+		GFF2140	0.20	-1.2
2,173,280	+		GFF2140	0.20	+0.4
2,173,280	+		GFF2140	0.20	-1.4
2,173,280	+		GFF2140	0.20	+0.0
2,173,280	+		GFF2140	0.20	-1.1
2,173,280	-		GFF2140	0.20	+0.7
2,173,280	-		GFF2140	0.20	-1.2
2,173,288	-		GFF2140	0.21	-1.5
2,173,288	-		GFF2140	0.21	-0.9
2,173,288	-		GFF2140	0.21	-0.3
2,173,288	-		GFF2140	0.21	-0.1
2,173,288	-		GFF2140	0.21	-0.9
2,173,288	-		GFF2140	0.21	+0.2
2,173,288	-		GFF2140	0.21	+0.1
2,173,288	-		GFF2140	0.21	+0.8
2,173,288	-		GFF2140	0.21	-1.2
2,173,288	-		GFF2140	0.21	+0.2
2,173,293	-		GFF2140	0.22	+0.6
2,173,293	-		GFF2140	0.22	+0.0
2,173,293	-		GFF2140	0.22	-0.3
2,173,294	-		GFF2140	0.22	+1.1
2,173,332	-		GFF2140	0.27	+0.9
2,173,337	+		GFF2140	0.28	+0.4
2,173,396	-		GFF2140	0.36	-0.9
2,173,398	-		GFF2140	0.36	-1.3
2,173,398	-		GFF2140	0.36	-2.8
2,173,398	-		GFF2140	0.36	-0.7
2,173,416	-		GFF2140	0.39	+0.1
2,173,420	+		GFF2140	0.39	+0.4
2,173,420	+		GFF2140	0.39	+0.5
2,173,420	+		GFF2140	0.39	-0.0
2,173,441	-		GFF2140	0.42	+1.8
2,173,493	+		GFF2140	0.49	+0.7
2,173,493	-		GFF2140	0.49	+0.5
2,173,497	-		GFF2140	0.50	-0.9
2,173,500	+		GFF2140	0.50	-0.8
2,173,500	+		GFF2140	0.50	-0.8
2,173,508	-		GFF2140	0.51	+1.1
2,173,508	-		GFF2140	0.51	-1.3
2,173,518	-		GFF2140	0.53	+1.1
2,173,536	+		GFF2140	0.55	-1.7
2,173,544	-		GFF2140	0.56	+0.1
2,173,554	+		GFF2140	0.58	-1.0
2,173,559	+		GFF2140	0.58	+0.5
2,173,559	+		GFF2140	0.58	-0.2
2,173,565	+		GFF2140	0.59	-2.2
2,173,567	-		GFF2140	0.59	-2.1
2,173,567	-		GFF2140	0.59	+0.0
2,173,567	-		GFF2140	0.59	+0.9
2,173,567	-		GFF2140	0.59	+1.2
2,173,567	-		GFF2140	0.59	-1.6
2,173,567	-		GFF2140	0.59	-0.4
2,173,567	-		GFF2140	0.59	-1.8
2,173,567	-		GFF2140	0.59	+0.2
2,173,567	-		GFF2140	0.59	-0.4
2,173,581	+		GFF2140	0.61	-0.3
2,173,585	+		GFF2140	0.62	+0.2
2,173,589	-		GFF2140	0.62	-0.8
2,173,589	-		GFF2140	0.62	-0.6
2,173,606	-		GFF2140	0.65	+1.3
2,173,620	+		GFF2140	0.67	+0.8
2,173,622	-		GFF2140	0.67	-0.3
2,173,628	-		GFF2140	0.68	-0.4
2,173,641	+		GFF2140	0.69	-1.3
2,173,646	+		GFF2140	0.70	+0.4
2,173,649	-		GFF2140	0.70	+0.8
2,173,649	-		GFF2140	0.70	-1.5
2,173,649	-		GFF2140	0.70	+1.0
2,173,649	-		GFF2140	0.70	-0.3
2,173,654	-		GFF2140	0.71	-1.8
2,173,654	-		GFF2140	0.71	-0.4
2,173,656	+		GFF2140	0.71	-1.3
2,173,661	+		GFF2140	0.72	+0.8
2,173,671	+		GFF2140	0.73	+0.1
2,173,679	+		GFF2140	0.75	-2.8
2,173,679	-		GFF2140	0.75	+0.2
2,173,679	-		GFF2140	0.75	-1.4
2,173,679	-		GFF2140	0.75	+0.4
2,173,679	-		GFF2140	0.75	-0.0
2,173,695	-		GFF2140	0.77	-1.3
2,173,706	-		GFF2140	0.78	-0.8
2,173,708	+		GFF2140	0.79	+0.2
2,173,710	+		GFF2140	0.79	-1.6
2,173,710	+		GFF2140	0.79	+1.0
2,173,716	+		GFF2140	0.80	-0.6
2,173,716	+		GFF2140	0.80	-1.4
2,173,716	+		GFF2140	0.80	-0.1
2,173,718	-		GFF2140	0.80	+0.8
2,173,721	+		GFF2140	0.80	+0.2
2,173,724	-		GFF2140	0.81	-0.6
2,173,724	-		GFF2140	0.81	-1.2
2,173,729	-		GFF2140	0.81	+0.6
2,173,737	+		GFF2140	0.83	+0.1
2,173,745	-		GFF2140	0.84	-1.1
2,173,745	-		GFF2140	0.84	+0.8
2,173,745	-		GFF2140	0.84	-1.1
2,173,748	+		GFF2140	0.84	+0.6
2,173,753	+		GFF2140	0.85	-0.7
2,173,761	-		GFF2140	0.86	+0.4
2,173,761	-		GFF2140	0.86	+0.8
2,173,762	+		GFF2140	0.86	-0.2
2,173,762	+		GFF2140	0.86	-0.2
2,173,762	+		GFF2140	0.86	+0.4
2,173,762	+		GFF2140	0.86	+0.4
2,173,762	+		GFF2140	0.86	-2.2
2,173,762	+		GFF2140	0.86	+0.7
2,173,765	-		GFF2140	0.86	-2.5
2,173,767	+		GFF2140	0.87	-1.3
2,173,770	-		GFF2140	0.87	+0.2
2,173,770	-		GFF2140	0.87	-0.1
2,173,775	-		GFF2140	0.88	-0.9
2,173,775	-		GFF2140	0.88	-0.4
2,173,775	-		GFF2140	0.88	+1.7
2,173,782	+		GFF2140	0.89	-0.6
2,173,782	+		GFF2140	0.89	-1.9
2,173,790	-		GFF2140	0.90	-1.0
2,173,805	+				+0.8
2,173,805	+				-0.4
2,173,813	-				+1.0
2,173,888	+				-0.8
2,173,901	+				+0.1
2,173,911	+				+0.5
2,173,911	+				-1.0
2,173,914	-				+1.4
2,173,919	-				-0.1
2,173,961	-				-0.5
2,174,040	-				-1.6
2,174,055	-				-0.2
2,174,055	-				+1.3
2,174,055	-				+0.1
2,174,067	-				+1.2
2,174,074	-				-1.7
2,174,083	+				-1.5
2,174,096	-				+0.3
2,174,124	-				+0.5
2,174,208	-				-0.1
2,174,238	+				+0.4
2,174,238	+				-0.8
2,174,238	+				-0.1
2,174,246	-				+0.3
2,174,246	-				+0.2
2,174,246	-				-1.2
2,174,246	-				-1.2
2,174,298	+				-1.2
2,174,367	+		GFF2143	0.11	-0.3
2,174,372	+		GFF2143	0.11	+0.3
2,174,380	-		GFF2143	0.12	-0.4
2,174,411	+		GFF2143	0.15	-0.7
2,174,419	-		GFF2143	0.15	+0.2
2,174,419	-		GFF2143	0.15	-0.1
2,174,419	-		GFF2143	0.15	-0.3
2,174,457	+		GFF2143	0.19	-1.1
2,174,457	+		GFF2143	0.19	+0.0
2,174,476	+		GFF2143	0.20	+0.5
2,174,476	+		GFF2143	0.20	-0.7
2,174,484	+		GFF2143	0.21	+0.8
2,174,488	-		GFF2143	0.21	-0.3
2,174,492	-		GFF2143	0.22	-1.8
2,174,498	+		GFF2143	0.22	+0.1
2,174,499	+		GFF2143	0.22	-0.3
2,174,504	+		GFF2143	0.23	-1.5
2,174,506	-		GFF2143	0.23	+1.2
2,174,506	-		GFF2143	0.23	-0.2
2,174,514	+		GFF2143	0.24	+0.6
2,174,514	+		GFF2143	0.24	-1.3
2,174,523	-		GFF2143	0.24	-1.2
2,174,542	+		GFF2143	0.26	+0.0
2,174,550	-		GFF2143	0.27	+0.1
2,174,560	-		GFF2143	0.28	-1.5
2,174,569	-		GFF2143	0.28	-1.5
2,174,571	+		GFF2143	0.28	-1.1
2,174,571	+		GFF2143	0.28	+0.2
2,174,571	+		GFF2143	0.28	-1.0
2,174,571	+		GFF2143	0.28	-1.5
2,174,571	+		GFF2143	0.28	-1.5
2,174,571	+		GFF2143	0.28	-1.7
2,174,571	+		GFF2143	0.28	-0.8
2,174,571	+		GFF2143	0.28	-2.6
2,174,571	+		GFF2143	0.28	-0.0
2,174,571	+		GFF2143	0.28	-0.2
2,174,579	-		GFF2143	0.29	-0.0
2,174,579	-		GFF2143	0.29	+0.0
2,174,579	-		GFF2143	0.29	-1.4
2,174,579	-		GFF2143	0.29	-0.6
2,174,579	-		GFF2143	0.29	-1.8
2,174,579	-		GFF2143	0.29	-1.4
2,174,579	-		GFF2143	0.29	-0.5
2,174,630	+		GFF2143	0.34	+0.0
2,174,630	+		GFF2143	0.34	-0.6
2,174,630	+		GFF2143	0.34	+0.9
2,174,640	+		GFF2143	0.34	-1.3
2,174,655	+		GFF2143	0.36	+0.2
2,174,667	-		GFF2143	0.37	-0.5
2,174,673	-		GFF2143	0.37	-0.6
2,174,721	+		GFF2143	0.41	-0.2
2,174,722	-		GFF2143	0.42	-0.5
2,174,737	+		GFF2143	0.43	-0.8
2,174,743	-		GFF2143	0.43	-2.4
2,174,753	-		GFF2143	0.44	+0.5
2,174,757	-		GFF2143	0.45	-1.9
2,174,826	-		GFF2143	0.51	-0.3
2,174,845	+		GFF2143	0.52	-2.3
2,174,887	+		GFF2143	0.56	-1.5
2,174,889	-		GFF2143	0.56	-0.1
2,174,890	+		GFF2143	0.56	-1.1
2,174,897	-		GFF2143	0.57	+1.3
2,174,910	+		GFF2143	0.58	-1.1
2,174,929	+		GFF2143	0.59	-0.2
2,174,937	-		GFF2143	0.60	-0.5
2,174,956	-		GFF2143	0.62	-1.6
2,174,973	-		GFF2143	0.63	-0.4
2,174,987	-		GFF2143	0.65	-2.3
2,175,051	+		GFF2143	0.70	+0.2
2,175,051	+		GFF2143	0.70	+0.9
2,175,051	+		GFF2143	0.70	-0.1
2,175,051	+		GFF2143	0.70	-0.6
2,175,059	-		GFF2143	0.71	+0.7
2,175,059	-		GFF2143	0.71	-1.9
2,175,059	-		GFF2143	0.71	-0.7
2,175,068	+		GFF2143	0.72	-1.6
2,175,076	-		GFF2143	0.72	-1.6
2,175,087	-		GFF2143	0.73	-0.3
2,175,110	+		GFF2143	0.75	-1.7
2,175,130	-		GFF2143	0.77	-0.3
2,175,137	+		GFF2143	0.77	-1.1
2,175,137	+		GFF2143	0.77	-0.1
2,175,145	-		GFF2143	0.78	-1.3
2,175,145	-		GFF2143	0.78	-0.5
2,175,147	-		GFF2143	0.78	+0.4
2,175,149	+		GFF2143	0.79	+0.2
2,175,174	+		GFF2143	0.81	-0.8
2,175,183	+		GFF2143	0.81	-0.1
2,175,185	+		GFF2143	0.82	-2.0
2,175,185	+		GFF2143	0.82	-1.1
2,175,185	+		GFF2143	0.82	+0.7
2,175,185	+		GFF2143	0.82	-0.5
2,175,185	+		GFF2143	0.82	+0.0
2,175,191	-		GFF2143	0.82	-0.5
2,175,193	-		GFF2143	0.82	-0.2
2,175,193	-		GFF2143	0.82	-1.6
2,175,193	-		GFF2143	0.82	-0.9
2,175,193	-		GFF2143	0.82	-1.2
2,175,193	-		GFF2143	0.82	+0.3
2,175,204	+		GFF2143	0.83	-0.3
2,175,204	+		GFF2143	0.83	-0.6
2,175,212	-		GFF2143	0.84	+2.2
2,175,220	-		GFF2143	0.85	+1.0
2,175,247	-		GFF2143	0.87	-1.5
2,175,256	+		GFF2143	0.88	-2.1
2,175,264	-		GFF2143	0.88	+0.4
2,175,289	-				+0.4
2,175,299	+				-0.4
2,175,299	-				-0.0
2,175,323	+				+1.0
2,175,331	-				-3.9
2,175,331	-				+0.4
2,175,354	-				-0.5
2,175,396	+				-0.3
2,175,404	-				-0.5
2,175,404	-				+0.2
2,175,404	-				+1.1
2,175,404	-				+0.2
2,175,404	-				-0.5
2,175,409	-				-1.6
2,175,429	+				+0.1
2,175,429	+				-0.2
2,175,429	+				-1.9
2,175,429	+				-1.0
2,175,429	+				-0.3
2,175,429	+				-0.5
2,175,434	+				-2.6
2,175,434	+				+0.2
2,175,437	-		GFF2144	0.10	+0.1
2,175,437	-		GFF2144	0.10	-0.6
2,175,437	-		GFF2144	0.10	-1.6
2,175,437	-		GFF2144	0.10	+0.9
2,175,437	-		GFF2144	0.10	+0.1
2,175,453	+		GFF2144	0.23	-0.2
2,175,461	-		GFF2144	0.29	-0.8
2,175,461	-		GFF2144	0.29	+0.9
2,175,487	+		GFF2144	0.50	+0.7
2,175,496	-		GFF2144	0.57	+0.8
2,175,508	+		GFF2144	0.67	+0.0
2,175,522	+		GFF2144	0.78	+0.5
2,175,522	+		GFF2144	0.78	-0.7
2,175,532	-		GFF2144	0.86	-0.8
2,175,535	-		GFF2144	0.88	+0.2
2,175,558	-				-0.6
2,175,566	+				+0.7
2,175,583	+				+0.7
2,175,583	+				+1.0
2,175,597	-				+0.6
2,175,609	-		GFF2145	0.10	+0.4
2,175,619	-		GFF2145	0.12	-0.8
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2,175,669	+		GFF2145	0.23	-0.2
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2,175,913	+		GFF2145	0.75	-1.9
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2,176,011	-				-0.8
2,176,013	+				-1.9
2,176,035	-				+1.6
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2,176,055	-				-0.9
2,176,062	+				-0.2
2,176,062	+				-1.2
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2,176,070	-				-0.4
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